NO15G00460, NO15G00460 (gene) Nannochloropsis oceanica

Overview
NameNO15G00460
Unique NameNO15G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3881
Alignment locationchr15:154552..158432 +

Link to JBrowse

Properties
Property NameValue
Descriptionreceptor homology region transmembrane domain ring H2 motif protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:154552..158432 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003137Protease-assoc_domain
IPR001841Znf_RING
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: CBJ30776.1 (similar to ring finger protein 167 isoform 1 [Ectocarpus siliculosus])

HSP 1 Score: 85.5 bits (210), Expect = 4.400e-13
Identity = 70/269 (26.02%), Postives = 110/269 (40.89%), Query Frame = 0 
Query:   69 GCTFEEKLRKVEKAGAAAFLIFDA-QEGPLIQTRSKRKGGRGEGREGGADGGEAVVSIPAVMISHQAGLYLLQLLXXXXXXXXXPLDIHVVIDDKEPFPILLSTPNLGLLSLLLAVIVLLVLGAAVLFLPPALVQRXXXXXXXXXXXXXXXXXXXXXEGVMPLSDVLALPTVCVKRSWGSPSSLAPSLDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVT 337
            GCTFE K+   + AG +  +++D+ QE      RS  KG +              V IP V+++H +GL L  L+              V +D+ +PF + ++      + +   ++ LL  G+ ++      ++R                        M L +VL LP V V+                                               C +CLEA+  G+ L++LPC+HAFH+GCITPWLT+R R+CP+CK  VT
Sbjct:  151 GCTFETKVLNAQAAGFSMVIVYDSRQENMFKMGRSSAKGAK-----------HPKVEIPLVLVTHASGLALKALIATTSDNRGP----EVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRP-------------MSLPEVLQLPEVRVEEG--------------------------------------SRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVT 353
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_011325920.1 (hypothetical protein FGSG_11324 [Fusarium graminearum PH-1] >ESU18298.1 hypothetical protein FGSG_11324 [Fusarium graminearum PH-1] >CEF85923.1 unnamed protein product [Fusarium graminearum])

HSP 1 Score: 75.1 bits (183), Expect = 5.900e-10
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSS 339
            CSIC E FVEG  L+ LPCRH +H  CI PWLT R RTCPLC++  T+S
Sbjct:  146 CSICTEDFVEGVKLRMLPCRHLYHPQCIDPWLTNRSRTCPLCRVNFTTS 194
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: EYB23300.1 (hypothetical protein FG05_11324 [Fusarium graminearum])

HSP 1 Score: 75.1 bits (183), Expect = 5.900e-10
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSS 339
            CSIC E FVEG  L+ LPCRH +H  CI PWLT R RTCPLC++  T+S
Sbjct:  146 CSICTEDFVEGVKLRMLPCRHLYHPQCIDPWLTNRSRTCPLCRVNFTTS 194
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: PTD08575.1 (hypothetical protein FCULG_00012461 [Fusarium culmorum])

HSP 1 Score: 74.7 bits (182), Expect = 7.700e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSS 339
            CSIC E F+EG  L+ LPCRH +H  CI PWLT R RTCPLC++ +T+S
Sbjct:  146 CSICTEDFLEGVKLRMLPCRHLYHPQCIDPWLTNRSRTCPLCRVNLTTS 194
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_010891752.1 (PREDICTED: E3 ubiquitin-protein ligase RNF167 [Esox lucius])

HSP 1 Score: 74.3 bits (181), Expect = 1.000e-9
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSS 339
            C+ICL+ + EG+ L+ LPC HA+HS C+ PWLTE  +TCP+CK  VT S
Sbjct:  241 CAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTETKKTCPVCKQRVTRS 289
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_012218002.1 (PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Linepithema humile] >XP_012218004.1 PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Linepithema humile] >XP_012218005.1 PREDICTED: E3 ubiquitin-protein ligase RNF13-like [Linepithema humile])

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSS 339
            C+ICL+ +VEGE L+ LPC HA+HS CI PWLT+  R CP+CK  V +S
Sbjct:  233 CAICLDDYVEGEKLRVLPCAHAYHSKCIDPWLTKNRRVCPVCKRKVFAS 281
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: KFH72474.1 (hypothetical protein MVEG_02765 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-9
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCK 333
            C++CL+ F EGE L+ LPCRH FHS CI PWLT +  TCPLCK
Sbjct:  478 CAVCLDEFEEGEELRLLPCRHEFHSECIDPWLTRKSSTCPLCK 520
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_014472330.1 (PREDICTED: E3 ubiquitin-protein ligase RNF13-like isoform X1 [Dinoponera quadriceps])

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-9
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLV 336
            C+ICLE +VEGE L+ LPC HA+HS CI PWLT+  R CP+CK  V
Sbjct:  236 CAICLEDYVEGEKLRVLPCAHAYHSKCIDPWLTKNRRVCPVCKRKV 281
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_014472338.1 (PREDICTED: E3 ubiquitin-protein ligase RNF13-like isoform X2 [Dinoponera quadriceps])

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-9
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLV 336
            C+ICLE +VEGE L+ LPC HA+HS CI PWLT+  R CP+CK  V
Sbjct:  233 CAICLEDYVEGEKLRVLPCAHAYHSKCIDPWLTKNRRVCPVCKRKV 278
[Close]
BLAST of NO15G00460 vs. NCBI_GenBank
Match: XP_015438483.1 (PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Dufourea novaeangliae])

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0 
Query:  290 CSICLEAFVEGETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTS 338
            C+ICL+ ++EGE L+ LPC HA+H+ CI PWLT+  R CP+CK  VT+
Sbjct:  232 CAICLDDYIEGEKLRVLPCAHAYHAKCIDPWLTKNRRVCPVCKRKVTA 279
The following BLAST results are available for this feature:
BLAST of NO15G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ30776.14.400e-1326.02similar to ring finger protein 167 isoform 1 [Ecto... [more]
XP_011325920.15.900e-1063.27hypothetical protein FGSG_11324 [Fusarium graminea... [more]
EYB23300.15.900e-1063.27hypothetical protein FG05_11324 [Fusarium graminea... [more]
PTD08575.17.700e-1061.22hypothetical protein FCULG_00012461 [Fusarium culm... [more]
XP_010891752.11.000e-957.14PREDICTED: E3 ubiquitin-protein ligase RNF167 [Eso... [more]
XP_012218002.12.200e-959.18PREDICTED: E3 ubiquitin-protein ligase RNF13-like ... [more]
KFH72474.12.900e-965.12hypothetical protein MVEG_02765 [Mortierella verti... [more]
XP_014472330.12.900e-963.04PREDICTED: E3 ubiquitin-protein ligase RNF13-like ... [more]
XP_014472338.12.900e-963.04PREDICTED: E3 ubiquitin-protein ligase RNF13-like ... [more]
XP_015438483.12.900e-956.25PREDICTED: E3 ubiquitin-protein ligase RNF167-like... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR040ngnoR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00460.1NO15G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00460.1NO15G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00460 ID=NO15G00460|Name=NO15G00460|organism=Nannochloropsis oceanica|type=gene|length=3881bp
ACCCCGATAATACTATTGATGGTTGCTCAGCTTATAGGATGTTTTCTTTC
TTTTTCCTTACTTATTCAAGGGGGTTTGGTTTGTGTGTGAACGATACGGG
AGGCCCGGACACGAGGGCCATCCGAGCCGTAGACCACACACTGGCCTCGG
CTGTGATTGACTGTGCTGTGCAGGTAGCCTTCCCGCCGCAGCCCTGCATG
GCACCGCGCCTCGTCCATCACGATGTGCATAGCACGGCGTACTTCCGAAT
AAAACGTGACCGAGGACTTGTCAAGGCGGACATGGAATATAGGCCGAAAG
ATGCAAAGACCCTCCGTGCATTTCACCTGCGGCTTCATCCGCTGCACGGC
CCCAAGCACCCACCCTTTCCGCTGGGCGGCTCCTCGATGGCCTCGATCGT
ACTTTCTTTTTGCAAACTTCGCCTCATCGATCTCCACGCACAAATCTGGG
TCGCCTATCTTGAAATTTACTTTGTGGTCAGAATTGGCACGTTTTAATTA
GGTCTCTGTATTGCATGAGAAATTAAATAGAGTCAAGGCAGTAATACCAT
CCAAATGCCCTCACAATACCCCCTTGAAAAAAAACGAAAAAGAAAGAGAA
CTATGAGAACTCTGAACAACTGGCAAAACGGCTACGACCGCTTTCGCTCT
GTGTGTGGCTTTTAATCCTACATTTCTCCTCTTCTGACCCACGCACACTG
TACACACATGTGGCATAAAAACGCTTCCGCACAAATGTTCAGGACACTTC
AAAGATCACTTCCCTGTCATATGGATTGTACACCGTCCCTTATATATGAC
TTGTTCAGCGATCGACTAGCGGTCTAGCAAACAGTGATCAGGCCTCTCGC
TCGCTCGACGACGCATTCGTAGAAGCGCCATAGAAAAGGCCGCCGGAAAG
CCCGCCGATTCCACTTTCAGCATCACACAGATGAAGTCGGACGTCTTGTG
TCGATTTACTCATGTGGAAAAGCCGATTTCGTCTTGGTTGCTGACTAATT
TTGCTCATGAAGCGCCATGATTATCGGACTCGGACCCACTGAGCATAAAT
GAAGTAAAACCACGAACGGAAACCACCTCCCTTTCTACTTCACTTTGTCC
TTGGCATCATCTCCTCGCTGACATTCTCCACTCATTCCCCACAAAAAAAG
CAAACCCTACATGTCAGCACCACCACGTACACCACCTAGCCTCCTACCGA
TACCGATACACCTCCTCCTCCTCCTCCTCCTTCCCCTCCTCCTTCTCCCA
ATACTTACCCACGCCGATCTTCGCGTCATAATCAATGGACACACAAAACT
GCATACCATCGACTTGCCTGCCAGTTTCGGTGCCCGCATCCCTTCCCAAG
GCCTCTCGGGCCGACTGGTTGCCGCCTCCTCCTTCCTCGACGCTTGCCCG
CCCTCGACTCCTCTGTCCCCCTCATTCCCTCCCGTCCTCCCTTCTCCTCT
TCCACCACCGAACCTGAGTAGCTCTGGCGGCACGTTTACATTTACCCATC
CTCCTTTCCTGGCCTCAACCCCTGAAAAGGTAGAGGAGGGAAGAGGCACG
GCAGAAGGAGAAGGAGGAGGAGGAGGGGAAGGAGGAGGAGAGGGAGAAGG
AGGAGGGGAGAGGCAGCCTTTCATCGTGCTCATTGAACGAAATTTGGAGC
AAGCTGATGGGCCTGCTTCTCAGCCTTCCCCCCCCCGTCCTTCTCCAGCC
CCATCTCGGCTGGCGATGGCAGCAGCAGCAGCACCAGCACCAGCAGCACC
GATACGCCGCCCAAGACGAGAAGAAAGATGCTCACTGTAGGAGGAGTGGA
AGGAGGGAGGGAAAGAGGGATTGAAGTAGCAACGGCGACGCAGGTTGCTA
AGATAGCTGCAACCGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAA
GGAGGAGAAGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGGAGGAGG
AGGAGGAGCTGGAGGAGGAGAAGCAGGAGCTGGTTGTACGTTTGAGGAAA
AATTGAGGAAGGTAGAGAAAGCGGGTGCGGCGGCCTTCTTGATATTCGAT
GCCCAAGAAGGACCTTTGATTCAGACGCGAAGTAAGAGGAAAGGAGGGAG
GGGGGAAGGGAGGGAAGGAGGCGCCGACGGAGGAGAAGCAGTGGTCAGCA
TTCCCGCGgtacgtgaaaatgggaaggagggaggaagagagggagggagg
aaagaagaggggggcgaaggcttatattagtgcgccccataaacgtctac
ttcgccttatgaaggttttgccgtatttcacttctcccccctccctccct
ccctccctccctcccttcctccctccctccctccctccctccctcccttt
ctcttccccagGTCATGATCAGCCACCAAGCCGGCCTCTACCTCCTCCAG
CTCCTCCCTTCCACTCCCTCTCCCCCTTCCTCCCCCCTTGACATCCACGT
TGTCATCGACGACAAGGAGCCATTTCCCATCCTGTTGTCTACGCCTAACC
TGGGCTTGCTCTCCCTCCTCCTTGCTGTCATTGTCCTCCTCGTCCTCGGG
GCCGCCGTCCTCTTCCTCCCCCCCGCCCTAGTCCAACGGCTCATGCGAGA
ACGATTGGAGAGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GGGAGGGGGTCATGCCGCTGTCGGATGTGCTGGCCTTGCCCACTGTGTGT
GTGAAGAGGAGTTGGGGGAGCCCTTCCTCCCTCGCGCCCTCCCTCGACGC
CTCGTCCTCATCCACGGCAACAGTCGACGAGGAGGAGGAAGAGGCGGAGG
AAGGGGGGGAGGGGAAGGGGGGAGGGAAAGAGGAGGAGGAGGAACGATGC
TCCATCTGCTTGGAGGCGTTCGTGGAGGGCGAGACTTTGAAAGCCCTTCC
GTGCCGCCACGCTTTCCATTCCGGgtgagaaggagggagggagggaggga
gggagggagggagggagggagggaggaaaggaaggtgggcggcacaatgc
atcccctcagctaatgcaacctcccctttctcctgtcattgtattggact
atgtacactcatccctccctccctccctccctccctccccagCTGCATCA
CTCCGTGGCTCACAGAGCGCGTACGAACATGTCCCCTCTGCAAAATGCTT
GTTACCTCCTCCTTGTCCTCGTCCTCCATCAACTCCTCCTCCTCTTCCCT
TCTATCCTCCGTTCCTCTCTCCTCTTTCTCATCTTCCTCTTCGTCCTTCT
GTCCCTCCGGCCCTGCCTCCTCCGCTTCCTCGTCCTCGCTACCCCCCTCC
CTTCTTCCTAGCTCCTCCTCCACCTCCTATCCCTCCACCACCGCCTCCTC
TTCCTCCCCTTCCTTCTTGTCCCCTCTCCCTCCTCCTCAACCCCTGTCTT
CCGGAGAGGCCGCGAGTATCGACCTGTAAGGAAAGTCGCTTGGACGCTTG
AAGGAGGGAGAGGGGGAGGGAGGGAGGACTCGCAGAGGTCTACGGGGAGG
ATTCTTGACCAGGGAGGTAGGAGAGACGGTGAGACAGTGAAGACAAATAA
TGCATTGTAGCCACAAATAGGATTGATAAACAACCAAAGGGGTGATGAAT
AAGCCTGAAAGTGAATAGTAGTATATATATATATATATATATATATATAT
GTCAAATATATCAATAATCGAGGGGGCATGAGTAAGATCGTGCATCCAAA
GAAATCAATCACGAAGAACGAAGCTGACGAGTGACTGGTATGTAACAAGA
TGGAAGGACGCAAGGAAGGAAGGAAATCTTTCATTTTTTATTTTTTTTCC
GTTTAGCGCCAGAAGAGGGAGGAAGGAGCAGGACGGAGGGAGGAGAAGAA
CATGCGCGGACCTCCCCTACCCCCTTTCTGC
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protein sequence of NO15G00460.1

>NO15G00460.1-protein ID=NO15G00460.1-protein|Name=NO15G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MLTVGGVEGGRERGIEVATATQVAKIAATDGGGGGGGGGGEGGEGGGGGG
AAAAAGGGGGAGGGEAGAGCTFEEKLRKVEKAGAAAFLIFDAQEGPLIQT
RSKRKGGRGEGREGGADGGEAVVSIPAVMISHQAGLYLLQLLPSTPSPPS
SPLDIHVVIDDKEPFPILLSTPNLGLLSLLLAVIVLLVLGAAVLFLPPAL
VQRLMRERLERRGREGGREGGREGEGVMPLSDVLALPTVCVKRSWGSPSS
LAPSLDASSSSTATVDEEEEEAEEGGEGKGGGKEEEEERCSICLEAFVEG
ETLKALPCRHAFHSGCITPWLTERVRTCPLCKMLVTSSLSSSSINSSSSS
LLSSVPLSSFSSSSSSFCPSGPASSASSSSLPPSLLPSSSSTSYPSTTAS
SSSPSFLSPLPPPQPLSSGEAASIDL*
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Synonyms
Publications