NO15G00520, NO15G00520 (gene) Nannochloropsis oceanica

Overview
NameNO15G00520
Unique NameNO15G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length755
Alignment locationchr15:172077..172831 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:172077..172831 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00520 vs. NCBI_GenBank
Match: EWM23536.1 (hypothetical protein Naga_100416g3 [Nannochloropsis gaditana])

HSP 1 Score: 117.1 bits (292), Expect = 6.300e-23
Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 0 
Query:    5 LYQDLDVPASAVATHELETRLQAAQGRITTLEQKAALVGRECVSLRKENEVLRTNISSLYNTAKRELGRKDAELQSLREQVRALGKQLQNGGGGREGG 103
            LY+DLD+P + VAT ELE RL AA  RI TLEQKAALVG+ECV+LRKEN+VLR NISSLY TAKREL RK+ E+  LREQV++        GGGR GG
Sbjct:    6 LYEDLDIPPAVVATQELEARLDAAYSRIATLEQKAALVGKECVTLRKENDVLRVNISSLYKTAKRELERKETEVIKLREQVQSW------QGGGRRGG 97
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BLAST of NO15G00520 vs. NCBI_GenBank
Match: OQS02951.1 (hypothetical protein THRCLA_21284 [Thraustotheca clavata])

HSP 1 Score: 63.5 bits (153), Expect = 8.300e-7
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 0 
Query:    1 MEDDLYQDLDVPASAVATHELETRLQAAQGRITTLEQKAALVGRECVSLRKENEVLRTNISSLYNTAKRELGRKDAELQSLREQV 86
            M DDLY DLD     +++  L+ +LQA Q +   L+ +A  +      L K N++L  N+S+LY+TA  E+ RKD  +QSLR+++
Sbjct:    1 MADDLYSDLDTSVGGLSSVHLKAQLQALQAKYDALQVEAGNLQHANSELGKRNQILERNLSALYSTAMTEIARKDKAIQSLRQEL 85
The following BLAST results are available for this feature:
BLAST of NO15G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23536.16.300e-2366.33hypothetical protein Naga_100416g3 [Nannochloropsi... [more]
OQS02951.18.300e-738.82hypothetical protein THRCLA_21284 [Thraustotheca c... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001564NSK001564Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00520.1NO15G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670397gene_4604Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100416g3gene6917Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00520.1NO15G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00520 ID=NO15G00520|Name=NO15G00520|organism=Nannochloropsis oceanica|type=gene|length=755bp
GTTGCGCAAGTCTGCTTAGGAATGGGGGCGTATTCTGCTTTCCTGTCGAC
CTCCTGCCTCTCCAGGAGCCCACCCCCCTTCTGTCTCTCGCTCGGGCAAC
ACACCCAAAGCAATAATCCCAAAATACATGCACAACACAGTGTAGCAAAG
CAGCAATGGAGGACGATCTCTACCAAGATCTGGACGTCCCCGCCTCGGCC
GTTGCTACGCACGAGCTGGAAACCCGCTTGCAAGCCGCGCAGGGCCGTAT
CACCACTCTCGAGCAAAAGGCAGCCTTGGTGGGGCGGGAATGCGTGAGCT
TACGGAAAGAGAATGAAGTGCTACGAACAAATATATCTTCTCTTTACAAC
ACGGCCAAGCGGGAGCTGGGGAGGAAGGACGCGGAGCTACAGAGCTTGAG
GGAGCAAGTGCGAGCATTGGGGAAACAATTGCAGAACGGAGGTGGAGGGA
GAGAAGGAGGGAGAGAAGACGGAGGAGAAGGGCGGAGGGAAGGTGTAAGG
GAAGAAAGGAGTGTGGTGAGGAAGCAGGGATTGAGAGAGCAGAGGAGGGA
AGGAGGGTGGGTAGCGTGCAATGGAGGAGGGAGAGAAGAAAGGAGAGCCG
ACAGATGGGAGTGGGAAAGAAAAGGAGAGAAAGAAAGAGGACAGAAAGAG
AGCAGGGAGGAGCGAAGGGAAGTGGGCAAGGAGGAAAAGAGGGAAGTGTG
GAAAGGGGAAGGGAGAAGTGAACGGGGGAGGGAGGGAGGGAGGGATAGGC
GATGA
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protein sequence of NO15G00520.1

>NO15G00520.1-protein ID=NO15G00520.1-protein|Name=NO15G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MEDDLYQDLDVPASAVATHELETRLQAAQGRITTLEQKAALVGRECVSLR
KENEVLRTNISSLYNTAKRELGRKDAELQSLREQVRALGKQLQNGGGGRE
GGREDGGEGRREGVREERSVVRKQGLREQRREGGWVACNGGGREERRADR
WEWERKGEKERGQKESREERREVGKEEKREVWKGEGRSERGREGGRDRR*
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Synonyms
Publications