NO15G00220, NO15G00220 (gene) Nannochloropsis oceanica

Overview
NameNO15G00220
Unique NameNO15G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3394
Alignment locationchr15:57310..60703 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:57310..60703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G00220 vs. NCBI_GenBank
Match: XP_005855467.1 (hypothetical protein NGA_0139700 [Nannochloropsis gaditana CCMP526] >EKU20896.1 hypothetical protein NGA_0139700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 118.6 bits (296), Expect = 9.900e-23
Identity = 80/178 (44.94%), Postives = 100/178 (56.18%), Query Frame = 0 
Query:    1 MHDDNGVNMEVTSLQEQNPPSSSSTPPSPLGLQGPALLSSFHATYRSLFHHLPASLRPPGIQFLEDAEYPPKPSSSSFRRGSGGRGVGGSSPSLPSSLPPLTTLRWASRRMRRAIRLCLARVAQDEEEGGVEGVLAPLTPEEQESLGFLDFTERAWALMELAYFSNDGQGMGGWEVVA 179
            M+DD  + +      E   P+S S   S L  +G  LLSS +ATYR+LF HLP S+RP GI +LE  E    PS    R G   R      P+LPS    L+ LRWASRR+RR+IR CLA V    +       +A LT +E+E LG L F ERAWALMEL   + DG+G    E+VA
Sbjct:    1 MYDDAEMQVAPPDETEDTFPTSRS---SLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRER-----CPALPS----LSILRWASRRLRRSIRRCLAHVDDVIDREARGDAVAALTAQEEEGLGILQFMERAWALMELVLLTEDGEG----EIVA 162
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BLAST of NO15G00220 vs. NCBI_GenBank
Match: EWM20812.1 (hypothetical protein Naga_101750g1 [Nannochloropsis gaditana])

HSP 1 Score: 79.7 bits (195), Expect = 5.100e-11
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = 0 
Query:    1 MHDDNGVNMEVTSLQEQNPPSSSSTPPSPLGLQGPALLSSFHATYRSLFHHLPASLRPPGIQFLEDAEYPPKPSSSSFRRGSGGRGVGGSSPSLPSSLPPLTTLRWASRRMRRAIRLCLARV 123
            M+DD  + +      E   P+S S   S L  +G  LLSS +ATYR+LF HLP S+RP GI +LE  E    PS    R G   R      P+LPS    L+ LRWASRR+RR+IR CLA V
Sbjct:    1 MYDDAEMQVAPPDETEDTFPTSRS---SLLAAEGQYLLSSLYATYRALFRHLPVSVRPAGIDYLERVEGVSSPSLPLSRSGHRER-----CPALPS----LSILRWASRRLRRSIRRCLAHV 110
The following BLAST results are available for this feature:
BLAST of NO15G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855467.19.900e-2344.94hypothetical protein NGA_0139700 [Nannochloropsis ... [more]
EWM20812.15.100e-1145.90hypothetical protein Naga_101750g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR095ngnoR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00220.1NO15G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629840gene_4575Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101750g1gene9600Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00220.1NO15G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00220 ID=NO15G00220|Name=NO15G00220|organism=Nannochloropsis oceanica|type=gene|length=3394bp
ACAGGACAATGCATGACGACAACGGCGTTAACATGGAAGTTACCTCCCTC
CAGGAGCAAAACCCTCCTTCGTCTTCGTCTACCCCTCCATCGCCCCTCGG
CCTACAGGGCCCGGCGCTTTTATCCTCCTTCCACGCCACCTACCGCTCCC
TCTTCCACCACCTTCCTGCCTCCCTCCGTCCGCCCGGGATTCAATTCCTC
GAAGATGCAGAGTATCCACCCAAGCCCTCCTCATCCTCCTTCCGTCGTGG
CAGCGGTGGCCGTGGGGTTGGTGGCTCCTCCCCCTCCCTCCCTTCCTCCC
TCCCACCCCTAACCACTCTCCGATGGGCCTCGCGTCGCATGCGCCGAGCC
ATCCGGCTCTGCCTCGCCCGCGTCGCCCAGGACGAGGAGGAGGGAGGGGT
GGAGGGAGTGCTGGCACCTTTGACCCCAGAGgtgcgtgttgcggtggtgg
cagtgacacgctctattccgtcgccttctatttggtttttgcccctctcc
tctcgctttcaccctcttcattcgtccgtttctacctttctccaaggaca
tgaatgacccgactttatttggaacgccaggacgcgggtggagccggtgt
tgttcagtcacggcggacaaaggcctgcaatacttactcttccctccctc
cctccctccctccctccctccctttctttctttgtctagGAGCAAGAATC
CCTCGGCTTCTTGGACTTCACCGAGAGGGCCTGGGCACTGATGGAGCTGG
CGTACTTTTCTAATGACGGGCAGGGCATGGGCGGCTGGGAGGTGGTGGCG
TGGGCTCAGCCCTACTGGGGAGGAGGGGGGGACTGGAGGGAGGGAGGGAG
GGATGGCGGGCCGGAGGCGCCGTGGAGGAGGGCGTGGGAGTTGGTGCTGA
TGGGGGAGATGGAAGAGGCAGCCAGCGTGCTGGACGGGGTGGGAGTGTGG
GAGGAAGGGAGGGCGGGGGGGAGGGATTGGTTCTGGCCGAGTTGGGATTT
GAAGGAGAGGTTACTAGGGTTGTTACTAAGCTGCCCGTTGGTGAGGGCCA
TGGCGGTACTGAGGGAGGAGGAGGCAGTGGAGGAGGAAGCGGAGGAGGAG
ATGGCAAGGAGAGCGGCAGCACGGGGGAGGGTGGGGGTGGATTTGgtgag
tggaggggagggaaggagggagggagggagggagggagcgaatgagggag
ggagggagggagaagtagtattcacgagggaagcgccttggaaagagcgg
agactcacagtctcacatcgcctccctccctccctttctccctccctcag
CCCCTCCCCTCCGATAGCGGCTTCGAGGCGACCCGACAGGACGTGGCTCG
CTCCCTGGCCCGCGAGGGCGAACGCTGGCGGCGAGACATTCTGCGGGAAC
TAACCTCCCTCCCTCTCCTCCCTTCCTCCTCCTCTTCTTCCTCCTCCTCC
TCACGAACCCGATCCTCCGCGGCCTCTTCATCCTCCCCCTCGACTTTGAT
GGGTGTGAGACGGTTGTTGGAAATGTTGGCGGGGAGGGAGGGAGCGGCGG
AACGGACTGTCCGGGCCTTGGAAGGAGGGAGGGAGGGAGGGAGATCACGG
GGGAGGAAGGGGTGGAGGCTGCGATTCGCGGGTAAAGTCTTGTTTGAAAA
TCCGGGTTTGAAAGGGCGGGAAGTAGCCCTGGCCTTGGAGGAGGCGAGGA
GGGAGGGAGGGAGGGAGGGAGGGGGGCAGGCGGGGAGCAGgtgcccgcgg
acgacgacagttgtgatgcgatcttgaaagctgtgttggggagggatgtg
ggccccctgctcgtcgctttgagcagCAGAAGCAGCAGCAGCAGCAGCAG
CAGCAGTACGACAAACACCTCAAGCAGTGGCGACACCCCCGCCCCTCCCC
CCAATCTCCCGCTGGCTGCTCTCTACCACCTCGTCCTCCTCCTCGACCTC
ACCTCCTCCGTCACTCCCTCCCTACGCTCCCTGCGCACCCCCGCCCTAGC
TGCCAAGCGCTCCTCCCTCCTTGCCTCCTTCCTTTCCTCCTCCCTCCTCC
CCCATCGCTGGTGGCGACCCGCCCTGAGCTACGCGCTGGGCAGTGCGGAA
ACCGAGGAGGAAGTTGGGGAGGGAAAGGGGGAGGGCTTGAAGCAGGCGGC
AGAGGTGCTGAGGCTCCTCGGCCCATTCCTGGCAGACGAGTCTGCGGAGA
CGAGGAGGTGGTTGGCGACGGTGGGAATGGCAGGGAGGGAGGGAGGGAGG
GAGGGGCCGCTGGTGGTGGCGTGGATGGAGGCGAGCGTGGTCGGAGGTGA
CTATGCGTGGAGGCGGTACGAGGAGGGAGTGAAGGAGGGAGGGAGGGAGG
GGGGCTTCGAAAGGGCATTGGAGGCAGTGCGCGTGGCGGTACGGCTGTGG
AGTGGCAGCGATTGGGGGCGGAGGGAGCTTCGGGACCGACTGGAGGGACT
GTCCGAGTCATTTCTAGGACTTATGGCCCGACTAGTGGATGTGCTGGAGG
CCCCCTTGGCCCATATCTCCGTCCCTCCTTCTTCCTCGTCCTCCTTTTCC
TTGGGAGAGATGGAACGCATCGCAGGGGCGATCGTGGAGGCGGTGGCGGT
GGAGGAGGCAGAGAAGGGGGGGAGGAAGGGAGGGAGGGAGGGGGCGGCAG
TCTTCCCCGTGGCCTCGGCCTTAGTCACGACCCAGTGCCCGGAGCTTTCT
GTGTTGTACGGATGCCGCCTATCCCTGTCCCGGCTCGCGGGGAAGGGAGG
GAGGGAGGGAGGGAGGGAGGAAGAGAACGACCTGACCGCTGCCCTCGGCC
CTCTCCTTGCCACTCTTCCCCCCCTGGGCGGCGTGTGCCCGAAGCGTCTC
TGGCCTTGTGTCCTGCACGCCTGTCTGTCCCTGCTGCAAACCATCATACG
GGATGAGGAGATGTACCCCTCCCCCTCCCTCCCTCCCTCCCCCCTGACTC
CCGAGCAGGCCGGGGCGCTGCTGACGTGTTTGGCGGAGGAGCAGGTGTCG
CCGCGGCGGGGAGAGTTTTTGGGGAGGGAGGGAGGGAGGGAGGGGTGGAG
TCAAGCGAGGAGGCAGACATTAGCAATGGTGATGGGGAAGGCGTTCGTGG
AGGAAAGGAAGCTCAAGGCCGCGTGGGCTACGGCGAGGGCGAGGGGAGGG
AGCACGGGAGGAGGAGGGGGAGGAGGAGCAGTGGGAGGGGGAGGGGGAGT
GGGTGGAAGGGAGCCGGTGATTGATTTGTTAGGGCCGCCCATGCTGTAGG
AGGGAGGGAGGGAGAGAAGGAAGAGAGGAAGTCGAAGGGGAATGACAAGA
GATATTGAAGAATAAAGTAAGCTGATGAAATGTGAGGGCGAGCGATTCCA
TTCCTTTTTTGGGTGGTACCTGGAAAGCGTGGCTGTCTTTTTTT
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protein sequence of NO15G00220.1

>NO15G00220.1-protein ID=NO15G00220.1-protein|Name=NO15G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=914bp
MHDDNGVNMEVTSLQEQNPPSSSSTPPSPLGLQGPALLSSFHATYRSLFH
HLPASLRPPGIQFLEDAEYPPKPSSSSFRRGSGGRGVGGSSPSLPSSLPP
LTTLRWASRRMRRAIRLCLARVAQDEEEGGVEGVLAPLTPEEQESLGFLD
FTERAWALMELAYFSNDGQGMGGWEVVAWAQPYWGGGGDWREGGRDGGPE
APWRRAWELVLMGEMEEAASVLDGVGVWEEGRAGGRDWFWPSWDLKERLL
GLLLSCPLVRAMAVLREEEAVEEEAEEEMARRAAARGRVGVDLPLPSDSG
FEATRQDVARSLAREGERWRRDILRELTSLPLLPSSSSSSSSSSRTRSSA
ASSSSPSTLMGVRRLLEMLAGREGAAERTVRALEGGREGGRSRGRKGWRL
RFAGKVLFENPGLKGREVALALEEARREGGREGGGQAGSSRSSSSSSSSS
TTNTSSSGDTPAPPPNLPLAALYHLVLLLDLTSSVTPSLRSLRTPALAAK
RSSLLASFLSSSLLPHRWWRPALSYALGSAETEEEVGEGKGEGLKQAAEV
LRLLGPFLADESAETRRWLATVGMAGREGGREGPLVVAWMEASVVGGDYA
WRRYEEGVKEGGREGGFERALEAVRVAVRLWSGSDWGRRELRDRLEGLSE
SFLGLMARLVDVLEAPLAHISVPPSSSSSFSLGEMERIAGAIVEAVAVEE
AEKGGRKGGREGAAVFPVASALVTTQCPELSVLYGCRLSLSRLAGKGGRE
GGREEENDLTAALGPLLATLPPLGGVCPKRLWPCVLHACLSLLQTIIRDE
EMYPSPSLPPSPLTPEQAGALLTCLAEEQVSPRRGEFLGREGGREGWSQA
RRQTLAMVMGKAFVEERKLKAAWATARARGGSTGGGGGGGAVGGGGGVGG
REPVIDLLGPPML*
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Synonyms
Publications