NO15G00830, NO15G00830 (gene) Nannochloropsis oceanica

Overview
NameNO15G00830
Unique NameNO15G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1349
Alignment locationchr15:259333..260681 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:259333..260681 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021562DUF3007
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO15G00830 vs. NCBI_GenBank
Match: XP_005854057.1 (hypothetical protein NGA_0486600 [Nannochloropsis gaditana CCMP526] >EKU22304.1 hypothetical protein NGA_0486600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.0 bits (393), Expect = 1.200e-34
Identity = 99/163 (60.74%), Postives = 112/163 (68.71%), Query Frame = 0
Query:    3 SQTRSVLPLLSIALLLAAAIAWTVPSPLQRPQSSLAPPTTSRTAIPSRL-PSSFP----------LTRRLAXXXXXXXXXXXXKLPMLLDVETRGGILFVSTLGTAAVFGGYSVATALGVDGQKAGIYISVAMTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            S  R +L LL +ALLLA   AWT+P PL   + SL+  +    + P  + P  FP          LTRR+A            KLPMLLDVETRGGILFVSTL TAA+F GY+VATALGVDG +AGIYISVAMTLGMVAWT +YIFRVANKDMTYAKQLKNYE
Sbjct:    5 SAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMA---TEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYE 164          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: EWM22472.1 (Protein of unknown function DUF3007 [Nannochloropsis gaditana])

HSP 1 Score: 156.0 bits (393), Expect = 1.200e-34
Identity = 99/163 (60.74%), Postives = 112/163 (68.71%), Query Frame = 0
Query:    3 SQTRSVLPLLSIALLLAAAIAWTVPSPLQRPQSSLAPPTTSRTAIPSRL-PSSFP----------LTRRLAXXXXXXXXXXXXKLPMLLDVETRGGILFVSTLGTAAVFGGYSVATALGVDGQKAGIYISVAMTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            S  R +L LL +ALLLA   AWT+P PL   + SL+  +    + P  + P  FP          LTRR+A            KLPMLLDVETRGGILFVSTL TAA+F GY+VATALGVDG +AGIYISVAMTLGMVAWT +YIFRVANKDMTYAKQLKNYE
Sbjct:   22 SAGRPMLLLLPLALLLAGVRAWTMPKPLLLTRPSLSRSSLLGLSRPGHISPPRFPSIASSSSTSHLTRRMA---TEDGPEKANKLPMLLDVETRGGILFVSTLVTAAIFAGYNVATALGVDGLQAGIYISVAMTLGMVAWTFTYIFRVANKDMTYAKQLKNYE 181          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: CBJ31047.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 86.7 bits (213), Expect = 8.600e-14
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 0
Query:   76 LPMLLDVETRGGILFVSTLGTAAVFGGYSVATALGVDGQKAGIYISVAMTL-GMVAWTASYIFRVANKDMTYAKQLKNYE 155
            LP  LD  TRGG + V TL      G Y   TA+GVDG KAG ++ V  TL G++AW  SY FRVA K+MTYA QLKNYE
Sbjct:   74 LPFFLDPSTRGGAVVVPTLSLLLPLGAYGALTAVGVDGSKAGAWVGVGYTLIGLIAWVGSYFFRVATKNMTYAVQLKNYE 153          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: XP_005763457.1 (hypothetical protein EMIHUDRAFT_419792 [Emiliania huxleyi CCMP1516] >XP_005777833.1 hypothetical protein EMIHUDRAFT_420144 [Emiliania huxleyi CCMP1516] >EOD11028.1 hypothetical protein EMIHUDRAFT_419792 [Emiliania huxleyi CCMP1516] >EOD25404.1 hypothetical protein EMIHUDRAFT_420144 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.5 bits (184), Expect = 2.000e-10
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   76 LPMLLDVETRGGILFVSTLGTAAVFGGYS-VATALGVDGQKAGIYISVA-MTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            LP  LD+ T+GGI+F S +G  A F  Y+ +   +G+D   AG  I V  + LG VAWT++Y+FRVANKDMTYAKQL++YE
Sbjct:   63 LPFFLDIGTKGGIVFYSVIGIVAPFLLYNFLQDQMGMDVVGAGNVILVGYVGLGTVAWTSTYVFRVANKDMTYAKQLRDYE 143          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: XP_005767818.1 (hypothetical protein EMIHUDRAFT_427662 [Emiliania huxleyi CCMP1516] >EOD15389.1 hypothetical protein EMIHUDRAFT_427662 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.5 bits (184), Expect = 2.000e-10
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   76 LPMLLDVETRGGILFVSTLGTAAVFGGYS-VATALGVDGQKAGIYISVA-MTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            LP  LD+ T+GGI+F S +G  A F  Y+ +   +G+D   AG  I V  + LG VAWT++Y+FRVANKDMTYAKQL++YE
Sbjct:   63 LPFFLDIGTKGGIVFYSVIGIVAPFLLYNFLQDQMGMDVVGAGNVILVGYVGLGTVAWTSTYVFRVANKDMTYAKQLRDYE 143          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: GAX09273.1 (hypothetical protein FisN_17Lu018 [Fistulifera solaris])

HSP 1 Score: 70.5 bits (171), Expect = 6.400e-9
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 0
Query:   75 KLPMLLDVETRGGILFVSTLGTAAVFGGYSVAT-ALGVDGQKAGIYISVAMTL-GMVAWTASYIFRVANKDMTYAKQLKNYE 155
            KLP  LD  T+GG++F+S +        Y+VAT   G D  + GI I V  T+   VAW ++YIFRVA KDMTYAKQLK+YE
Sbjct:   68 KLPFWLDPGTKGGVVFLSFVLFLVPLLAYNVATNVFGADEIETGITIGVGFTVFATVAWVSTYIFRVATKDMTYAKQLKDYE 149          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: KOO53760.1 (hypothetical protein Ctob_009609 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 69.3 bits (168), Expect = 1.400e-8
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   12 LSIALLLAAAIAWTVPSPLQRPQSSLAPPTTSRTAIP--SRLPSSFPLTRRLAXXXXXXXXXXXXKLPMLLDVETRGGILFVSTLGTAAVFGGYS-VATALGVDGQKAGIYISVA-MTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            ++  LL   A+   V    + P S+LA P + R AI   S LP++   +R  A             LP  L+  T+GGI+F S +G    F  YS +   LG D   AG  I +  + +G V WT SY+FRVANKDMTYA+QL++YE
Sbjct:    1 MAARLLPLLALGLGVVHGFRTPPSALAAP-SRRAAISGLSPLPAAAVTSRACAPTLAAPAESDKKSLPFFLNPNTKGGIIFWSIVGIVLPFVAYSFMLDNLGWDVVLAGNVILIGYVGVGTVVWTGSYVFRVANKDMTYAQQLRDYE 146          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: EJK50173.1 (hypothetical protein THAOC_30885, partial [Thalassiosira oceanica])

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0
Query:   76 LPMLLDVETRGGILFVSTLGTAAVFGGYSVATA-LGVDGQKAGIYISVAMT-LGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            LPMLLD  T+GG +F+S +        Y+VAT  +G+D  + G  I V  + + M+ W  SY+FRVA KDMTYAKQLK+YE
Sbjct:  158 LPMLLDPGTKGGAVFLSVVLFVVPLIVYNVATGPMGMDEIEVGRNIGVGFSVVSMIFWLGSYVFRVATKDMTYAKQLKDYE 238          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: OEU16366.1 (hypothetical protein FRACYDRAFT_185821 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-8
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0
Query:   76 LPMLLDVETRGGILFVSTLGTAAVFGGYSVATAL-GVDGQKAGIYISVAMT-LGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            LP  LD  TRGG + +  +     F GY++AT++ G++G  AG +I V  T    + W  +YIFRVA KDMTYAKQLK+YE
Sbjct:   15 LPFWLDPGTRGGAVVLGIILFIVPFIGYAIATSVFGIEGVDAGKWIGVGFTAAATLVWVFTYIFRVATKDMTYAKQLKDYE 95          
BLAST of NO15G00830 vs. NCBI_GenBank
Match: WP_007308309.1 (DUF3007 domain-containing protein [Crocosphaera watsonii] >EAM47865.1 hypothetical protein CwatDRAFT_0506 [Crocosphaera watsonii WH 8501] >EHJ09754.1 hypothetical protein CWATWH0003_5479 [Crocosphaera watsonii WH 0003] >CCQ64436.1 hypothetical protein CWATWH0401_128 [Crocosphaera watsonii WH 0401] >CCQ49772.1 hypothetical protein CWATWH8502_3621 [Crocosphaera watsonii WH 8502] >CCQ54138.1 hypothetical protein CWATWH0005_1195 [Crocosphaera watsonii WH 0005] >CCQ70271.1 hypothetical protein CWATWH0402_2591 [Crocosphaera watsonii WH 0402])

HSP 1 Score: 63.9 bits (154), Expect = 6.000e-7
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0
Query:   91 VSTLGTAAVFGG---YSVATALGVDGQKAGIYISVAMTLGMVAWTASYIFRVANKDMTYAKQLKNYE 155
            V T+  A   GG   Y V  A+G+DG  AG++    + + ++AWT+SY+FRVANKDMTY +QLK+YE
Sbjct:    6 VITVSLAIFVGGGLLYIVFQAIGLDGLSAGVWSQALLVIVVLAWTSSYLFRVANKDMTYNQQLKDYE 72          
The following BLAST results are available for this feature:
BLAST of NO15G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
XP_005854057.11.200e-3460.74hypothetical protein NGA_0486600 [Nannochloropsis ... [more]
EWM22472.11.200e-3460.74Protein of unknown function DUF3007 [Nannochlorops... [more]
CBJ31047.18.600e-1456.25conserved unknown protein [Ectocarpus siliculosus][more]
XP_005763457.12.000e-1053.09hypothetical protein EMIHUDRAFT_419792 [Emiliania ... [more]
XP_005767818.12.000e-1053.09hypothetical protein EMIHUDRAFT_427662 [Emiliania ... [more]
GAX09273.16.400e-951.22hypothetical protein FisN_17Lu018 [Fistulifera sol... [more]
KOO53760.11.400e-838.78hypothetical protein Ctob_009609 [Chrysochromulina... [more]
EJK50173.14.100e-849.38hypothetical protein THAOC_30885, partial [Thalass... [more]
OEU16366.14.100e-848.15hypothetical protein FRACYDRAFT_185821 [Fragilario... [more]
WP_007308309.16.000e-749.25DUF3007 domain-containing protein [Crocosphaera wa... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001525NSK001525Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00830.1NO15G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587255gene_4627Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g5gene7935Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00830.1NO15G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00830 ID=NO15G00830|Name=NO15G00830|organism=Nannochloropsis oceanica|type=gene|length=1349bp
TAAAAAGATGCTTTTATGGTGATAAAGGCCTTGTAGGAGGTTTTCTCTGA
AAAGGCCGTTGAGAAGAAGCAACTGAACTGTGTCAGACCTTTACACGTCC
ACGATCATGCCATGCACATCTTCGCGGGGCTGACAAAGGGCATGTTTGTC
TATTGGACGAGAACATCTGATTGTCTCGGCATCAATGTGCATTTCCCTTA
GGTCACGCTGCCTTCCCATCCTCATCTCCGCTCCCTTCTCTCTTTCCCAC
AGCTTCCGTTATCATAATGGCGAGCCAAACAAGAAGCGTGCTGCCCCTGC
TGTCCATTGCCTTGCTCCTCGCTGCGGCGATTGCCTGGACTGTGCCATCG
CCGCTGCAGCGGCCCCAGgtaaggacggggaagggaagactgagacattg
tcaggaaaagtaggacgacgacgtcacggcaagggcaagtatcttggatt
tcctatgcgctgcgtaccatgctagccttcctctaccattcacatcatgg
agggacttcgtgctctgtgtctttctctatagccaatttatccggagcaa
tggctcattcgaacgtctctagggtagcctcatgccacacgcagacgcct
ccctccatggtctgtcgtctccttcgttgtttatcaggcatcacaaagac
attttcatctctcggcatacgcatttccacgctgcttacaatatgtttaa
acctcatcccttcctctcctctttttcgaaccccccccgcatagTCCTCC
TTGGCCCCTCCCACCACCTCTCGCACGGCCATTCCCTCAAGACTGCCGTC
GTCCTTCCCCCTCACCCGTCGCCTGGCCGCGGACGACAGTAACAACAATG
AAAGCAGTAGTAACAAGCTGCCCATGCTTTTGGACGTGGAAACGAGGGGA
GGCATTTTGTTTGTCTCGACCCTTGGCACGGCCGCAGTGTTTGGTGGGTA
CAGCGTGGCGACGGCTTTGGGGGTGGATGGGCAGAAGGCCGGGATCTACA
TTTCGGTGGCGATGACTCTGGGAATGGTTGCTTGGACGGCAAGCTATATT
TTTCGGGTGGCAAATAAGGATATGACGTATGCCAAGCAGTTGAAGAATTA
TGAGGACGCCGTGTTGGCCAAGAGGTTGGAGGAGCTGGAGGAGGAGGAGG
TGGAGGCCTTGCTGGAGGAGGTGGAGAAGGAGGGGGCAAACATGAAAATG
TAAATACAGTGATAATTCAAATTTTCTTCATTTAATTGATGACGGGGCTA
AGGGGGATGAAGGTGGAGGTTTGTGTGTGCATGGAAGGAGGGAGAAGGGA
GGACGGGGGAATGAACGAAGTCAAATTTAACGAATGCTACCCGCCGAGA
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protein sequence of NO15G00830.1

>NO15G00830.1-protein ID=NO15G00830.1-protein|Name=NO15G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MASQTRSVLPLLSIALLLAAAIAWTVPSPLQRPQSSLAPPTTSRTAIPSR
LPSSFPLTRRLAADDSNNNESSSNKLPMLLDVETRGGILFVSTLGTAAVF
GGYSVATALGVDGQKAGIYISVAMTLGMVAWTASYIFRVANKDMTYAKQL
KNYEDAVLAKRLEELEEEEVEALLEEVEKEGANMKM*
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Synonyms
Publications