NO14G03310, NO14G03310 (gene) Nannochloropsis oceanica

Overview
NameNO14G03310
Unique NameNO14G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1235
Alignment locationchr14:998982..1000216 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:998982..1000216 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0061617MICOS complex
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR007512DUF543
Homology
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: XP_005854147.1 (hypothetical protein NGA_0198301 [Nannochloropsis gaditana CCMP526] >XP_005854265.1 hypothetical protein NGA_0198302 [Nannochloropsis gaditana CCMP526] >EKU22093.1 hypothetical protein NGA_0198302 [Nannochloropsis gaditana CCMP526] >EKU22209.1 hypothetical protein NGA_0198301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 142.1 bits (357), Expect = 8.000e-31
Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 0 
Query:    1 MTQDAVTTPSMAEKVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKR 86
            M   +V  P MA KVPSELYISEKWD+CLER+VVN+ASGAVLGL SGFVLARTGHGRSLVAA+G+GCGVGASWVRCA DFE++++
Sbjct:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARTGHGRSLVAAVGVGCGVGASWVRCAQDFEEKEK 85
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: EWM24469.1 (Protein of unknown function DUF543 [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 49/87 (56.32%), Postives = 54/87 (62.07%), Query Frame = 0 
Query:    1 MTQDAVTTPSMAEKVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTG--------------HGRSLVAAMGL-GCGVGAS 73
            M   +V  P MA KVPSELYISEKWD+CLER+VVN+ASGAVLGL SGFVLAR                HGRS      L  CG+ AS
Sbjct:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARKSGLMEREGGERGTRMHGRSEDRLWSLIPCGMAAS 87
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: OQS06619.1 (hypothetical protein THRCLA_20334 [Thraustotheca clavata])

HSP 1 Score: 81.6 bits (200), Expect = 1.300e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0 
Query:   11 MAEK---VPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK 87
            MAEK   +PSE  ISEKWD+C+E  VVN ++G V G  +  VLARTG GR+ +   G G G GA+W  C+  FE+ + K
Sbjct:    1 MAEKKTSIPSEYRISEKWDKCIESFVVNFSAGLVAGGLTSLVLARTGSGRAALTGFGAGTGAGATWTTCSLAFEESQEK 79
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: XP_008865503.1 (hypothetical protein H310_03426 [Aphanomyces invadans] >ETW05726.1 hypothetical protein H310_03426 [Aphanomyces invadans])

HSP 1 Score: 81.3 bits (199), Expect = 1.700e-12
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:   14 KVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK 87
            K PSE  ISEKWD+C+E  VVN ++G V G  +  VLARTG GR+ +   G G GVGA+W  C+  FE+E  K
Sbjct:   33 KTPSEYRISEKWDKCVESFVVNFSAGLVAGGVTSLVLARTGAGRAALTGFGAGAGVGATWTTCSLAFEEELPK 105
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: CBJ25563.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 3.200e-11
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 0 
Query:   13 EKVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDF 81
            + VPSE  ISEKWD CLER+V+N  +G V    +G VL R+   R  V   G GCGVG+SWV C+ DF
Sbjct:    7 KNVPSEFKISEKWDVCLERTVINFGAGVVAAGLAGVVLTRSPGMRRAVMGFGAGCGVGSSWVICSQDF 74
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: XP_009823845.1 (hypothetical protein H257_02056 [Aphanomyces astaci] >ETV87046.1 hypothetical protein H257_02056 [Aphanomyces astaci])

HSP 1 Score: 77.0 bits (188), Expect = 3.200e-11
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:   16 PSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK 87
            PSE  ISEKWD+C+E  VVN ++G V G  +  VLART  GR+ +   G G GVGA+W  C+  FE+E  K
Sbjct:   35 PSEYRISEKWDKCVESFVVNFSAGLVAGGVTSLVLARTSAGRAALTGFGAGAGVGATWTTCSLAFEEELPK 105
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BLAST of NO14G03310 vs. NCBI_GenBank
Match: XP_008611916.1 (hypothetical protein SDRG_07838 [Saprolegnia diclina VS20] >EQC34510.1 hypothetical protein SDRG_07838 [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 7.300e-8
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 0 
Query:    2 TQDAVTTPSMAEK--VPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK 87
            T  AV  P+ A K  +PSE  ISEKWD+C+E  +VN ++G V G  +  VLARTG GRS +               C+  FE+E +K
Sbjct:   22 TTIAVVMPASAPKTEIPSEYRISEKWDKCIESFMVNFSAGLVAGGLTSLVLARTGAGRSALTGFXXXXXXXXXXXTCSLAFEEEAKK 108
[Close]
BLAST of NO14G03310 vs. NCBI_GenBank
Match: XP_012195296.1 (hypothetical protein SPRG_19101 [Saprolegnia parasitica CBS 223.65] >KDO34283.1 hypothetical protein SPRG_19101 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.2 bits (152), Expect = 4.700e-7
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0 
Query:    9 PSMAEK--VPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVLARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK 87
            P+ A K  +PSE  ISEKWD+C+E  +VN ++G V G  +  VLARTG GRS +               C+  FE+E +K
Sbjct:    2 PASAPKTEIPSEYRISEKWDKCIESFMVNFSAGLVAGGLTSLVLARTGAGRSALTGFXXXXXXXXXXXTCSLAFEEEAKK 81
The following BLAST results are available for this feature:
BLAST of NO14G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_005854147.18.000e-3177.65hypothetical protein NGA_0198301 [Nannochloropsis ... [more]
EWM24469.17.500e-1356.32Protein of unknown function DUF543 [Nannochloropsi... [more]
OQS06619.11.300e-1249.37hypothetical protein THRCLA_20334 [Thraustotheca c... [more]
XP_008865503.11.700e-1252.05hypothetical protein H310_03426 [Aphanomyces invad... [more]
CBJ25563.13.200e-1152.94conserved unknown protein [Ectocarpus siliculosus][more]
XP_009823845.13.200e-1150.70hypothetical protein H257_02056 [Aphanomyces astac... [more]
XP_008611916.17.300e-841.38hypothetical protein SDRG_07838 [Saprolegnia dicli... [more]
XP_012195296.14.700e-741.25hypothetical protein SPRG_19101 [Saprolegnia paras... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL136nonsL136Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR041ncniR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003292NSK003292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G03310.1NO14G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615637gene_11757Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100302g2gene6009Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G03310.1NO14G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G03310 ID=NO14G03310|Name=NO14G03310|organism=Nannochloropsis oceanica|type=gene|length=1235bp
ACAGAGTATACAGTCGTCAGATGACACAAGACGCGGTTACAACTCCCAGC
ATGGCGGAAAAGGTGCCAAGCGAGCTGTATATCTCCGAGAAGTGGGACAG
GTGCTTGGAGCGgtaagaaaaaaatgagagtagcggctgagctgcagtaa
cgttcttgtggcgctggacagtggaggcacgaggcgtaagcaatgacgat
agagagagaaataccgagtccgggaaagggagaagtgaaattggtttgag
aagggccgccagatgtcttgctgcttcgtctgaggtgtgtcccgcctgac
gcgtagggggacgaaaaacgcacagctttacaagcatctttcgtgactca
tcattctctcccttccctcaaaaaaagGAGCGTGGTGAATATTGCAAGCG
GTGCAGTTCTTGGTCTCTTCTCGGGCTTCGTCCTCGCCCgtacgtccccc
ccccaccccatcctttcttgctctcccatgcttcctccctcccttgccca
accattgactcactctcctccaatcaactaatcctctatgactctttttg
aattactatgcttcaacccgcgcacagGAACAGGCCATGGTCGAAGCCTG
GTGGCGGCGATGGGGTTGGGGTGTGGGGTGGGCGCCTCCTGGGTTCGGTG
TGCAAACGACTTTGAGGACGAGAAGAGAAAGTGAGGGGAGGAAGTGCATG
GGATCTATACATAGAAGATTGCAAGAATAGAGGGCGAAGAAGGGAAGAGG
GGGAGAGGCGGTGGAGGAAAGGGAGGGATGACGAGAAGATGTACTTGTTG
AGGTAAGGGAGGCGAAGTTGGGGGAGGAGGGAGTAGAGGGCGGTTGTCGC
TATTCCTCTTCTGTGTATGAGCATGCAAGTGCTGTTGAATGTTAAACGAG
ACAGATGGGTTCTGGGAGGAGGGCATAACCGCTCAGGCAAAAGGACGAGA
GTGGTGAGAAAGCGACTTACCCATCCTTTTTCTGTACGACGCGCACCACG
CCGAGCGTGAGCACACCCAACGGTGAACAAAGGTGCAGGACCGTTTGGAA
CGACCTTTATTGAAGAGAAGATTGATTGGAAGAAACACGAGACATGCATT
TTTTTGCATCTTCCGCACTTCTCTCCGAGCTCTATTCGTTTCTTCACCCA
ACGCATAGAAAAATAGAGGCAACAAAACCACTCATTATGCCCATCATCAT
ACAACTGGCACACTAGCGAAACACAAGCTTGCGAA
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protein sequence of NO14G03310.1

>NO14G03310.1-protein ID=NO14G03310.1-protein|Name=NO14G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MTQDAVTTPSMAEKVPSELYISEKWDRCLERSVVNIASGAVLGLFSGFVL
ARTGHGRSLVAAMGLGCGVGASWVRCANDFEDEKRK*
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Synonyms
Publications