NO15G00480, NO15G00480 (gene) Nannochloropsis oceanica

Overview
NameNO15G00480
Unique NameNO15G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1904
Alignment locationchr15:163533..165436 -

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Properties
Property NameValue
DescriptionAnkyrin repeat domain-containing protein 17, BCL-6 corepressor-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:163533..165436 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO15G00480 vs. NCBI_GenBank
Match: OWW37805.1 (Ankyrin repeats (3 copies) family protein [Aspergillus niger])

HSP 1 Score: 64.3 bits (155), Expect = 8.600e-7
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:   92 TSIHQAAAR-GAVSLVNHFLESSCETLNARDTQGRTPLMHACQWGQYLVCRLLLDRNAHVNAVDFHRRNALYWTLVTSGASVKIVELLLERGVDV 186
            T++H A AR G V  +   LE+   T N +  QGRTPL++A    Q  V   LLD+++  +A+D H  +AL++ + +   S++ ++ LL+ GVDV
Sbjct:  330 TALHLAIARLGTVPAIQPLLEAEAST-NIKGRQGRTPLLYALYLEQEAVATALLDKDSDPHALDNHSFSALHYAVASRTISIQFIQRLLDAGVDV 423
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BLAST of NO15G00480 vs. NCBI_GenBank
Match: SPB51486.1 (unnamed protein product [Aspergillus niger])

HSP 1 Score: 64.3 bits (155), Expect = 8.600e-7
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 0 
Query:   92 TSIHQAAAR-GAVSLVNHFLESSCETLNARDTQGRTPLMHACQWGQYLVCRLLLDRNAHVNAVDFHRRNALYWTLVTSGASVKIVELLLERGVDV 186
            T++H A AR G V  +   LE+   T N +  QGRTPL++A    Q  V   LLD+++  +A+D H  +AL++ + +   S++ ++ LL+ GVDV
Sbjct:  365 TALHLAIARLGTVPAIQPLLEAEAST-NIKGRQGRTPLLYALYLEQEAVATALLDKDSDPHALDNHSFSALHYAVASRTISIQFIQRLLDAGVDV 458
The following BLAST results are available for this feature:
BLAST of NO15G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
OWW37805.18.600e-736.84Ankyrin repeats (3 copies) family protein [Aspergi... [more]
SPB51486.18.600e-736.84unnamed protein product [Aspergillus niger][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00480.2NO15G00480.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G00480.1NO15G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|437006gene_4600Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00480.2NO15G00480.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G00480.1NO15G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00480 ID=NO15G00480|Name=NO15G00480|organism=Nannochloropsis oceanica|type=gene|length=1904bp
GTTTGAATAACGGTTGCTGAGCGTTCTCCTCCCCTTCTTTCCCTCGACGT
AATTATTACCTTACCAGCGCACATTCATCCCTCCTCGCTCACCACTTAAA
ACGCATAGACAGTCATGCTTCTCTTCAATCATATCAGACCGTTTCCTTTC
TGCTATGTGCGCGGCGTGATTTCGCTGTCCGCCTTGCAGAAGGTGTATAT
GGAATTTAGGGCGTTCGTTGCCTTTGCTTGCATGCCGTTCGTGACGTACC
CGAAACACCCTTCTCTTTGTGCACCCACATCGACACACTTACATTATAAT
TTCGCGCATGTTACACAGATTTTAATCTGCAGACGCCATCGTCTTTGTTC
CTTCTTCCGGCACCGCCGCCATTTTACAACCAGCATGACATCGATCCACC
AAGCCGCCGCTCGGTAAGCCCGCCTCTTTCCCTTCCTATCCCCCGCCTTC
CTTTAATCGTCAGTTCCCAGCCAATTTGACCATCGATCTTCCATCTTTCA
TTCCTTCTTAGCGGTGCCGTCTCCCTAGTCAACCATTTCCTTGAATCCTC
CTGCGAGACACTTAATGCCCGTGACACCCAAGGACGCACTCCACTCATGC
ATGCTTGCCAGTGGGGGCAATACCTAGTATGCCGTCTTTTGTTAGACCGG
AATGCGCATGTTAATGCGGTTGACTTTCATCGGCGTAATGCCTTGTACTG
GACCCTAGTCACATCTGGGGCGAGTGTGAAGATTGTGGAGTTACTGTTGG
AGAGAGGGGTTGATGTAATGGGAGGGAGGGATTGTCCTTCTTTCCTTCCT
TCCTCATGTTTGGTTGGTGGGAGGAGGCGGAGGAGGAAGAGGAGGAGTGG
GTCTCGTGGACGAGAAAGAGGAGAAGAAGGAGAAAGGGGTGAGGTGGAAG
TAAAGGAGGAGGAGGAAGAGGACGAGGAGGAGGAGGGATTTCGTGGAGGA
GGGGCAGGCATGACATTTCTGATGCGCAGgtgagtgaagatgaaggtaaa
ggaggaggtgggggaacgaatagagggagggagagagtttagatagggat
cagaggcggaagtgggataagaggagtcattcacaaggccgtctacaccc
aatcatcctccctccttcctccctccttccatccctcactccctccctgt
ctctgtagTTGCGCCCTCGGGTACGAGCAGATTGTCCGTCTCTTTCTTCG
TCATGGTGGCAGTGATGTTAACGCCCGCGACCGTTACGGGAAAACGGCCC
TGCACCATGCCTGCGAGCGAGGGAGGGAGAAAGTTGTGGGTCTCCTACTG
GAGGGGGGAGGGAGGGAGAGAGGGAGGGAGGGCAGCAGGTGGATGTCGAA
ATCAGGGATAGGGATGGAAGGACGGCGAGAGAGGTGGGGGAGGGATGGGG
ACAAGAAGGGTGTGTGCAGCTGGTGGTGGGGGAGGAGAGGAGGTACATGA
TCTGGAAACTTCGGAGGATGGAGGAAGGACGGGAGGGGGGGAGGGAGGGG
CAACGGTTGAGATCGCGGGTGGTGTTCGCAGGGGAGGGGGGGAAGATGGT
GAGAAGTAGATGTGTGGAAGGAGAGAAGATGGGGAGGACCAAAATGGAGG
TGAGGAAGGAGGAGAGGGAAGGAAGGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGAGGAGAGGGAGGAGGAGAGGAAGAGGAAAGCTGTATTACGCTTTGT
GGTGAGTGAGACGGAGGGAGGGGAGGGATTATCGCAGGAGCTGTTCAGAG
AGTGGATTGAGGGATACATGGGCATGAGGTGATGAGGAGGGAGGACGGGA
GGAAGGGAGGAAGGGAAGAAGCGAAGAATATTTGCATATATTTGTACGAG
TAGATATGCATGTGTGTCTACATATGTCAGTGTATGGAAAAAACAGTCAC
TATG
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protein sequence of NO15G00480.2

>NO15G00480.2-protein ID=NO15G00480.2-protein|Name=NO15G00480.2|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MHACQWGQYLVCRLLLDRNAHVNAVDFHRRNALYWTLVTSGASVKIVELL
LERGVDVMGGRDCPSFLPSSCLVGGRRRRRKRRSGSRGRERGEEGERGEV
EVKEEEEEDEEEEGFRGGGAGMTFLMRSCALGYEQIVRLFLRHGGSDVNA
RDRYGKTALHHACERGREKVVGLLLEGGGRERGREGSRWMSKSGIGMEGR
RERWGRDGDKKGVCSWWWGRRGGT*
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protein sequence of NO15G00480.1

>NO15G00480.1-protein ID=NO15G00480.1-protein|Name=NO15G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MLLFNHIRPFPFCYVRGVISLSALQKVYMEFRAFVAFACMPFVTYPKHPS
LCAPTSTHLHYNFAHVTQILICRRHRLCSFFRHRRHFTTSMTSIHQAAAR
GAVSLVNHFLESSCETLNARDTQGRTPLMHACQWGQYLVCRLLLDRNAHV
NAVDFHRRNALYWTLVTSGASVKIVELLLERGVDVMGGRDCPSFLPSSCL
VGGRRRRRKRRSGSRGRERGEEGERGEVEVKEEEEEDEEEEGFRGGGAGM
TFLMRSCALGYEQIVRLFLRHGGSDVNARDRYGKTALHHACERGREKVVG
LLLEGGGRERGREGSRWMSKSGIGMEGRRERWGRDGDKKGVCSWWWGRRG
GT*
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Synonyms
Publications