NO15G00920, NO15G00920 (gene) Nannochloropsis oceanica

Overview
NameNO15G00920
Unique NameNO15G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2006
Alignment locationchr15:281185..283190 +

Link to JBrowse

Properties
Property NameValue
DescriptionHeat shock chaperonin-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:281185..283190 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006636STI1_HS-bd
Homology
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BLAST of NO15G00920 vs. NCBI_GenBank
Match: EWM22413.1 (Heat shock chaperonin-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 1.800e-20
Identity = 230/357 (64.43%), Postives = 242/357 (67.79%), Query Frame = 0 
Query:    1 MKIKEIKAELEERGVEWRDLLEKNEFSLRLAEARVRG-----------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEAARYTKALAEVMKLKITEIKKELDLLKIPHSSFFEKREFAEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFSDIFNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPGMGGIDPSMIASIMSNPRTQAAFQRAQXXXXXXXXXXXXXXXXXXXXKYANDKEVTSVLNELQSLFRK 347
            MKIKEIKAELEERGV+W+DLLEK EF  RLA ARV+G            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      DEA R+++ LAEVMKLKI+EIKKELDLLKIPHSSFFEKREFAEAL                                                                  XXXXXXXXXXXX        XXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        PSM+ASIMSNPR QAAFQRAQ XXXXXXXXXXXXXXX    KYANDKE++S+LNELQSLF+K
Sbjct:   98 MKIKEIKAELEERGVDWKDLLEKEEFMHRLASARVQGITKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAAKVDEATRHSEVLAEVMKLKISEIKKELDLLKIPHSSFFEKREFAEAL---------------------------ARARLNPPSTTSRGENVDPDEDPSQYRFVEVKRMPREGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSMLASIMSNPRAQAAFQRAQRXXXXXXXXXXXXXXXGNISKYANDKEISSILNELQSLFKK 427
The following BLAST results are available for this feature:
BLAST of NO15G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22413.11.800e-2064.43Heat shock chaperonin-binding protein [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001514NSK001514Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00920.1NO15G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G00920.2NO15G00920.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g14gene7944Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00920.1NO15G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G00920.2NO15G00920.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00920 ID=NO15G00920|Name=NO15G00920|organism=Nannochloropsis oceanica|type=gene|length=2006bp
AAACAAAGCCTCACATACAAAACAGCCACCATGCGACGACGGAATTTAGG
GTTGGTCGGTCTTTTCTGGAGCGGCGCATTATCCTCTGCCTTTGTCTTCC
CGGTGAAACCATTGGGGGCCAGCCGCCATGTGATGGAACAGCAGAAGCAT
ATCACGgtgagtctcatcataacgcggcaaccctagaagtcgcacgctcg
attattagggcgacttgtgtgcagcatggaaaaagacgcacgttcaagta
agggcagacaggggttccgcacaatttgaagattgtcattattttgggcc
ccttgcgtcctcgccacgtcttcgccagcacagacaagacacgcacaaag
cggccttgtcgtgctcccttcgcaaccccgtgatactccacccacgcacc
attcatcttgactcttgcctttcccggcctctctccgcccacctttttgt
tacagtaacccattcaaatacagcaacggtgctgttccaaatatgtgtcc
atccactcacaccccatccctttgtatctccaccttttctcctcccatcg
actcagCCGTGTAGCCTTTCCACATTCCAGCCCAGTATCAGCGGCAGTAT
CTGTGACAGCGGAAGAAGAAGAATTTTCTTTCCTTTCTCAAGGACAGCAA
CCGCAACAGAAGCCACCGCCGCTGGGGAGGCCGACACCGAGGCGGACGCG
ACAAAAATAGCCGCTGAAGTGGCAGCCATCAAGCCGATGAAGATTAAGGA
GATCAAGGCCGAGCTGGAAGAGAGAGGGGTAGAGTGGAGAGATTTGCTGG
AAAAAAATGAATTTTCGTTGAGGTTGGCCGAGGCACGCGTCAGAGGCACC
ACGAAGTCCCCGCCACCTGTGGAGGATGAGAAGAAGAAGGAGGAGAACGA
GAGCGTGGACACAGCGGAACAACCCCGAGCGGAATCGTCGTCGTCATCGG
CATCATCGCCGCCTCCGCCTCCCAAGGAGCAGCCGGCAGCAGGAGGAGCA
GCAGCATCGGCGACGACTAAAATGGATGAGGCGGCGCGGTACACCAAGGC
CCTGGCTGAAGTGATGAAGCTCAAGgttcgtacgcgggagaaacgccaaa
agaacgcgcacgattaggacaaaagggggaactgataaaaggaagtattt
ctggaatagattagtccatttactaggacagaagaaagagaataattgat
ctaatgtacgtaacatcctatcaacacccattcctccctccctccctccc
accctccctccctccctccctccctcctccctcattctccttttttccca
ccagATCACCGAAATAAAGAAAGAGCTCGACCTACTTAAGATTCCGCACT
CGAGCTTTTTCGAAAAACGCGAGTTTGCCGAAGCCCTCGCTCGGGCCCGC
GTCAACCCCCCTTCCAGCAGCAGCAGCAGTAGTACCAGTCGGGGGGATAA
CGTCGACCCGGACGAAGATCCAAGTCAGTATCGGTTTGTAGAAGTCAAAC
GGATGCCCAAGGAGGGCGGAGAAGGAGGAGGCGGCGGGGGACCACGGGCT
GGGGCAGGAGCGGGAGGGAGGGCCGGAGAGAGACCAGGGCCGGGTTCAGG
AAGGGGAGGAGGGGGAGGTGATCCGTTCTCAGATATTTTCAACGCACGGG
GTGGAGGCGGAGGAGCTTCAGCTGGAACCAGGGCTGGGGGCGCATCGGGC
GTGGGGGGGTTTGCCGACGCTTTCTTTAAGCAGACCGGTGGTGCGAGGGG
AGGAGGGGGAGGGAGCCCGTTTGGTGGGGGAGGGTTTGGGGGCATGCCAG
GCATGGGAGGGATTGACCCGAGCATGATAGCATCGATCATGTCAAACCCT
CGGACACAAGCCGCATTTCAACGGGCACAGCAAAATCCCAAGGTGATGGC
AGCGTTGCAAGACGTCATGTCTAATCCGGCCAACATTGCCAAGTATGCGA
ATGATAAGGAGGTGACAAGCGTGTTGAATGAACTGCAAAGTTTATTTAGA
AAGTAG
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protein sequence of NO15G00920.1

>NO15G00920.1-protein ID=NO15G00920.1-protein|Name=NO15G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MRRRNLGLVGLFWSGALSSAFVFPVKPLGASRHVMEQQKHITPCSLSTFQ
PSISGSICDSGRRRIFFPFSRTATATEATAAGEADTEADATKIAAEVAAI
KPMKIKEIKAELEERGVEWRDLLEKNEFSLRLAEARVRGTTKSPPPVEDE
KKKEENESVDTAEQPRAESSSSSASSPPPPPKEQPAAGGAAASATTKMDE
AARYTKALAEVMKLKITEIKKELDLLKIPHSSFFEKREFAEALARARVNP
PSSSSSSSTSRGDNVDPDEDPSQYRFVEVKRMPKEGGEGGGGGGPRAGAG
AGGRAGERPGPGSGRGGGGGDPFSDIFNARGGGGGASAGTRAGGASGVGG
FADAFFKQTGGARGGGGGSPFGGGGFGGMPGMGGIDPSMIASIMSNPRTQ
AAFQRAQQNPKVMAALQDVMSNPANIAKYANDKEVTSVLNELQSLFRK*
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protein sequence of NO15G00920.2

>NO15G00920.2-protein ID=NO15G00920.2-protein|Name=NO15G00920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MKIKEIKAELEERGVEWRDLLEKNEFSLRLAEARVRGTTKSPPPVEDEKK
KEENESVDTAEQPRAESSSSSASSPPPPPKEQPAAGGAAASATTKMDEAA
RYTKALAEVMKLKITEIKKELDLLKIPHSSFFEKREFAEALARARVNPPS
SSSSSSTSRGDNVDPDEDPSQYRFVEVKRMPKEGGEGGGGGGPRAGAGAG
GRAGERPGPGSGRGGGGGDPFSDIFNARGGGGGASAGTRAGGASGVGGFA
DAFFKQTGGARGGGGGSPFGGGGFGGMPGMGGIDPSMIASIMSNPRTQAA
FQRAQQNPKVMAALQDVMSNPANIAKYANDKEVTSVLNELQSLFRK*
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Synonyms
Publications