NO15G00800, NO15G00800 (gene) Nannochloropsis oceanica

Overview
NameNO15G00800
Unique NameNO15G00800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr15:249362..250531 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:249362..250531 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010865DUF1499
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO15G00800 vs. NCBI_GenBank
Match: EWM22476.1 (Protein of unknown function DUF1499 [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.500e-99
Identity = 186/288 (64.58%), Postives = 221/288 (76.74%), Query Frame = 0 
Query:   71 SVDIPSSYMGDESTISSWPASPRVGINQRTCCNQASLRCYLSTSLFLSILLFLWSCVIGFVWGAFLSLGSIGAHLTYFHILLRRAQPPVGVRNIQKQRCLHYTVLTLSYLVLFYLLIRLICARTTFVRHAAFPSRCYRNALGTIPPACVRVTNDPLSTGERAHGLSAPTFFTPKTHSVTQLVEKWAGKQFQTRVMGRAGAGGKGGETLHIVAVTGFWGFVDDMAVEVACVD----VEPGNSTVVVRVQSEQRFGTLDGGVNKRRVLSLFKFLEKKAGALPVGRCPPTP 355
            SVDIPSSYMGD+ST+SSWP SPR  ++QRTCCN  S R Y  T+L ++ +LF+W+ V+GFVWG  LSLG+I AHL YF +LLR  QPPVGV N +KQRCLHYTVL LSY+++ Y+LIRL  AR T++R   FPS CY NALGT+P ACVRVT  P+   + +HGLSAPT FTP+  SV +LV+ W  KQFQT+V+GR    GK  E++H+VAVTGFWGFVDD+AVEVACV      E GN TVVVRVQSEQRFGTLDGG NK RV SL  FLE++AG LPVG C PTP
Sbjct:  100 SVDIPSSYMGDDSTVSSWPTSPRNSLDQRTCCNLISYRYYFITTLLVASVLFVWASVLGFVWGVLLSLGAIIAHLAYFRLLLRGVQPPVGVANTRKQRCLHYTVLLLSYVIMIYMLIRLATARNTYIRDHVFPSNCYPNALGTVPHACVRVTERPMEGEDWSHGLSAPTIFTPEVDSVVRLVDAWTRKQFQTKVVGRRREAGK--ESVHLVAVTGFWGFVDDVAVEVACVGRGGAGEGGNGTVVVRVQSEQRFGTLDGGKNKDRVKSLLSFLERQAGGLPVGACSPTP 385
The following BLAST results are available for this feature:
BLAST of NO15G00800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
10020030040050060070080090010001100Expect = 1.50e-99 / Id = 64.58SequenceEWM22476.1
Match NameE-valueIdentityDescription
EWM22476.11.500e-9964.58Protein of unknown function DUF1499 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001529NSK001529Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00800.1NO15G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100011g2gene7932Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00800.1NO15G00800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00800 ID=NO15G00800|Name=NO15G00800|organism=Nannochloropsis oceanica|type=gene|length=1170bp
ATGTCCTCCTCGCCCACTCGAAGGGCAGGCAGCGGCGGCCGTGGCAGCTC
GGGTGGAGGAAGTCCGACCCCGTTGGGTGGCACTGGTGGTGGCGGGGTAG
GGGGAAATGATTGGGAATGGGCAGTACGGCCAACCAAgtacaccgaattg
acgcacggaggttgtagtatcagcagccttcacggcacagaatgaggcat
ttttgatacaggctcgcctctccgcagcaacatcagGACACAAGGCCTGA
GCCTTAATTTGTTCTTGACAAACACCTCGTCCGCTTCTGGTTTAGGGGTG
GAGGAAGAGAGCGTCGACATCCCTTCGTCGTACATGGGCGACGAATCTAC
TATATCATCCTGGCCGGCCTCGCCGCGAGTGGGCATTAATCAAAGAACAT
GCTGCAACCAGGCCTCTTTGCGGTGTTACCTCAGTACCAGCCTCTTCCTC
TCCATCCTCCTTTTCTTATGGTCTTGCGTCATTGGCTTCGTGTGGGGAGC
TTTCCTGTCATTGGGTTCCATCGGGGCCCACCTTACGTATTTCCATATTC
TTCTCCGTCGTGCTCAACCCCCCGTCGGGGTCCGCAACATCCAAAAACAA
CGCTGCCTGCACTATACCGTCCTTACCCTTTCCTACCTCGTCCTATTTTA
CCTTCTAATCCGCTTGATCTGTGCGCGTACTACTTTTGTGCGACATGCCG
CCTTCCCTTCCCGCTGCTATCGAAATGCTCTGGGCACGATTCCTCCCGCA
TGCGTCCGTGTCACAAACGACCCTCTCTCGACAGGGGAGCGAGCGCACGG
CTTGAGCGCACCGACATTTTTCACGCCCAAGACACACAGCGTGACGCAGC
TTGTGGAAAAATGGGCAGGGAAACAGTTTCAAACCAGGGTGATGGGAAGG
GCGGGTGCGGGTGGGAAGGGGGGGGAAACCTTGCACATAGTGGCGGTGAC
GGGCTTTTGGGGATTTGTGGATGACATGGCAGTCGAGGTCGCGTGTGTGG
ATGTGGAGCCCGGGAACAGCACGGTGGTTGTTAGGGTGCAGAGCGAGCAG
AGATTTGGCACCTTGGACGGAGGAGTGAATAAGAGGAGGGTCCTTTCCTT
GTTTAAATTTTTGGAAAAGAAGGCCGGGGCCTTGCCCGTGGGAAGGTGTC
CTCCGACGCCGACGCTGTGA
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protein sequence of NO15G00800.1

>NO15G00800.1-protein ID=NO15G00800.1-protein|Name=NO15G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSSSPTRRAGSGGRGSSGGGSPTPLGGTGGGGVGGNDWEWAVRPTKTQGL
SLNLFLTNTSSASGLGVEEESVDIPSSYMGDESTISSWPASPRVGINQRT
CCNQASLRCYLSTSLFLSILLFLWSCVIGFVWGAFLSLGSIGAHLTYFHI
LLRRAQPPVGVRNIQKQRCLHYTVLTLSYLVLFYLLIRLICARTTFVRHA
AFPSRCYRNALGTIPPACVRVTNDPLSTGERAHGLSAPTFFTPKTHSVTQ
LVEKWAGKQFQTRVMGRAGAGGKGGETLHIVAVTGFWGFVDDMAVEVACV
DVEPGNSTVVVRVQSEQRFGTLDGGVNKRRVLSLFKFLEKKAGALPVGRC
PPTPTL*
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Synonyms
Publications