NO15G00670, NO15G00670 (gene) Nannochloropsis oceanica

Overview
NameNO15G00670
Unique NameNO15G00670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3925
Alignment locationchr15:219956..223880 +

Link to JBrowse

Properties
Property NameValue
DescriptionTpr repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:219956..223880 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
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BLAST of NO15G00670 vs. NCBI_GenBank
Match: EWM22520.1 (tpr repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 8.200e-17
Identity = 79/224 (35.27%), Postives = 90/224 (40.18%), Query Frame = 0 
Query:   84 LHVLLLGLCFLTAAAI---AAAAEESDFTEADVPDMVAQGEEWVNKRNFDGAKAILSDAIAISPSYPEAYIQLGRAHAFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQAGQAGKEGGKEEGLRRAAELYGKAVGMEPTKGYESAWFDFGVLLSQLGRHDEAAEKFEKATALNERMMDFEMLGQV 305
            L  LL  + FL  A I   A+  EE      D+  MVAQGEE VN R F  AK                   LGRAHAFT                                                                 A QA QA    G EE L +AA LY  AV   P   YESAWFD+GV+L +LGRH+EAAEK E+A A+NE  M+F MLGQV
Sbjct:   11 LPALLFAIFFLLVAFIHVYASNIEEDVLEGKDISSMVAQGEELVNSRMFTEAK-------------------LGRAHAFTGNFKEAERLYSQALSSDPSFAPAHTSLGKLYLYQKETARALQAFEKALELSPGDGDALLGLARLEALQAHQA----GGEERLHKAAALYAAAVRTSPADSYESAWFDYGVVLGRLGRHEEAAEKLERAVAMNEEQMNFNMLGQV 211
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BLAST of NO15G00670 vs. NCBI_GenBank
Match: CBJ33577.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.0 bits (206), Expect = 2.100e-12
Identity = 85/314 (27.07%), Postives = 128/314 (40.76%), Query Frame = 0 
Query:  296 MDFEMLGQVYQSFAQYPRALAXXXXXLSFNTRNPSLLYAIGQVSEALGLNDQAVEFYKKRLGIKSSSSISRVHASLGLLLAGVGVKNMGAPKACGVNREEAKKHLTAALKGWKEEEDEDVEERDEAIRNVVGEALAFCEEEEREVEVWRGRVKELKEKIALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLLAFLRLLNSFSSRLSSFVSSFFRKAQGSKEGEEGKGEG---VWL-DGKKIKSIPSVRIESKQVLMETYMAQNTPCVISNFQEGFKGREEGLWTHAGLSEAVGKEFVRVSLSATGRF 606
            +D  ++ Q++ ++    +A       L  +  +     A G++ EAL   + A + Y + L +     + + H    LLL G GV N  A  A G+N EEAK HL            E V   +E       EAL +CE EEREV+ W   ++E  ++                                     R+ L   R        + +      R+ + +  G  GK EG    W+ +     S+P V I   +  ME ++ ++ P VI NFQ+GF  +E   WT   LSE  G   VRVSLS TGR+
Sbjct:  202 LDLTVVAQMFTAYDMLEQARDTYKRLLQKDPNDAVHQLAYGELCEALNDEEGARDAYDEALRV--DPGMGKAHFRKALLLTGTGVTNQAALHAFGLNAEEAKHHLR-----------EAVASGEEGTAISAAEALKWCEMEEREVQEWSRALREDPQE------------------------------------TRERLPGERRDRQGEGGIGTGGDKTGRRNEPA--GAGGKREGAASAWVEEAGGYLSLPEVEISGPEEFMEAFVNKSKPAVIKNFQDGFAPKEAWSWT--ALSERFGDSMVRVSLSETGRY 462
The following BLAST results are available for this feature:
BLAST of NO15G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22520.18.200e-1735.27tpr repeat-containing protein [Nannochloropsis gad... [more]
CBJ33577.12.100e-1227.07conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001543NSK001543Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00670.1NO15G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437597gene_4616Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100769g2gene7921Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00670.1NO15G00670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00670 ID=NO15G00670|Name=NO15G00670|organism=Nannochloropsis oceanica|type=gene|length=3925bp
ATGCAGGATTTCGGCTGTCAAGGCTGCCAGCACAGAGGTCGTGGCTTGCA
CGCTGTCGATGGGCCGGCAATGCTGGTGCTCGAGATGGGACCATACCCGG
AACCTCGTGGCAACCTGAATGTGATCTGCCTTCCCGAAACCTTCTGTACA
CTACCTATGCGCCGGCTCGGCCAGTGCACgtaaggaatagctatatttca
actgcctcattcttggttgtagtctgagactcgaaatgcaaatttagcga
agacagaagccagaagtgaatcgccttcttcacttgctttacttagtacc
tcaccattttgacaccgtcatctcctccataccatcactaccaccacgca
cagTCCACTGATGCGGTCATCCCCATCACTCCCTCAACACGGGAGGCGGC
GGCCCCGTGGCTCGCCCTCTTTCCTGCATGTGCTTCTCCTCGGCCTCTGC
TTCTTGACCGCCGCAGCCATAGCCGCAGCAGCAGAGGAGAGTGACTTTAC
AGAAGCAGACGTCCCGGACATGGTTGCGCAGGGCGAGGAATGGGTAAATA
AACGAAATTTCGACGGGGCCAAGgtaagaaagaaggagcggagggaaagg
ggagggggggggagagggagggaaagaatgagcgtgggaggccgaaggga
gtttgggagaggaaggagggaggggagcaaaggcagtaaggctgcctggt
ggaagcctcggaggctaattgaaagtgaacagctcaaaatgaacacagca
tgcttcggatgatgatggagctgcttccattttcacgccgccttcgctcc
ctcccctcctccctccctccctccgtccagGCCATCCTCTCTGACGCAAT
CGCCATTTCTCCTTCTTATCCCGAAGCGTACATTCAACTTGGCCGCGCCC
ATGCCTTTACGAGCAACCTTGCTGAAGCCGAGCGTCTCTATAAACACGCC
CTTGTCCTCCAGCCCTCCTTCGCCCCTGCCCACACTTCCCTCGGTAAATT
GTATTTATTCCAAAAGCAAACCCAGAAAGCGCTGGTTGAATTCAAAAGGG
CCCTCGATCTATCACCTGATGATGGAGATGCTTACCTGGGCCTGGCGAGA
CTCGAGGCCCAACAGGCCGGGCAAGCAGGGAAAGAGGGAGGGAAAGAGGA
AGGGTTGAGGAGGGCGGCGGAGCTGTACGGGAAAGCGGTGGGGATGGAGC
CGACGAAGGGTTACGAGTCAGCTTGGTTCGATTTCGGGGTACTCTTGTCG
CAATTGGGGAGGCACGACGAGGCAGCGGAGAAATTCGAAAAGGCGACGGC
ATTGAATGAACGTATGATGGATTTCGAGATGCTTGGACAGgtaggtagga
aagcaagccctccctccctccctccctccctccctccctcattgtatata
ggcaaattctttttccaacacgccgagtgctaattcgtagacttcattga
caaaaaaaatatgaactctccccaaaaaagtaaataaataaatataaaaa
tatataaaataatttttaaaataatcaataaattgatggaatttcaaaca
atattcttccatcctccctacagGTCTATCAATCCTTCGCGCAATATCCT
CGCGCCCTGGCCGCGTACGAGAGAGCCCTTTCCTTTAATACCCGCAACCC
CTCCCTCCTTTACGCAATTGGGCAAGTCTCGGAGGCCCTCGGCCTCAACG
ACCAAGCCGTTGAATTTTACAAGAAACGCCTCGGTATTAAAAGTAGCAGC
AGCATCAGCAGGGTACATGCTTCGTTAGGGTTGTTGCTGGCTGGGGTGGG
TGTGAAGAATATGGGCGCGCCAAAGGCCTGCGGAGTGAATCGAGAAGAGG
CGAAAAAACATCTAACAGCAGCGCTGAAGGGATGGAAGGAGGAAGAGGAC
GAGGACGTGGAAGAGAGGGATGAAGCGATCCGGAATGTCGTAGGAGAGGC
TTTGGCATTCTGCGAGGAGGAAGAAAGGGAGGTTGAGGTCTGGAGGGGGA
GGGTGAAGGAGTTGAAGGAGAAAATCGCCCTTCCTCCCCTTCCTCCCTCC
AGTCCTTCTCTTCCTCACTCCAATACTGCACCCAAACAGCAAGTGCAGCA
GCAGCAACAGCAGCAGCCACGAAACCCTGTCGTGAGGCAGTTGCTTGCCT
TCCTCCGCCTCCTTAATTCCTTCTCCTCCCGCCTCTCCTCCTTCGTCTCC
TCCTTCTTCCGGAAAGCCCAGGGCTCGAAGGAGGGCGAGGAAGGGAAGGG
CGAAGGGGTGTGGTTGGACGGGAAAAAGATCAAGAGCATTCCCTCCGTGC
GGATCGAGAGCAAGCAAGTACTGATGGAGACCTACATGGCGCAAAACACC
CCGTGTGTGATTAGCAATTTCCAGGAGGGGTTCAAGGGGAGAGAGGAAGG
CTTGTGGACGCACGCGGGGTTGAGCGAGGCGGTGGGGAAGGAGTTTGTCA
GGGTTTCCCTGTCGGCCACGGGGAGGTTTGATGGCCCGGAGGATGGGGCA
CTGTGGAGGCACGACGGGGGGGGGGGGAAGACGAGGTGGAGGAGGTGCTG
GTCCGGCCTCCTCAGACCTCAATGCGAATGGACGACTTCCTATCCCTCCT
CCGACTGTCCCAAGCCAACCCCTCCCTCGCGCCCAACGCCACGTTTTATC
TGGAATATCTCTCCCTCACCCAATACCTGGGCCCCGCCCTCCTTCCCTCC
CTCCCCCTCCCTCCCCCGCCGCTGCTGCGGTTGCTGCCGGGGCTGCCGGC
GAAGAAGGGGGGCTGGAGCTGTTGCTCACTAACCTGTGGGTGGGGAAGGG
CGGAACGACGAGCCCGCTGCACTACGACGATTATGAAAACATCTTGTGTC
AGCTGGCGGGGAGAAAAGAGTTGACGCTGTTCCCACCCATGGACATTTTC
TACCTCTACTACTCTACGCGGGTGAAAGGGGAGCTGAAGTACGTGTACCC
AGATACGTTCGAGCGAATGCCTGTGAAGGAGGGATTGAGCAAGGTGGTAT
TTGGGTCGTCGGTGTTGTTGGAGGATCCGGATCTGACAAGACACCCGGAA
GTGGTGAAAGCCACGCCTTACCGGGTGAGTTTAAAGGAGGGGGAATGCTT
GTACCTACCTGCGTACTGGCACCACGAGGTGAAGAGTGTCGCAGATGAGG
GGGGGGGGTTGAATGTGGCAGTGAATTATTGGTTTAAGAACGTGACGAGG
TTCGAGAAGGAGGGCGCGGGGCTGGCTGCGGCTACCCGGGCGGAGAAGGA
GAGAAAAAAGAGGATGAAGGAAGGGAAAAGGATGGCATGAAGGAGGAATG
GAGGAAGATGGGCGGTAATGAGTAATGATGAGGAATAGGCGAATAGGAAG
GATGCCGACCGTGTGGCTCGGGTAGAGGGTTCCATCAACCACGATGAGCG
GAAAGCAGTCTGCAACAGACGGCAAGGAATGATGGGAGAGGAGGGGAGAC
GGGCACATACTTAAATTGAAGACATGTTAGAAAATGGCCTGTGGGGGTGG
ACGCGCGCTCGCCATACACACCCACACATTTAGGTGAGAAGGGCGAGGGA
CGGAGAGAAAAGAGGGAAATGAAAAAGCACAGCAAAAGCACGCAAGATCT
AATTTTATTTAAATAACACCACCATTTTATTCCCTGTCTTATGTATTGTA
CTTTTTTTCGTGTGCCACATTCTTGCTCCATCCTCCCCCCTTCCCCACTT
TCCTCTCTCCCTACCCCCTTCACTTCTTGTCTTCCTTCGCTCATGCTGCG
GGCGTGGATGGCTTCTCGACAATTTGCATCATTTCATCCAGCCACTGTAC
AACGAGGTATATGCATGTATACGTGAGTGTGTGTGCATACGTGTGTGTAA
ATATGTGTATACAAGCGCGTATCCTCATGAGGGAAAAGAAATAAGACACA
ATCGGTCTCTCTGTTGATTTTTCAA
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protein sequence of NO15G00670.1

>NO15G00670.1-protein ID=NO15G00670.1-protein|Name=NO15G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=706bp
MQDFGCQGCQHRGRGLHAVDGPAMLVLEMGPYPEPRGNLNVICLPETFCT
LPMRRLGQCTPLMRSSPSLPQHGRRRPRGSPSFLHVLLLGLCFLTAAAIA
AAAEESDFTEADVPDMVAQGEEWVNKRNFDGAKAILSDAIAISPSYPEAY
IQLGRAHAFTSNLAEAERLYKHALVLQPSFAPAHTSLGKLYLFQKQTQKA
LVEFKRALDLSPDDGDAYLGLARLEAQQAGQAGKEGGKEEGLRRAAELYG
KAVGMEPTKGYESAWFDFGVLLSQLGRHDEAAEKFEKATALNERMMDFEM
LGQVYQSFAQYPRALAAYERALSFNTRNPSLLYAIGQVSEALGLNDQAVE
FYKKRLGIKSSSSISRVHASLGLLLAGVGVKNMGAPKACGVNREEAKKHL
TAALKGWKEEEDEDVEERDEAIRNVVGEALAFCEEEEREVEVWRGRVKEL
KEKIALPPLPPSSPSLPHSNTAPKQQVQQQQQQQPRNPVVRQLLAFLRLL
NSFSSRLSSFVSSFFRKAQGSKEGEEGKGEGVWLDGKKIKSIPSVRIESK
QVLMETYMAQNTPCVISNFQEGFKGREEGLWTHAGLSEAVGKEFVRVSLS
ATGRFDGPEDGALWRHDGGGGKTRWRRCWSGLLRPQCEWTTSYPSSDCPK
PTPPSRPTPRFIWNISPSPNTWAPPSFPPSPSLPRRCCGCCRGCRRRRGA
GAVAH*
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Synonyms
Publications