NO15G00370, NO15G00370 (gene) Nannochloropsis oceanica

Overview
NameNO15G00370
Unique NameNO15G00370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1677
Alignment locationchr15:123605..125281 -

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Properties
Property NameValue
DescriptionNuclear nucleic acid-binding protein c1d-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:123605..125281 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011082Exosome-assoc_fac/DNA_repair
IPR007146Sas10/Utp3/C1D
Homology
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_005854091.1 (nuclear nucleic acid-binding protein c1d-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU22268.1 nuclear nucleic acid-binding protein c1d-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 2.500e-24
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQIIKAAPARP 111
            + NF VAL SI++QLEPL A+PW  V+ SLK+EERAKLC+A+AY  HSLYYM LRT+GQPTK HRV+ ELERVK YM+RLQ    A ARP
Sbjct:    1 MDNFNVALTSISEQLEPLFALPWAVVLESLKEEERAKLCLAMAYAVHSLYYMLLRTRGQPTKTHRVRVELERVKTYMSRLQ----AAARP 86
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_002771541.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER03357.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-9
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQ 102
            L NFE  L+S+   L+PL+   ++ +++ +   E+++L ++LA+T+ SLY+MFL+T+G   K H+++ E+ERVK YM RL+
Sbjct:   18 LDNFEAQLSSLEDHLKPLMDTDYEELMSKMTPLEQSELNVSLAFTTASLYWMFLKTQGTDVKTHKIKDEIERVKSYMARLK 98
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_002775460.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER07276.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-9
Identity = 33/81 (40.74%), Postives = 58/81 (71.60%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQ 102
            L NFE  L+S+   L+PL+   ++ +++ +   E+++L ++LA+T+ SLY+MFL+T+G   K H+++ E+ERVK YM RL+
Sbjct:   18 LDNFEAQLSSLEDHLKPLMDTDYEELMSKMTPLEQSELNVSLAFTTASLYWMFLKTQGTDVKTHKIKDEIERVKSYMARLK 98
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_002786807.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER18603.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 71.2 bits (173), Expect = 3.900e-9
Identity = 31/81 (38.27%), Postives = 58/81 (71.60%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQ 102
            L NFE  L+S+   L+PL+   ++ +++ +   E+++L ++LA+T+ SLY+MFL+T+G   K H+++ E++RVK YM R++
Sbjct:   18 LDNFEAQLSSLEDHLKPLMDTDYEELMSKMTPLEQSELNVSLAFTTASLYWMFLKTQGTDVKTHKIKDEIDRVKSYMARIK 98
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_005836383.1 (hypothetical protein GUITHDRAFT_67864 [Guillardia theta CCMP2712] >EKX49403.1 hypothetical protein GUITHDRAFT_67864 [Guillardia theta CCMP2712])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRT-KGQPTKNHRVQAELERVKKYMTRLQIIKAA 107
            L   + AL ++   LEP+LA PW T+   L+  +RAKL + +AYT  SL++++L+T +G  T+ H+V  EL RVK YM++L+   AA
Sbjct:   14 LDKIDSALDNLETALEPILATPWDTLNACLEPVQRAKLNLMIAYTIDSLFFLYLKTQQGIATEEHQVNEELARVKSYMSKLKDATAA 100
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_013762493.1 (hypothetical protein AMSG_00767 [Thecamonas trahens ATCC 50062] >KNC50606.1 hypothetical protein AMSG_00767 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-7
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = 0 
Query:   17 STTVLHNFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQI 103
            ++  L   + ALA +   ++PLL  P + V+ +L + ++AKL +ALAY+ +SL++++L+T+GQ    H V  EL RVK Y+ +L++
Sbjct:    7 ASRALDEVDAALAQVEATMQPLLEKPLEEVMENLDNADKAKLNVALAYSLNSLFHIYLKTQGQDPSAHPVADELARVKSYVHKLEV 92
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_005766385.1 (hypothetical protein EMIHUDRAFT_246548 [Emiliania huxleyi CCMP1516] >XP_005785916.1 hypothetical protein EMIHUDRAFT_229615 [Emiliania huxleyi CCMP1516] >EOD13956.1 hypothetical protein EMIHUDRAFT_246548 [Emiliania huxleyi CCMP1516] >EOD33487.1 hypothetical protein EMIHUDRAFT_229615 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.5 bits (158), Expect = 2.100e-7
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:   23 NFEVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQ 102
            NFE  L  I +++  L   PW  +   L   E A+L + +AYT ++L+YM+L+T+G P+ NH V AELER+K Y+ +++
Sbjct:   25 NFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVR 103
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: EPB87885.1 (hypothetical protein HMPREF1544_05292 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-7
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:   25 EVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQIIKAAPARPS 112
            +V L  + K LEPLL+ P   V + L  ++R +L + L+Y+ +SLYY++LRT+G   + H V  EL RV+KY+ +L+  +   A+P+
Sbjct:   19 KVRLQVVKKHLEPLLSKPINDVFSKLPVDQRYELEVLLSYSLNSLYYIYLRTQGSDPQKHEVVNELLRVQKYIQKLKKAQGKEAKPT 105
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: GAN00885.1 (nuclear nucleic acid-binding protein C1D-like [Mucor ambiguus])

HSP 1 Score: 65.1 bits (157), Expect = 2.800e-7
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:   25 EVALASITKQLEPLLAVPWQTVVTSLKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQIIKAAPARPS 112
            +V L  + K LEPLL+ P   V + L  ++R +L + L+Y+ +SLYY++LRT+G   + H V  EL RV+KY+ +L+  +   A+P+
Sbjct:   19 KVRLQVVKKHLEPLLSKPINDVFSKLPVDQRYELEVLLSYSLNSLYYIYLRTQGSDPQKHEVVNELLRVQKYIQKLKKAQGKEAKPT 105
[Close]
BLAST of NO15G00370 vs. NCBI_GenBank
Match: XP_002787803.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EER19599.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-7
Identity = 32/91 (35.16%), Postives = 59/91 (64.84%), Query Frame = 0 
Query:   21 LHNFEVALASITKQLEPLLAVPWQTVVTS----------LKDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRLQ 102
            L NFE  L+S+ + L+PL+   ++ +++           L   E+++L ++LA+T+ SLY+MFL+T+G   K H+++ E++RVK YM R++
Sbjct:   18 LDNFEAQLSSLEEHLKPLMDTDYEELMSKMTQLYQVLLILSALEQSELNVSLAFTTASLYWMFLKTQGTDVKTHKIKDEIDRVKSYMARIK 108
The following BLAST results are available for this feature:
BLAST of NO15G00370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
XP_005854091.12.500e-2467.78nuclear nucleic acid-binding protein c1d-like prot... [more]
XP_002771541.11.000e-940.74conserved hypothetical protein [Perkinsus marinus ... [more]
XP_002775460.11.000e-940.74conserved hypothetical protein [Perkinsus marinus ... [more]
XP_002786807.13.900e-938.27conserved hypothetical protein [Perkinsus marinus ... [more]
XP_005836383.11.100e-842.53hypothetical protein GUITHDRAFT_67864 [Guillardia ... [more]
XP_013762493.11.200e-737.21hypothetical protein AMSG_00767 [Thecamonas trahen... [more]
XP_005766385.12.100e-740.51hypothetical protein EMIHUDRAFT_246548 [Emiliania ... [more]
EPB87885.12.800e-739.08hypothetical protein HMPREF1544_05292 [Mucor circi... [more]
GAN00885.12.800e-739.08nuclear nucleic acid-binding protein C1D-like [Muc... [more]
XP_002787803.13.600e-735.16conserved hypothetical protein [Perkinsus marinus ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001577NSK001577Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00370.1NO15G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670387gene_4588Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00370.1NO15G00370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00370 ID=NO15G00370|Name=NO15G00370|organism=Nannochloropsis oceanica|type=gene|length=1677bp
GGCACGGTATGGCCTACCCATGCCCCCATCTATCTATTATCTATCATCTC
CGAGCCACACTTACACTTTCCATGCAACTACGAAACACGTGAGAAAGACT
GCGCATAATATTAATGGCTTCTTCTTCCGCTGCTCCTCCGCCGGTTGACG
ATAAGAACAAGAGCACTACTGTCCTCCACAACTTTGAGGTGGCCCTTGCT
AGCATTACCAAGCAGCTCGAGCCGCTTCTTGCTGTGCCTTGGCAGACAGT
GGTGACAAGgtagggagacccacactcacccacctacagaaaatagggat
aatagggaataggagagagatatagcggccctcctcccatttgaggcgtg
ttttaatttaaggcttaaaggggttggaacctcccctcccttcctccctc
ccctccctcccctccctcccctccctccccatacatgcactcaccacgaa
ccccttccatccctacccttccttccttatgtagCCTTAAGGATGAAGAA
CGTGCCAAGCTCTGCATCGCCCTGGCCTACACCTCCCATTCTCTTTATTA
TATGTTCTTACGAACGAAGgtatgtgcgggagggaagggagaaaggagga
gggtgaggaggccaggatcggtctggaaggggaacatgatatgagggtgc
gatgacagattcaacttggcttaccttcaagaattcaaggtggcaggttt
gagaggttgttatcatcatatatttcgttcctcccatccttcccactgag
gatccgtatccatcctccctccctacttgcctccctgcctccaacccacc
ttcccgcgctttctgcagGGCCAACCCACCAAGAATCATCGCGTACAAGC
GGAGCTTGAGCGAGTCAAGAAATACATGACTAGGTTACAGgtaggcagga
agggaaggaaggagggaggaagggagggagaaaggaaggaaggaagggag
ggaggaagggaggaagggagggagggagggagagttggtatgggatttgt
atttatctaagtttgacttacacatgacttatagacctatccctgttaat
tcatttttacctaactctcctccgtctttccctcggtccctcccttcttc
cttaccgccagATCATCAAGGCAGCCCCCGCGCGTCCCTCCCTCGAGCCC
TCCCTCCAGCCCTCCCTCCAGCCCTCCCTCAAGCTGAATGCCAAAGCCTC
GGCACGCTTCATTACCGCAGCATTACGGAAAGAAGGGCAGGGCAAGAAGG
AGGGAGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGGGAAGAAGGGAAGCCCTATGGCAAATGGAGA
AGAAGAAAAGACGAGTAGTAGAAAGAGACAACGACAGTGAAGAGGGAAAC
GAAAAGTGTACATAGACAGTGGGAGGGATGGAGGGAGGGAGGGAAGAGGG
ACGGCAAGGAAAATTCATGCAAAGAATGAATTAATTATTGTGCCGTCAGT
TCAGACATCGTCTGAGGGTGGACTTGAACTATCTCCTTCTTTCCTTTGTG
GCACTTCACAGCGTTGTGGAAATAAAGGGGAGGGAGGGAGGGAAGGAGGG
AAGGAGGGAGGGAAATGAGGAGCAGCAACAGCAGAAACAAGTGTTTTTAT
CGATAGGATATTTCGGTCGCTTATTTC
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protein sequence of NO15G00370.1

>NO15G00370.1-protein ID=NO15G00370.1-protein|Name=NO15G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MASSSAAPPPVDDKNKSTTVLHNFEVALASITKQLEPLLAVPWQTVVTSL
KDEERAKLCIALAYTSHSLYYMFLRTKGQPTKNHRVQAELERVKKYMTRL
QIIKAAPARPSLEPSLQPSLQPSLKLNAKASARFITAALRKEGQGKKEGA
REEEEEEEEEEEEEEEEEEEGKKGSPMANGEEEKTSSRKRQRQ*
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Synonyms
Publications