NO15G00550, NO15G00550 (gene) Nannochloropsis oceanica

Overview
NameNO15G00550
Unique NameNO15G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1248
Alignment locationchr15:178683..179930 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:178683..179930 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00550 vs. NCBI_GenBank
Match: XP_005852767.1 (hypothetical protein NGA_0721200, partial [Nannochloropsis gaditana CCMP526] >EKU23065.1 hypothetical protein NGA_0721200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.5 bits (280), Expect = 1.800e-21
Identity = 70/134 (52.24%), Postives = 86/134 (64.18%), Query Frame = 0 
Query:   13 PSLANVARFLYSRIAPIAQPLRLPPPNRKKGGLRRVREVRKTRSESVG-GKEDENENEGQWRLNPLYVQEHMKGIASDAVGPQFEALASVLPHLSFYPLPSLALFLHQLVHLLPLITSPTYQAVIVGFIESIEW 146
            PSL +V R LY R+ P   P+ LP  N   G     R+V     ES G G +D+ E   Q  LNPLYV +H + IASDAVG QFEALASVLPHL  Y L SLALF  QL+ L  L  SPTY+A++VGF+E+++W
Sbjct:   10 PSLPSVTRALYERVIPNDHPVLLPADNLVTG----ARKVSNGGRESSGQGWDDKGE---QSLLNPLYVMKHAEAIASDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDW 136
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BLAST of NO15G00550 vs. NCBI_GenBank
Match: EWM23540.1 (hypothetical protein Naga_100961g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-15
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0 
Query:   86 IASDAVGPQFEALASVLPHLSFYPLPSLALFLHQLVHLLPLITSPTYQAVIVGFIESIEWPLLAAVAAEAKFVSAS 162
            + SDAVG QFEALASVLPHL  Y L SLALF  QL+ L  L  SPTY+A++VGF+E+++WPLL AVAAEA+   +S
Sbjct:   64 LTSDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDWPLLTAVAAEARRAPSS 139
The following BLAST results are available for this feature:
BLAST of NO15G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852767.11.800e-2152.24hypothetical protein NGA_0721200, partial [Nannoch... [more]
EWM23540.12.600e-1563.16hypothetical protein Naga_100961g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00550.1NO15G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00550.1NO15G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00550 ID=NO15G00550|Name=NO15G00550|organism=Nannochloropsis oceanica|type=gene|length=1248bp
ATTCCTCTCTCGCTTTGTCCCTGTGTGTGTGTCACATGGATGTGTTGGTG
CTCGACGCATTCGGACGCCGTACTGCAACACTATACCACCTTCATAAATT
CGGGCGCGGGGCGCGGGACATGTGCAGTCGCTCGCCAAGCGCACCAGACG
GCAGCGCCACTAGTCTAAGTTGTACTCAGGTGCACGAAACGCAGGCACAT
GCACTAGGGACGTCTCGAGGTCTCTTTTCCTCCTAAAAATGATCCTGCCT
CGCCAGCAAAAAAGCATCCGAGTCTCCCAAAAAGAAGTCCTGTACCACTC
GGCACTCATGTCTCTGCCCCCCTCCTATTCCCACAGCACACCAAACACAA
TTACCAGCATCCGTACAAAAGCATAGACGTGCAAAAAGGGTTGCTGCCCC
CCCCTTCGATGGAGTCCACAGCGTCATCCCTTGCTTCTGCTCCCCCATCC
TTGGCTAACGTTGCCCGCTTTTTGTACTCCCGCATAGCGCCCATCGCCCA
GCCCCTCCGTCTTCCACCTCCTAATCGAAAAAAGGGAGGACTCAGAAGAG
TACGAGAAGTACGGAAGACAAGGAGTGAAAGCGTTGGAGGGAAGGAGGAT
GAGAACGAGAATGAGGGGCAATGGCGGCTGAACCCTCTGTATGTCCAGGA
GCATATGAAGGGGATTGCAAGgtacgggtgttagacatgaagagtaaggg
taaccaaacatgagggagaagaaagacagttgatctctgaccatctctca
acgatccatttactcagtttcccttcgccttattttcattccttcccctt
cctgcacagCGACGCCGTAGGACCGCAATTCGAGGCTTTGGCCTCCGTCC
TCCCCCACCTCTCCTTCTACCCCTTGCCATCACTAGCTCTTTTTCTCCAT
CAGCTCGTTCATCTCTTGCCTTTAATCACTTCTCCGACGTACCAAGCTGT
CATTGTCGGGTTTATAGAGTCAATCGAGTGGCCGTTACTCGCTGCCGTTG
CTGCGGAGGCAAAATTTGTATCTGCCTCCTCCTCCTCCTCCTCCGCCTCC
TCCTCTTTTTCTTCTGCGATGAATTTTCAGGAAGGAGGGCGGGAAGGAGG
GAGGGAGGGAGGAGGGGGATTGGGATCCATGGAATGGACGGCGTCGTCTT
TGGCAGGAGGGCAGCAAGGGGGGGAGGAGGAGGAGGAGGGGGGGAGGAGG
GGGAGGGAGAGGGGTAGGAGGAGGAAGTGCCCTCCCGCCCTTGCATGA
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protein sequence of NO15G00550.1

>NO15G00550.1-protein ID=NO15G00550.1-protein|Name=NO15G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MESTASSLASAPPSLANVARFLYSRIAPIAQPLRLPPPNRKKGGLRRVRE
VRKTRSESVGGKEDENENEGQWRLNPLYVQEHMKGIASDAVGPQFEALAS
VLPHLSFYPLPSLALFLHQLVHLLPLITSPTYQAVIVGFIESIEWPLLAA
VAAEAKFVSASSSSSSASSSFSSAMNFQEGGREGGREGGGGLGSMEWTAS
SLAGGQQGGEEEEEGGRRGRERGRRRKCPPALA*
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Synonyms
Publications