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Properties
| Property Name | Value |
|---|
| Description | Tbc2 translation factor, chloroplastic |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr15 | genome | chr15:39005..46198 - |
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO15G00170 vs. NCBI_GenBank
Match: EWM22830.1 (RAP domain protein [Nannochloropsis gaditana]) HSP 1 Score: 70.1 bits (170), Expect = 5.200e-8 Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 0
Query: 888 STNLMCEFDDQGIFRFDFLLLPPSRSS-----SLIPLLPVVIEVDGPLHFRLNDIRRPMGDTAFKRRLIRAQT-QKYAGLVPIPWFEW-----RQATSPLTSKMKEGG 985
S+ L E DD G++ D +L+P + SL P LPV++EVDGP HF N RR GD K R++ AQT +K G+V + W+EW RQ T + K+ E G
Sbjct: 102 SSLLHMEVDD-GVYVQDIVLMPKAAGGLGAKHSLPPPLPVIVEVDGPPHFFNNVPRRSRGDHKLKARILEAQTGKKNGGVVSVTWWEWVCRTRRQRTRMMVRKLVEVG 208
BLAST of NO15G00170 vs. NCBI_GenBank
Match: EWM20815.1 (hypothetical protein Naga_100921g1 [Nannochloropsis gaditana]) HSP 1 Score: 68.6 bits (166), Expect = 1.500e-7 Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0
Query: 155 LGGRAIAALLHQHEGDVDGLLKVIETHVSVFEKQNCAMAFNR 197
+G RAI ALLH+H+GDV LL VIETHV FEKQNCAMAFNR
Sbjct: 150 VGSRAITALLHKHDGDVGALLDVIETHVGGFEKQNCAMAFNR 191
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO15G00170 ID=NO15G00170|Name=NO15G00170|organism=Nannochloropsis oceanica|type=gene|length=7194bp
ATGGAGACAAGGCGGCGGAGACGACGGTGGAGAAAGCCTTCGCATTGTAG
TGCTGGGCTTGTGCTTTTGCTACTATTGCGGATAGgtaaagcttatccct
ccccccacgtaccctctcctcctctccttcctccctccctcccatgtcgc
acccgctttttctgcataaagtccactaaacaaatgtgccttgccttctc
taccttctgcagGTGCCGTGGATACCCTTTCCTTTCTCTCGTCTTCATTG
TCATCCTTCTCTTGGAGAAGAAGAAGAAGGGAGGGACATCCCGAGCTCGC
CTCCTCCACTACCCCCTCGTCCTCCTCTCCCTCCTCCTCCTTTCCAAAAG
CCCCGTCAGAAGCTAAAAACAGCAAGGCACCACAGCCAATACCACCACCA
CCATTGAGAACCTTTCCACACGCCAAGAGAAAAGAACAGCGGATGCTAAA
CGAAGGAGATGAGGGGAAGGGGAAAAGGAGAGGTGGCAGGGGTGATAGCA
GCGGTAGCACCAGTCCGTTATCACCGATAACACCCATACGAATAGGTGAA
GGAGGAAGAGGAGGAGGGGGAGAAGGAGGAAAGAAGGCATTGGGCGGGCG
GGCGATCGCTGCCCTTCTCCACCAGCATGAGGGCGACGTGGACGGCCTGC
TCAAGGTGATCGAGACGCACGTGTCGGTCTTCGAGAAGCAGAATTGTGCC
ATGGCCTTCAATCGgtgaggagggataaaattataaaaaaaagggggggg
agtgaagtggcagcgcgagcctcgcgtggattctccttctgaatattccc
tccctccctcccttcctccctccctccctcagGCTCAGTAAGGCTGCTCA
TGCCGCTCACCAGCTGCAATCCACCGCACGCCATCCCGCCACTGCCCGTC
TCATCCAGCGGGCCGCCACCTTACTGCATACTTTTAATGCCATCGAGCTC
GCCAACACCATCAATGGACTAAGCAAGCTTGGTGCACACCCAGGACCGGC
CTTTGTGGAGgtaaagcaggagggagggagggagggagggagggagggga
tagccacttatactcttgtcccttcgtcacgacactcacctcacccgggc
taccctctcaatccacacccacctcctcaatacacctccacctcctcgat
gcccatccgcattcactttctcgatcctcactcacctctttaatcagcat
ctattgcctcaatcaacagtcacatcctaaatccatatccacctcctcaa
tccacataacaccctacagGCCTTTACCGAGGCTGTTTCAGCGGCGCTCT
GGACCTTCAACGCACAGgtatgtgccctccctccctccctccctccctcc
ttccctccctctctccctccctccctccctccctctttccttgcggctct
gctcctgccgatagatattccctcacacgatcctccctcccttccccctt
cccttcctcccttcctcagGAGCTCTCCAATCTCCTCAACGGGCTCGCTG
GCCTTCAAATCCGTCCGACCGACGATTTCTTTTCCCGCGTAGTCTGTGAA
GCCGAAGCCAAGCTGCCGGAATTTAATCCTCAGgcaaggcctccctccct
ccctccctccctccctccctcttcttctccctcctggtctaccctccacc
aacagtctttcgtcttctctcccttatgaccccctccctccctccctccc
tccctccctcacgtccagGAGCTGGCCATATTCCTCAACGCCGCGGGAAG
GCTCGTGCATCTTTCACCCTCTTCAGGCCGAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGAGTTAGAGGAAGCTATAACCCACCGAGG
ATCTTCATGGAGAAGGCACGGCTGCTATTCCAGGCCAAGgtagggaggga
ggaagggagggaaggagggagggaaggggggggaagacaagggagtcctc
cggtgactctgtccaatatttacctcctccctctctccctccctccctcc
ctccctccctccatccctccctccctcttcctccagGTGAATGCCTACAG
CCCACAGAATCTGGTGAACGTCATCGCCTCCTTTCCTAAGCTGGCCTACG
TCCCTCCTCCCTCCTTCTGGGAGGAGGGAGGGAGGGATGGAGGGAGGGAT
GGAGGGAGGGAAGGAGGGAGGGAAGGAGGGGGGGTGTTGGGAGCGATTGA
GAGGGCGCTACCGGCCTTCAAGCCTCAGgcatgaaacgagaggagggagg
gagggagggagggagggagggagggattattccgctcatactttttcaaa
gagagcattctcctgttctcatgtactccctccctgcctccctccctccc
tccctccctccctccctcccttcctccctccctccctcgttcaccagGAG
CTCTCTATCCTAATCAACGCCCTGGCCAAGCTGGATCACGATCCTGGGCC
TGCCTTTATTAGAGCCCTCGGTGACGCAGCAGCACACAAGCTGAATATAT
TTTCGCCTCAGgtaagtaatgggggaaagagagagggagagagggaggga
gggagggaggggtcttcgctgaatgcgtacactgacaccccgtcctcccc
cccgccctccctcccgccctcccccagGACTTGAGCGTCGCTCTCCTCTC
TCTCGCGCGCCTCGGACGGGATCCAGGTCCGTCCTTCCTCTCCACCGTGG
TGGATGCCGCCGAGAGGGTGTTGCCTAGGTGCAATGCACATgtacgtccc
tccccccctcccttcctccctctttcccttcttccccgtcagtacaggcg
tcttgcatgtccttgatgtttttcgtactttgccgcgtataccctccctc
cctccctccctccccccgtccctcccttccttcctgtcgtttgagcaacc
ctcgttcttgttctcgcattacactgtcttcattggcccttcgcaaacag
actcttctgattcctcctccctccctcattccctctgtccctccctcccc
acccagGACCTCTCCCTCCTCATCACTGGTATCGCTCGGTGGGAGCTGTG
CCCCTCTCCTTCCTTCCTGGCTTCCTTTTTGGCGCGAACCGTGGTGTGCT
TGAAGGACTTCAGGCCGCAGgtaagaagggagggagggagggaggaagga
agggagggagggagggaaggcgaaaggtttgaagcagctgtggcagcaga
tttcggtatttgtctcccttatcgttgcccacctttcctatcgtcttccc
tccctccctccctccctccctccctccctttcttcttctcgaacagGGCC
TCGGTCACACCCTCCGCTCCCTCGCCTCCCTCCTTCCCTCCCCTTCCTCC
CTCCCTCCTTCCTTCCTCCGCCCCTACCTTCAGCGTGTGGAGGAGACGCG
AGAGGAAATGTCGGCATCGGATGCAGTGCTGATTGCAGGAGgtgagggaa
ggaggcagggagggagggagggagggaaggagggagggagggaggcttgt
ccgaggcgatatgggaaagagagaagaaatgaaggtagagatggagaacg
gagaagagggagggagggagggagggagggagggagggagggaaggaaga
ccaactcacgttctcttctcttcccacgcctttccatagGCCTGGGCGGA
CTGGACGTCGACGCCCCTCCCCTCTTCACGAAAACCTTCCTCATGCTCCT
CCTCCGgtacgtccttccctccctccctccccccctccctccttccatcc
ctccacccaaccctggatctccccctcccttcctccctccctccctcccc
cccccctcccctccagCGAGGGTGCCACGGAGGCGCTGCATGCGAATGAG
CTTAGCGTCGTCCTCAATTACTTCTCCCGGACCGGCGCGATTCCCTCCAT
GCTGCTGACTCGTCTCTTGgtgaggagggagggagggagggggggaggga
gggggggagggaggggacggtgaaacgatggaccgtctcacttttctgcc
ccctccctccccccctccctctccagGCCGTGGCCTCGCAGCGTCTTCCC
CTCTTCGGCCCTCCTTCCCTAGCAAGCTCCGTTTTCTCCCTCTCCCGCCT
GCCTGCCTCCCCTCCTCCCATTTCCTTCCTCGACGCGCTCCGgtaggttc
agcaaggggagggagggagggagggagggaggggaggacgggaagggagg
gaggggaaagaaaggagataggctttcaccgcctgatataacatacttac
caccctccctccctccctccctccctccctccttcccagTGACCGCGCCC
AGCCCCTCCTCCCGGCCTTCAATGCCCAGGAGCTGGCCAACCTCCTACTG
GCTTTCGCGCGCCTCACCTACTACCCAGGCCCCTCCTTCCTAGACGCGGT
CGCAGGGCAGgtagggagagataaagggagggaggaaggaaggagggagg
gagggagggagggagggagggagggagggaagggtcactgtccgttcggt
tatttttttgacaatctatttctcacatgtcctacctatacctccctccc
ttcccttccctgcctccctcccttcctctgtccagGCCGTCGCCCTCCTC
CCTCGCTTTACGCCTCAGGGAATATGCAATGTCTGCAACGCCCTTGCCAA
ACTCTCTCACGACCCCGgtagggagggagggagggagggagggagggaag
ttttcagactcatccacacgcattcgccgcactgtgaaaaacaaggaggg
tgggaaaagaggaggggaggagagagagagggagcagcagggggtaatta
aattttatcttacacatgccgcaccgtctaatgtagGAGCTGCTTTCTGG
GATGGCTTGGACTCCCTCCTCTTCCCTCCCACGGCCTCTCCCTCTCTGAC
GCTCTTCGAGgtacgtcctccctcccgctcttcccccccccctccttctg
accaacctctccctccctccctccctccctccctccctccctccctcccc
ccttcttttcgcagACTGCTATCCTCCTCTGGTCCCTGGCCGTCCTTCCC
TCCCCCCTCACCTCCTCCCTCACCACCCACCTCCTCCGCCATGTCATAGA
CCTCCTTCCTCGGAAAAAATACAAAGgtttgccccttccctccctccctc
ccttcctccctccctccctccctccctccctctctctctctccccctccc
tccctccttctgattgactctttcgttcgccctccctccctccctccttc
tagTGCCCGAGGATATTCTCGTGCAGCTCCGGCAGACCTTGCTTCATCTC
GAGGGACAAAAGgtgtgtgtgtggaagaaagggggggggggacgagagag
agagcaaggagggagggagggagggagggagggaggaggggagggaggga
ggaaggaagagagggcttgaacagaaggatgactcgcctttacaccgaag
ggggggaagggggagggtaggagggcagaaggaaggtaaagactcacaca
cctctcaatgttgtatcacaatgaatataaactcataaacccctccacgt
atccctgtggatatagtcgtactcgggatcgagacagagactcacacgcc
cttccctgttataccacaatgaatatatacacatgcactttccgtgtatc
aatatgattaacagACCCGTCGGATTCCTGCTGCCGTAATCAAAAGCTAC
CGAGCTGCGCTTGCCCAAGCCAATGTAGAAGCAGCTTCAGTCAgtacgtt
cccttcctccctcctccttccctccctcccccacttccttcctcaagccc
tccctccctccctccctccctccctcccctctgcgtagGGAAATCGCGGT
CGCCCACCGTCTCGGCGTTGCAGGAGGAAGTGGGCCGCGCCCTCCAAAGG
CTGTTTGGGAGCACGAATCTCATgtgagaggggagggagggagggaggaa
gagagggagggcaggcgggaggcagcgaagagaaggggttagagaaggag
gaagggaggaagggagggggagaagcaaagccattatatctcgttcttcc
ttgatcgttcccaccccccgcagGTGCGAGTTCGACGACCAGGGAATCTT
CAGATTCGACTTTCTCCTACTCCCTCCATCCCGGTCTTCCTCCCTTATTC
gtgcgtactttctattcctcctctttttcgcctttccctccctctgtccc
tccctccctccctcgttcgcctcctacctgatacctgactgtatttcctt
tttctcgccctccttccctccctccctgcagCCCTCCTCCCCGTCGTCAT
CGAGGTCGACGGCCCCCTCCACTTCCGGTTGAATGACATTCGTCGTCCCA
TGGGAGACACGGCCTTCAAACGCCGCCTCATCAGGGCACAGgtatagcca
ttatttctttcctccctccctccctcgctcctttcttccccccctccttc
cctcccttccttatgccttcctttttcctctacccttttttttcccaaaa
atttaacacgtgattttcacccactccctccctccctccattcttccatc
cctcccttcctccctagACCCAAAAATACGCGGGGCTGGTGCCTATCCCT
TGGTTCGAGTGGCGGCAAGCCACTTCCCCCCTCACCTCCAAAATGAAGGA
GGGAGGGAAGGAGGGAGGGGTGGAGGCCTACCTGCGGGATGCATTCCGGT
TGGAGGGACTATCGTTGGAGGACTACCTGCCTTCCCCCACAGCGCCCTGT
CCTCCTCCTCCTGCTGCTGCTGCTGCTACTGCTGTTCCTACTGCACCTGC
TCCTGCTGTTGAAGGTGCCACCAGTACCACGAAAACAACAGTCAAAAGTC
GTCGGAAATCATCAACAAAGGCAGCGTCACTCACAGGGGAAACACCAGTA
GCAACAATAGCAGCAGGCACAGCAGCCGTTATGACAGGAGCAGGGGAAGA
AGTAATAGGAGAAGCAGCAGCAGAAGCTGTAGGAGCGACGACACGTAATA
GAAAGAAGAGAGGGAGGCCAGCCAAGAAGAGGGAAGAGCCAGAGAAGCGG
GAGGAAGAGAGAGAAGGAGGGATAGCAGCGGCGACTACTAAGGTGAAAGG
AAAGGTAAAACAGCCGGAAAAAGAGGAAGAGGGCCAGGAAGAGGAAGCAA
AAGTAATTCACAGGAGAGGGAAAGCAAGGAAAGAAAAAAAATGA back to topprotein sequence of NO15G00170.1 >NO15G00170.1-protein ID=NO15G00170.1-protein|Name=NO15G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1163bp
METRRRRRRWRKPSHCSAGLVLLLLLRIGAVDTLSFLSSSLSSFSWRRRR
REGHPELASSTTPSSSSPSSSFPKAPSEAKNSKAPQPIPPPPLRTFPHAK
RKEQRMLNEGDEGKGKRRGGRGDSSGSTSPLSPITPIRIGEGGRGGGGEG
GKKALGGRAIAALLHQHEGDVDGLLKVIETHVSVFEKQNCAMAFNRLSKA
AHAAHQLQSTARHPATARLIQRAATLLHTFNAIELANTINGLSKLGAHPG
PAFVEAFTEAVSAALWTFNAQELSNLLNGLAGLQIRPTDDFFSRVVCEAE
AKLPEFNPQELAIFLNAAGRLVHLSPSSGRGGREGGREGGREGGVRGSYN
PPRIFMEKARLLFQAKVNAYSPQNLVNVIASFPKLAYVPPPSFWEEGGRD
GGRDGGREGGREGGGVLGAIERALPAFKPQELSILINALAKLDHDPGPAF
IRALGDAAAHKLNIFSPQDLSVALLSLARLGRDPGPSFLSTVVDAAERVL
PRCNAHDLSLLITGIARWELCPSPSFLASFLARTVVCLKDFRPQGLGHTL
RSLASLLPSPSSLPPSFLRPYLQRVEETREEMSASDAVLIAGGLGGLDVD
APPLFTKTFLMLLLREGATEALHANELSVVLNYFSRTGAIPSMLLTRLLA
VASQRLPLFGPPSLASSVFSLSRLPASPPPISFLDALRDRAQPLLPAFNA
QELANLLLAFARLTYYPGPSFLDAVAGQAVALLPRFTPQGICNVCNALAK
LSHDPGAAFWDGLDSLLFPPTASPSLTLFETAILLWSLAVLPSPLTSSLT
THLLRHVIDLLPRKKYKVPEDILVQLRQTLLHLEGQKTRRIPAAVIKSYR
AALAQANVEAASVRKSRSPTVSALQEEVGRALQRLFGSTNLMCEFDDQGI
FRFDFLLLPPSRSSSLIPLLPVVIEVDGPLHFRLNDIRRPMGDTAFKRRL
IRAQTQKYAGLVPIPWFEWRQATSPLTSKMKEGGKEGGVEAYLRDAFRLE
GLSLEDYLPSPTAPCPPPPAAAAATAVPTAPAPAVEGATSTTKTTVKSRR
KSSTKAASLTGETPVATIAAGTAAVMTGAGEEVIGEAAAEAVGATTRNRK
KRGRPAKKREEPEKREEEREGGIAAATTKVKGKVKQPEKEEEGQEEEAKV
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