NO15G00900, NO15G00900 (gene) Nannochloropsis oceanica

Overview
NameNO15G00900
Unique NameNO15G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1104
Alignment locationchr15:273147..274250 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:273147..274250 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO15G00900 vs. NCBI_GenBank
Match: XP_005852781.1 (hypothetical protein NGA_0682200 [Nannochloropsis gaditana CCMP526] >EKU23050.1 hypothetical protein NGA_0682200 [Nannochloropsis gaditana CCMP526] >EWM22491.1 hypothetical protein Naga_100011g11 [Nannochloropsis gaditana])

HSP 1 Score: 381.3 bits (978), Expect = 3.300e-102
Identity = 178/221 (80.54%), Postives = 197/221 (89.14%), Query Frame = 0 
Query:   74 SSPLQRSQTKYIPKGWDREMYRPPDEVLFEWQELLCCLKFMEEKDVNAGMLAPETRDMMIGYADTLIKNGSPVRTLEGLAEAMKGRWKLAFTTEERYKILPPGTRVYYDIHRDDRLENVMKFKDKYWESLVSSAKYNLTPQGRLVFEFTSNYVNINSPFSKAGKQWKLPLPQNVGNLGTAFADVSYMDGVIWIEKIRDPATQSVFVTIYEYVGPLAGEERS 295
            SS  +++ T Y P GWDREMYRPPD+VLFEWQEL+CCLKFMEEK+VNAGMLAPETRDMMI YAD LI  GSPVRTLEGLAEAM GRWKLAFTTEERYKILPPGTRVYY IHRD RLENVMKFKDKYW+SL+SSA YNLTPQGRL+FEF+SN V+IN+PF +A  QWK+PLP NVGN G+AFADVSYMDGV+WIEKIRDP T+ VFVTIYEY GP+ GEER+
Sbjct:   72 SSMRRQAHTVYSPPGWDREMYRPPDDVLFEWQELVCCLKFMEEKEVNAGMLAPETRDMMIEYADALIAGGSPVRTLEGLAEAMMGRWKLAFTTEERYKILPPGTRVYYHIHRDGRLENVMKFKDKYWDSLISSATYNLTPQGRLLFEFSSNRVHINNPF-QARAQWKIPLPPNVGNTGSAFADVSYMDGVLWIEKIRDPGTEQVFVTIYEYQGPIEGEERT 291
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BLAST of NO15G00900 vs. NCBI_GenBank
Match: CBJ31359.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1 bits (209), Expect = 4.900e-13
Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = 0 
Query:  154 EAMKGRWKLAFTTEERYKILPPGTRVY---YDIHRDDRLENVMKFKDKYW--ESLVSSAKYNLTPQGRLVFEFTSNYVNINSPFSKAGKQWKLPLPQNVGNLGTAFADVSYMDGVIWIEKIRDPAT-----QSVFVTIYEYVGPLAGEER 294
            + MKG+WKL F+TEERYK LPP + VY   YD     RL+NV++F  K W  +S+ +   YN+  +G++ FEF     ++          +K+PLP    N    F +V Y DG +WIE      T     ++  V IY  +G    E++
Sbjct:   66 DIMKGKWKLDFSTEERYKFLPPTSDVYNYIYDGAGGGRLDNVLRFY-KSWAVKSVRAVTNYNMDDRGKISFEFDRIEADLFG--------FKVPLPN--FNADAGFVEVQYFDGDLWIEAFEADTTMTESGKTTVVNIYRRIGDATEEDK 204
The following BLAST results are available for this feature:
BLAST of NO15G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
10020030040050060070080090010001100Expect = 3.30e-102 / Id = 80.54SequenceXP_005852781.1CBJ31359.1
Match NameE-valueIdentityDescription
XP_005852781.13.300e-10280.54hypothetical protein NGA_0682200 [Nannochloropsis ... [more]
CBJ31359.14.900e-1335.33expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001519NSK001519Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00900.1NO15G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00900.1NO15G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00900 ID=NO15G00900|Name=NO15G00900|organism=Nannochloropsis oceanica|type=gene|length=1104bp
ATGGCACCACCACCAAGAAGAATAAGAGGTACTGCTATGCTACTAGCAGG
GACGGCTGCTGGTGTTGTCACGGCTGCCCTGGGCCTATGCGCTCCGATTG
CAAGCGCCTTCATCCCGCATGCCCTCGTCATCAGCAGACCATCCTCCTCT
TCCTCATTATCCTCCTCAACCCGCAGCAGCCTATTCAGATACGCCACCTC
CACGCCCACCCCTCCCCCCTCCAGCCCACTACAACGTTCTCAGACCAAGT
ACATACCCAAAGGATGGGACCGTGAGATGTATCGACCGCCCGACGAAGTC
CTCTTTGAATGGCAAGAGCTTTTGTGCTGCCTCAAATTCATGGAAGAAAA
AGATGTCAACGCCGGGATGCTCGCCCCCGAGACCCGGGATATGATGATTG
GGTACGCCGATACCTTGATCAAGAACGGCTCCCCTGTTCGTACTTTGGAA
GGCTTGGCTGAGGCGATGAAGGGAAGATGGAAGTTGGCATTCACCACGGA
AGAGAGGTATAAAATCCTCCCCCCCGGCACTCGTGTGTATTATGATATCC
ACCGCGACGACCGCCTCGAGAATGTCATGAAGTTTAAAGACAAGTACTGG
GAGTCTCTCGTATCCTCCGCAAAATACAACCTGACGCCACAAGGCCGCCT
GGTTTTCGAATTCACTTCCAACTACGTCAACATCAACAGCCCCTTCTCCA
AGGCAGGCAAACAATGGAAGCTCCCCCTCCCTCAAAATGTGGGAAATCTA
GGCACTGCCTTCGCAGATGTCAGCTACATGGACGGCGTCATATGGATCGA
GAAGATAAGGGACCCTGCGACCCAGTCCGTGTTCGTAACAATCTATGAGT
ATGTTGGGCCGCTGGCAGGGGAGGAACGATCGTCGCTCCTGTCCTTGACC
TCGTCGGCTTCCTCTAAGGCAGCTGAAGTGACGGGCTTGGCTTCGAGCAC
ACAGTCCTTGGTTTCCTTTTTGGAGGGGCTAGAGAGGGAGGAGCAGGAGG
AGTTGGTGGAGAAGAATAGGAAGGAGGAGGAGGGGGAGGGAAAGGAGGAG
AGGGCGGGGGCCGCTGAGACGGAGTCGTCGCCATCGTCAAAAGTCTCGGC
ATGA
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protein sequence of NO15G00900.1

>NO15G00900.1-protein ID=NO15G00900.1-protein|Name=NO15G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MAPPPRRIRGTAMLLAGTAAGVVTAALGLCAPIASAFIPHALVISRPSSS
SSLSSSTRSSLFRYATSTPTPPPSSPLQRSQTKYIPKGWDREMYRPPDEV
LFEWQELLCCLKFMEEKDVNAGMLAPETRDMMIGYADTLIKNGSPVRTLE
GLAEAMKGRWKLAFTTEERYKILPPGTRVYYDIHRDDRLENVMKFKDKYW
ESLVSSAKYNLTPQGRLVFEFTSNYVNINSPFSKAGKQWKLPLPQNVGNL
GTAFADVSYMDGVIWIEKIRDPATQSVFVTIYEYVGPLAGEERSSLLSLT
SSASSKAAEVTGLASSTQSLVSFLEGLEREEQEELVEKNRKEEEGEGKEE
RAGAAETESSPSSKVSA*
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Synonyms
Publications