NO15G01000, NO15G01000 (gene) Nannochloropsis oceanica

Overview
NameNO15G01000
Unique NameNO15G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr15:297605..298486 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:297605..298486 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006311TAT_signal
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO15G01000 vs. NCBI_GenBank
Match: EWM22417.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.600e-22
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0 
Query:    5 RLDALGGTLALALLLTLVVLLPTAQAFVPGHPQPSFRSSP-TIRARASAREV--TTLGGEDMSWQEGLNLLETLETPTVEIYNKVLKACAREGQWEPGCWLLEEMVELGLE 113
            R +   G +   L+   ++L+P + AFVP  PQ +    P  +  R+  RE+  TTLGGE+MSWQ+GL LLE+LE+PTVE+YNKVL+ACA  GQWEPGCWLL+EMVELGL+
Sbjct:    6 RRNRFDGFVFYLLVSVALILVPLSHAFVP-RPQQNLPMHPKQLSTRSLGREMITTTLGGENMSWQDGLALLESLESPTVEMYNKVLRACALSGQWEPGCWLLDEMVELGLD 115
The following BLAST results are available for this feature:
BLAST of NO15G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22417.11.600e-2254.95Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001509NSK001509Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G01000.1NO15G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527516gene_4643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G01000.1NO15G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G01000 ID=NO15G01000|Name=NO15G01000|organism=Nannochloropsis oceanica|type=gene|length=882bp
ATGGGGCAAAGCCGCTTGGACGCTTTGGGTGGCACCCTGGCCCTAGCGTT
GCTCCTTACCCTTGTCGTCCTGCTGCCAACTGCGCAGGCATTCGTGCCGG
GGCATCCGCAGCCCTCCTTCCGCTCCTCTCCCACAATTCGTGCAAGAGCT
TCTGCTCGCGAAGTAACAACGCTGGGCGGAGAGGATATGAGCTGGCAAGA
AGGTCTGAACCTGCTCGAAACGCTCGAGACTCCCACGGTCGAGATCTACA
ACAAGGTACTGAAGGCATGCGCGAGGGAGGGACAGTGGGAACCGGGTTGC
TGGCTCTTAGAAGAGATGGTCGAGCTGGGCTTAGAGCCAGATCGGCAGAG
TTTTGTGTTAGCTATTGAGGCGTGTGGGGAGCAAGGCCGGTACGAGGAGG
CCAACCACGTGTTGAGCTACATGAAAGACGCGGAGCACAAGCTAGACAAC
GAGGTATACGGGTTCGTTGCCCGCGCCTGTGAGGCGGCCAAGAATTGGCG
GCAGCTCCAATGGACGCTTGACGAAATGACATACAGGGAATTGGTTCCTG
ATCTGGTGACCTACAATCGCGCGATAGGCGGCTGCGGCGAGGAAGGGGAG
TGGGAGATGGCCTTGACACTGGTGCTGGAGGCTGACCGGCGGGGGGTGAC
TTGCGACTATGCTAGTTACGATCTCGCCATGCAGGCGCTGCACAAGGCCA
AACAAGCGACTCGGGCCCACGAATTGTTGAAAACCATGAAGGAGGCAGGC
GTGGCGCCAGGCAAGGACATGCTGGCATTGGTAATGAAGCTTTGTCAGGA
GGCGGGGGAGATGGTACGGGTCGAAGAAATCGGGCGGGAACTGGATCGGG
GGGGATTGGGGGGCGGCAGGAGGGTTGAGTGA
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protein sequence of NO15G01000.1

>NO15G01000.1-protein ID=NO15G01000.1-protein|Name=NO15G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MGQSRLDALGGTLALALLLTLVVLLPTAQAFVPGHPQPSFRSSPTIRARA
SAREVTTLGGEDMSWQEGLNLLETLETPTVEIYNKVLKACAREGQWEPGC
WLLEEMVELGLEPDRQSFVLAIEACGEQGRYEEANHVLSYMKDAEHKLDN
EVYGFVARACEAAKNWRQLQWTLDEMTYRELVPDLVTYNRAIGGCGEEGE
WEMALTLVLEADRRGVTCDYASYDLAMQALHKAKQATRAHELLKTMKEAG
VAPGKDMLALVMKLCQEAGEMVRVEEIGRELDRGGLGGGRRVE*
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Synonyms
Publications