NO14G03260, NO14G03260 (gene) Nannochloropsis oceanica

Overview
NameNO14G03260
Unique NameNO14G03260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2026
Alignment locationchr14:979383..981408 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:979383..981408 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G03260 vs. NCBI_GenBank
Match: XP_005853859.1 (hypothetical protein NGA_0447600 [Nannochloropsis gaditana CCMP526] >EKU22500.1 hypothetical protein NGA_0447600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 102.1 bits (253), Expect = 3.100e-18
Identity = 69/137 (50.36%), Postives = 83/137 (60.58%), Query Frame = 0 
Query:  108 DRLLFLTLPSLPLARTVGAYLVELGLARTVSLWPSTVETWMATDDGKMSTGRGGAREEFGLVVAARAGPAARLIQKEVRRLLLEANSEDVEEQQQGQRAPSIPSSS----DDNKWAVSRISGVQDPQGVSPF-SSPP 240
            +R LF T PS+  AR V A+LV+ GLARTVSLWPS+VETW A DDGK STGRGG R+E+GL+V ARAG AARLI  EV  L+          Q+ G  +PS   SS     D+K  +S  +          F SSPP
Sbjct:  134 ERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKRSTGRGGPRQEYGLMVMARAG-AARLIHLEVGNLVNGG-------QEDGAPSPSSSLSSFFSPTDHKIGISAFADQDQSPAFPTFPSSPP 262
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BLAST of NO14G03260 vs. NCBI_GenBank
Match: EWM24472.1 (hypothetical protein Naga_100239g2 [Nannochloropsis gaditana])

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:  108 DRLLFLTLPSLPLARTVGAYLVELGLARTVSLWPSTVETWMATDDGK 155
            +R LF T PS+  AR V A+LV+ GLARTVSLWPS+VETW A DDGK
Sbjct:  134 ERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGK 180
The following BLAST results are available for this feature:
BLAST of NO14G03260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853859.13.100e-1850.36hypothetical protein NGA_0447600 [Nannochloropsis ... [more]
EWM24472.11.400e-768.09hypothetical protein Naga_100239g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL136nonsL136Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR041ncniR041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003285NSK003285Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G03260.3NO14G03260.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G03260.2NO14G03260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G03260.1NO14G03260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615602gene_11752Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100239g2gene6001Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G03260.3NO14G03260.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G03260.2NO14G03260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G03260.1NO14G03260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G03260 ID=NO14G03260|Name=NO14G03260|organism=Nannochloropsis oceanica|type=gene|length=2026bp
AGGTACACCATCTAGCGTGCAACCATGCCAGTGATATGGAGACAAGGAGA
CAGGATCAGAAGCAGGAGCAGCTACAGCAGAAGACGTCGCCCTCGCGCTG
TATCCGGTGGATTGGGCTTTTTGCTTATGGCGGTTGCGACGACCACTACG
ACCACGgtacgtaccccaacgctgctgatgctacgaactctctcgacctt
tctctgtgaatgctcactgtgaagttttcgctcctctttccagGCCTGGC
TCACGCCCACCTGCCATCCTTCCGTTGCTATTACCTTCCAGCGTCAAGCT
ATTTCAACCAACCTGGCAAGCAGCAGCAATGTCAGAAGGAAAGATAGCAG
GACCCCTTCTCTCCTCCTGGGCATGCGCTTGTCATCCTCTGCCCTCAAGC
AGCAGCAGCATGATGACGACGAGGGCGACGAGGACCGCCTCCTCTTCCTC
ACCCTTCCCTCCCTCCCCCTTGCCCGTACCGTGGGGGCCTACCTGGTAGA
ACTGGGATTGGCACGCACCGTCTCATTGTGGCCTTCGACAGTAGAAACAT
GGATGGCGACAGACGATGGCAAGATgtaggtgtccggggaggcagagagg
aagggaggaggggagaagaggggtagtgcttggcaaggaaaaagggagcg
ctaacacgcaggacatgcatgtgcttgtgagtgcattctcatcctctctc
acatatacatactctttcactttgcatattccaagGTCGACAGGCCGTGG
CGGGGCCAGGGAGGAGTTCGGTTTGGTGGTGGCTGCCAGGGCTGGCCCGG
CGGCACGGCTGgtgggaagggagggagtgagggagggagggagggaggga
gggagggagggaaaataaggggcggtgatataaagagcgacggcacatta
aagaagtaccagaagagcatctaatcttcccatctctcctcatcccctcc
tctgtccttttccctacagATCCAAAAGGAGGTCCGCCGCCTCCTCCTCG
AGGCTAACTCGGAGGATGTCGAGGAGCAGCAACAAGGACAGAGGGCTCCG
TCCATCCCATCTTCTTCCGACGACAATAAATGGGCCGTCAGTAGGATAAG
TGGAGTCCAAGACCCTCAAGGTGTGTCTCCTTTCTCATCCCCTCCACTCC
TTCCTTCCTCCGTCCCTCCCTCCTCTCCTCCCTTTTCCCTCCCTCCCTCC
GTCCCTCCCTCCTCTCCTCCCTGTCCAAGTGAGCATCTCCTTTCTCTCAC
TCGTTGTTCATTTATTTCCTCTTCTATTCTTATGCGAAAGCCTTTCTAAT
CATGTAATAGAGCACAGGGCACCGAGTCTTGGGAGTTGAAGACATTACTT
TCGTCCCCGTCAAACGACCCATCCGCCATCCCTCCCTTCCTTCCTTCCTT
ACTTCCTTCCCCCTTTCAGACGAGCCCCCCCCCCCTTCGCCTTCCCGCAT
GAGCGAATACTCGGGCTTGTGGGAATGGGAAGAAGCCAATGCGTTCGATG
ACGAGTACTTCGAGGACGACGAGGACGgtgaggagggaaggagggaagag
gagagagagggagggagggacggagggagggatggtttgtgcactcttgt
actttaccctccagctttcggtctgaccagtatctcaacactcacgcgat
atatgctacttatccaccactccctccttccttctttcctccctccctcc
ccccctccctccagACCCCGTGCTGGTGCCTCACGAGGACATCATGATCG
TCAATGAGGAGGACGCGTATGAGTCCGTCGTGGGAGGAGGGAAGAAGGAA
AGGGGAAAGGACGACACGGGAGAGGTAGAGGGAGAACAGAAGGAGGATAA
GAAGGTGTTGGAGGATGTGGTGGCGAAGAAGGAGGGGAAGGAAGCAGCGG
AGGAGGAGGAGGAGGAGGAGTGGTGTGACGACGATGAGGTTCATAATGGG
CTGTTAGGCTGGTGAGCTTGACTCTGATATAGTTTTTTTCCCCAGAGAAT
ATACGAGGATGGAAAGCGATTTAAAT
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protein sequence of NO14G03260.3

>NO14G03260.3-protein ID=NO14G03260.3-protein|Name=NO14G03260.3|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MPVIWRQGDRIRSRSSYSRRRRPRAVSGGLGFLLMAVATTTTTTAWLTPT
CHPSVAITFQRQAISTNLASSSNVRRKDSRTPSLLLGMRLSSSALKQQQH
DDDEGDEDRLLFLTLPSLPLARTVGAYLVELGLARTVSLWPSTVETWMAT
DDGKMSTGRGGAREEFGLVVAARAGPAARLIQKEVRRLLLEANSEDVEEQ
QQGQRAPSIPSSSDDNKWAVSRISGVQDPQGVSPFSSPPLLPSSVPPSSP
PFSLPPSVPPSSPPCPSEHLLSLTRCSFISSSILMRKPF*
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protein sequence of NO14G03260.2

>NO14G03260.2-protein ID=NO14G03260.2-protein|Name=NO14G03260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MPVIWRQGDRIRSRSSYSRRRRPRAVSGGLGFLLMAVATTTTTTAWLTPT
CHPSVAITFQRQAISTNLASSSNVRRKDSRTPSLLLGMRLSSSALKQQQH
DDDEGDEDRLLFLTLPSLPLARTVGAYLVELGLARTVSLWPSTVETWMAT
DDGKMSTGRGGAREEFGLVVAARAGPAARLIQKEVRRLLLEANSEDVEEQ
QQGQRAPSIPSSSDDNKWAVSRISGVQDPQGVSPFSSPPLLPSSVPPSSP
PFSLPPSVPPSSPPCPSEHLLSLTRCSFISSSILMRKPF*
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protein sequence of NO14G03260.1

>NO14G03260.1-protein ID=NO14G03260.1-protein|Name=NO14G03260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MPVIWRQGDRIRSRSSYSRRRRPRAVSGGLGFLLMAVATTTTTTAWLTPT
CHPSVAITFQRQAISTNLASSSNVRRKDSRTPSLLLGMRLSSSALKQQQH
DDDEGDEDRLLFLTLPSLPLARTVGAYLVELGLARTVSLWPSTVETWMAT
DDGKMSTGRGGAREEFGLVVAARAGPAARLIQKEVRRLLLEANSEDVEEQ
QQGQRAPSIPSSSDDNKWAVSRISGVQDPQDEPPPPSPSRMSEYSGLWEW
EEANAFDDEYFEDDEDDPVLVPHEDIMIVNEEDAYESVVGGGKKERGKDD
TGEVEGEQKEDKKVLEDVVAKKEGKEAAEEEEEEEWCDDDEVHNGLLGW*
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Synonyms
Publications