NO15G00730, NO15G00730 (gene) Nannochloropsis oceanica

Overview
NameNO15G00730
Unique NameNO15G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2392
Alignment locationchr15:234227..236618 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:234227..236618 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00730 vs. NCBI_GenBank
Match: EWM22514.1 (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 478.8 bits (1231), Expect = 2.700e-131
Identity = 259/412 (62.86%), Postives = 314/412 (76.21%), Query Frame = 0 
Query:  224 TPAIKNLVALLSDELPSLSPSLLLPLLPPSFLHDPDIEQVRIRLRFLKQALPGVNLSQVLPEAPRLLSYHGPNAPEMERLISERYHRLISVTQNKQDAIALIEAAPRALLLRDFDSRVLPYLELFTSALPGLKPSYLLAKHPVLLNKGINSTILPRLAALPFLLPSSLSPLSPKDLASLVRPYPALFTLPLPSLSTRLASLSLLLPPSLLLPTLCQHPRAWTADLSEVIAPQLHLLLASLGPTTTSSILHHLPXXXXXXXXXLTQKLDLLSSLLGGSVGGVNLLLSKNPMILAMDVTANVAPKLRFVRSLFPDLEEDDFVALLGTEAGSQCLTAAFGRLGRLSYLTQVRPGLSLEEGMKLVVCPSEELRRLYPGYENFLEDRIEPRFPTYTWEQLCALPFALREQAHGELLH 636
            T   + ++ LL+D LP L PS LLPLLP SF   P  E+++ RL FL   LPG++L   L   P+LL+Y+G  AP MER ++  Y  LI+    KQ A+ L+ AAPR LLLRDF++R+ PYL  FT+  P L  +YLL +HPVLL+KGI S +LPRLAALP L P S  P  P+DL +L+  YP L TLPLP LS RLA+LSLLLPP LLLPTL +HPRAWTADL+EVI PQ+HLLL++LGPTTT ++LHHLPXXXXXXXXX          LLG S  G N+LL++NPMILAMD+ ANVAPKLR++ SLFP ++E  FV+L+G+ AGSQCL+AAFGRLGRLSYL Q++P + +EEGM+LV  PSEELRR YPGYENFLEDRIEPRFP Y+WEQLCALPFA+REQAHGELLH
Sbjct:  155 TSTTRRVLNLLTDALPDLDPS-LLPLLPSSFFQQPP-ERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPR-LLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPXXXXXXXXXXXXXXXXXXXLLGSS-AGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLH 562
[Close]
BLAST of NO15G00730 vs. NCBI_GenBank
Match: EWM22515.1 (hypothetical protein Naga_100952g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 478.8 bits (1231), Expect = 2.700e-131
Identity = 259/412 (62.86%), Postives = 314/412 (76.21%), Query Frame = 0 
Query:  224 TPAIKNLVALLSDELPSLSPSLLLPLLPPSFLHDPDIEQVRIRLRFLKQALPGVNLSQVLPEAPRLLSYHGPNAPEMERLISERYHRLISVTQNKQDAIALIEAAPRALLLRDFDSRVLPYLELFTSALPGLKPSYLLAKHPVLLNKGINSTILPRLAALPFLLPSSLSPLSPKDLASLVRPYPALFTLPLPSLSTRLASLSLLLPPSLLLPTLCQHPRAWTADLSEVIAPQLHLLLASLGPTTTSSILHHLPXXXXXXXXXLTQKLDLLSSLLGGSVGGVNLLLSKNPMILAMDVTANVAPKLRFVRSLFPDLEEDDFVALLGTEAGSQCLTAAFGRLGRLSYLTQVRPGLSLEEGMKLVVCPSEELRRLYPGYENFLEDRIEPRFPTYTWEQLCALPFALREQAHGELLH 636
            T   + ++ LL+D LP L PS LLPLLP SF   P  E+++ RL FL   LPG++L   L   P+LL+Y+G  AP MER ++  Y  LI+    KQ A+ L+ AAPR LLLRDF++R+ PYL  FT+  P L  +YLL +HPVLL+KGI S +LPRLAALP L P S  P  P+DL +L+  YP L TLPLP LS RLA+LSLLLPP LLLPTL +HPRAWTADL+EVI PQ+HLLL++LGPTTT ++LHHLPXXXXXXXXX          LLG S  G N+LL++NPMILAMD+ ANVAPKLR++ SLFP ++E  FV+L+G+ AGSQCL+AAFGRLGRLSYL Q++P + +EEGM+LV  PSEELRR YPGYENFLEDRIEPRFP Y+WEQLCALPFA+REQAHGELLH
Sbjct:  226 TSTTRRVLNLLTDALPDLDPS-LLPLLPSSFFQQPP-ERIQARLSFLHTTLPGIDLPHALRRVPKLLTYYGMGAPAMERRLAHTYSNLIAALPKKQAALNLLNAAPR-LLLRDFETRIEPYLHTFTTTSPTLDAAYLLTQHPVLLHKGIASHLLPRLAALPTLFPPSFPPPGPEDLGALLTRYPPLLTLPLPDLSARLAALSLLLPPDLLLPTLIRHPRAWTADLTEVIGPQIHLLLSALGPTTTKTVLHHLPXXXXXXXXXXXXXXXXXXXLLGSS-AGANVLLARNPMILAMDIAANVAPKLRYLHSLFPHMDETSFVSLVGSAAGSQCLSAAFGRLGRLSYLLQIQPDMDVEEGMRLVGAPSEELRRWYPGYENFLEDRIEPRFPAYSWEQLCALPFAVREQAHGELLH 633
The following BLAST results are available for this feature:
BLAST of NO15G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22514.12.700e-13162.86hypothetical protein Naga_100952g2, partial [Nanno... [more]
EWM22515.12.700e-13162.86hypothetical protein Naga_100952g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001534NSK001534Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00730.1NO15G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587226gene_4622Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100952g2gene7926Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00730.1NO15G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00730 ID=NO15G00730|Name=NO15G00730|organism=Nannochloropsis oceanica|type=gene|length=2392bp
ACAGCAAGGAACAACAACAACAGACACGACGACAACAACTACAAAAAACG
ACGACGATCAGGGCTACGGCGTACTGCCATGATGGTGAAGCTATCAAGAA
TAGgtaagcttaactagatttgatcagactccttccggccttgcctccct
tcccaatctcgatctcataccgtctctcccttgcaacatcattatcacac
ccaagTTGCATTCTTAGGTGTGATGCGGAAATCAAAGCGAAGGCCACCAT
CACACCCGCCACTTCTGCCTCCCTTCGTAGTCCTCGCCGTGGTCCTCGCC
TGCAGCCCTTTCCTTCTTGTACATGCCTTCCTCCGCATATCCTCTCCCTC
CATTCTTTCTAACATAGCCTCTTCCTCTTTCCTCCGAATAAGACTACAAG
CGATCACTACGTCTGATATGTGGCATTCCCCTTTAACCTCATCCTCTTCC
TCGCATTCGTCCTCGTCCGCGTCTACCTTGTCTGTCTCCCCTGGTGCTAT
CTCTGTGCCACATACACCACCACCGCTGTCCTCCCAATTCATCACCTCCG
CCGCAGCCGTCGGCGCCGTCATTAGCTCTTCACAAACAGCCCCAGCGATC
TCCCCACCATCAGCAGTCAGAAGAAGGGCGGTTCTTCCCCCCATCACTAC
CAAATCCCAACTCACGCTCCTGCAAGATCGTTGGCCTGACAACGCAGCCG
CACCAACAGCAGGAGCTGCCACAGCAGCAGCCGCAGCAGCAGGAGGATCA
GGAGCAGGAACAGCGCCGCCTGTTTTCAAGCGGAAAAAGGAATCACCGTC
ACAACAGCAGCAAAAGCAGAAACGGCGGCAGCAACCCCCTGTCCCCCATA
CTCCGGCCATCAAAAATCTCGTCGCCCTCCTCTCCGACGAACTCCCCTCG
CTCTCCCCTTCCCTCCTTCTCCCCCTCCTCCCCCCCTCCTTCCTCCATGA
TCCCGACATTGAGCAAGTCAGGATCCGCCTCCGCTTCCTCAAACAAGCCC
TTCCTGGCGTCAATCTTTCCCAGGTGCTCCCTGAAGCCCCCCGTCTGCTC
TCCTACCACGGCCCAAATGCCCCCGAAATGGAACGTCTAATCTCCGAGAG
GTACCACCGCCTCATCAGCGTCACACAAAACAAACAAGACGCCATCGCCT
TGATAGAGGCAGCACCACGCGCCCTTTTATTGAGAGATTTCGATTCGCGG
GTCCTGCCCTACCTGGAGCTCTTCACTTCCGCCCTTCCCGGCCTCAAACC
CTCCTACCTCCTTGCCAAGCACCCAGTGCTGCTGAACAAGGGCATAAACT
CCACCATCCTCCCCCGCCTCGCCGCCCTTCCGTTTCTCCTTCCATCTTCC
CTATCCCCCCTGTCTCCCAAGGACCTGGCCTCCTTGGTCCGCCCCTACCC
CGCCCTTTTCACCCTCCCCCTCCCCTCCCTCTCCACCCGCCTCGCCTCCC
TCTCCCTTCTCCTCCCCCCCTCTCTACTCCTCCCCACCCTTTGCCAGCAT
CCTCGCGCTTGGACTGCCGACCTGTCGGAGGTCATTGCTCCCCAGCTCCA
CCTCCTCCTCGCCTCACTGGGCCCCACCACCACATCGTCCATCCTCCACC
ACCTCCCCTCCATCCTCTACCACCCACCCTCAGCGCTCACGCAGAAACTC
GACCTCCTCTCCTCCCTCTTAGGGGGTTCTGTAGGTGGCGTGAACTTGCT
GCTGTCCAAGAATCCCATGATCCTCGCAATGGATGTGACGGCCAACGTGG
CGCCCAAGTTGCGATTCGTCCGCTCGCTCTTCCCGGACCTGGAGGAGGAT
GACTTCGTGGCCCTCCTCGGGACGGAGGCAGGGAGTCAATGCCTGACCGC
GGCCTTTGGGAGGCTGGGACGACTTTCATATTTAACGCAAGTTCGGCCGG
GATTAAGCTTGGAGGAGGGCATGAAGCTGGTGGTGTGCCCGAGTGAGGAG
CTGCGGCGGCTCTACCCGGGCTACGAGAACTTTTTAGAAGATCGGATCGA
ACCCCGTTTCCCCACATACACATGGGAGCAGTTGTGTGCGTTGCCGTTTG
CCTTGCGGGAGCAGGCGCACGGGGAATTGCTGCATGgtgcgtattcaaaa
aacggcggaagtaggtgacggaccctgctggtgggaaggaggaaagaagg
cataaagggagggaagatatggaaggtaagttggaaattgaaaagaaatg
tcccattctaattacaatgagtggtttgaatatcacactggaaagaattg
gagggcgggaaggctgaaacggtagagcagaagggtgagtccctccttcc
tttcttcctttctttcctcgtctgtgtttttctggatagCAAGGCCTGAG
GAGGACAGTCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAG
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protein sequence of NO15G00730.1

>NO15G00730.1-protein ID=NO15G00730.1-protein|Name=NO15G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MMVKLSRIVAFLGVMRKSKRRPPSHPPLLPPFVVLAVVLACSPFLLVHAF
LRISSPSILSNIASSSFLRIRLQAITTSDMWHSPLTSSSSSHSSSSASTL
SVSPGAISVPHTPPPLSSQFITSAAAVGAVISSSQTAPAISPPSAVRRRA
VLPPITTKSQLTLLQDRWPDNAAAPTAGAATAAAAAAGGSGAGTAPPVFK
RKKESPSQQQQKQKRRQQPPVPHTPAIKNLVALLSDELPSLSPSLLLPLL
PPSFLHDPDIEQVRIRLRFLKQALPGVNLSQVLPEAPRLLSYHGPNAPEM
ERLISERYHRLISVTQNKQDAIALIEAAPRALLLRDFDSRVLPYLELFTS
ALPGLKPSYLLAKHPVLLNKGINSTILPRLAALPFLLPSSLSPLSPKDLA
SLVRPYPALFTLPLPSLSTRLASLSLLLPPSLLLPTLCQHPRAWTADLSE
VIAPQLHLLLASLGPTTTSSILHHLPSILYHPPSALTQKLDLLSSLLGGS
VGGVNLLLSKNPMILAMDVTANVAPKLRFVRSLFPDLEEDDFVALLGTEA
GSQCLTAAFGRLGRLSYLTQVRPGLSLEEGMKLVVCPSEELRRLYPGYEN
FLEDRIEPRFPTYTWEQLCALPFALREQAHGELLHARPEEDSRQQQQQQQ
QQ*
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Synonyms
Publications