NO15G00020, NO15G00020 (gene) Nannochloropsis oceanica

Overview
NameNO15G00020
Unique NameNO15G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr15:2170..3738 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:2170..3738 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR001810F-box_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO15G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00020.1NO15G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00020.1NO15G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00020 ID=NO15G00020|Name=NO15G00020|organism=Nannochloropsis oceanica|type=gene|length=1569bp
ATGAAGGGCTGCAGCACCAGCACCAGAGCGAGTCTCTCCTTTTCGCCAGA
TTCGTACCTGCCTCCTTCCTCCCTGTTCTCAACCACCCACGTCCTTCTGT
CCTCCCTTGCCATCAATTACGGTCTCTTCGCTCCGGCTCCTTCAAAGCCT
ATACCTGCTCTCCCCCCTGCCGGCCTTCCCTCTTCTCCACCTCCTCCCTC
CCCTTCAAGCAAAATCGACCCCGTCCTCGCCCTTCCGCGCGCTGTCGCCC
TTCACCTGCTTTCTTTTCTCAACCCCAAGCGCTTGGCCAAGGTCGAAGCC
GTGTCTCCCGCCTGGTACGATTTTTTATCCTCTCCCCTCTCCGACACCCT
TCTCTGGCGGCCTCTTCTTCCTCTCTTGCAAGCTCCTTTCACCGCCGATA
GCCATGAGGAAACGGAGGGTGCAAGGTCATTTCGGTGGGGAAGAGGGCAG
GGGCATCGACTGTGGCGGGAGCTCTACCAGAGGAGGAATAAGGTTTGGCG
GCGCCTGCGGAAAAGTATGTGGGGCCAGAACGTTCCGTCAATCTGTCGAG
AAAGATACCAAGCGGCAGACGCGGATGTCTACGCGCCTCCCTTGCTGTGT
GGGGCGGCCTTCCTAGATTTTGAAATGGAGGAGCGGCTGGTGGAATGGGA
TGCGGGGGGGTCCAATATGGCTCTCTCAAGTCCACGGTATAGCCCGGGCC
AGAGATTGTTTCGCGTTCTCTTCACGGACCTGATGAAGGTGGACTCCCCA
AGCGAGGTCAACCTCAGAGGAAAAGAAGGAGGGGAAGCTGGACAAGAGAG
TGTATTTGGAGCCTCGCCAACTCTGTGCCAGTATTGCGGAGGCCTGCGGG
AGCTCTTGTCATGGTGCCCGTCAGGAAAGATGTCAGTGGCGAAGGAATGG
CGGGGCGAGCCCCAGAGTGACAATGATAAGGAAGATGAAGAAACTGCTGG
AGAAGGAGAAGGAGGGGAAAAGCGGAGGAGCAAAAAGAGACGCCAGATTG
ACATAATGGAGGAAGATGCTCAGGCGGAGAAGAAGAATGGAGGGGTCGGG
CAGGAGGAGCGCGCCGTGCATGCTTGTATGCTTCTGGGGCGGTATGAGAA
ATTTGAAAGATGTAGAAGCAAATTAAGTAGCAGCAGTCGGACCAGCAGTA
GGAGTAAGGCAGCCCACGGCACAATTGAGATTGAGCGGGTCGTTCCCTTG
AATCGCTGGAAGTACGTATTTGGCACACGGTTGCAGTGTGAGACCTCCCT
TCTCTCCTCCTTCAAAGAGGCCGTCCGAGCCTGGCGCGCCATGAGGGAGA
GGGAAGAAGCCGCGATATGGCAGGATAAAAAGGTGTCAAAAAGGGTCGCA
GTACTATCAGCAGCGGTACATGAACACTCGTTGCGGCGCGTTTGTCGAGT
GTTGGGGTGCTTAGCGATCGTGACGCCAGACAACATTGTAGAGCATACGG
CATGGCACCGGGCCATGGCAAGGGCGGGTGGGAAAGAGGAATTGGGGGGA
CGGAAGGTAGAGGTCAAGTGCAAAGGAAAGAAGCTGCGAGAGACATGTGT
AAGGAAAGTGGAAAAATGA
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protein sequence of NO15G00020.1

>NO15G00020.1-protein ID=NO15G00020.1-protein|Name=NO15G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MKGCSTSTRASLSFSPDSYLPPSSLFSTTHVLLSSLAINYGLFAPAPSKP
IPALPPAGLPSSPPPPSPSSKIDPVLALPRAVALHLLSFLNPKRLAKVEA
VSPAWYDFLSSPLSDTLLWRPLLPLLQAPFTADSHEETEGARSFRWGRGQ
GHRLWRELYQRRNKVWRRLRKSMWGQNVPSICRERYQAADADVYAPPLLC
GAAFLDFEMEERLVEWDAGGSNMALSSPRYSPGQRLFRVLFTDLMKVDSP
SEVNLRGKEGGEAGQESVFGASPTLCQYCGGLRELLSWCPSGKMSVAKEW
RGEPQSDNDKEDEETAGEGEGGEKRRSKKRRQIDIMEEDAQAEKKNGGVG
QEERAVHACMLLGRYEKFERCRSKLSSSSRTSSRSKAAHGTIEIERVVPL
NRWKYVFGTRLQCETSLLSSFKEAVRAWRAMREREEAAIWQDKKVSKRVA
VLSAAVHEHSLRRVCRVLGCLAIVTPDNIVEHTAWHRAMARAGGKEELGG
RKVEVKCKGKKLRETCVRKVEK*
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Synonyms
Publications