NO14G03050, NO14G03050 (gene) Nannochloropsis oceanica

Overview
NameNO14G03050
Unique NameNO14G03050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1934
Alignment locationchr14:898941..900874 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:898941..900874 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO14G03050 vs. NCBI_GenBank
Match: EWM24501.1 (hypothetical protein Naga_101196g1 [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 2.800e-18
Identity = 81/229 (35.37%), Postives = 107/229 (46.72%), Query Frame = 0 
Query:  126 SIVADTLNCITTHFPPDAPSE-----KSSAV----AYSRATKSLYKSLVTIAAIALDGNYSSPXXXXXXXXXXXXXXXXXRPDLSLVQAAELLLTATSTDRSTLPRFLSFKQQADLSNRASDLASLRALYLKGPTLPLPPSLPSSLSTPRLTVLNDICLNEFRALVPPAQRMAHIEEARQRLEYALHQHGPFRVCQVMVFGSAYCGLGTSQSDIDFCLVHPSLAREIAA 346
            SI+ D  +C+  H+PP   S      +S+ V      S    ++Y SL  +A +A DG+  +                   P   L  AA LL  A   D S+   FL  KQ   L  +A  LA L A YLKGPTLP         S    T+L   C+  F  L PP      +E  R RLE  L +H  FR  +V+VFGSA CGLG+S SDID  L   +L++++AA
Sbjct:  121 SIIDDLHSCLGIHYPPRPSSSXXXPPQSTPVLKKFQVSPGAYAIYTSLTQVALLAADGHAGA-----FPPPSKRVQPCPSDPSSCLRHAARLLHRAVRADLSSFLSFLKGKQAEALRKQAQRLADLHAWYLKGPTLPXXXXXXXXXS--HSTLLEATCVECFDRLCPPPDLAEEVEAVRDRLEGVLREHPAFRSARVLVFGSAPCGLGSSGSDID--LSRGTLSQKVAA 340
The following BLAST results are available for this feature:
BLAST of NO14G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24501.12.800e-1835.37hypothetical protein Naga_101196g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G03050.1NO14G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101196g1gene5976Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G03050.1NO14G03050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G03050 ID=NO14G03050|Name=NO14G03050|organism=Nannochloropsis oceanica|type=gene|length=1934bp
CGGTGTACCAATGTTTATGATGGCCAGCCTGCATTCTATTCAGGGTTAAG
TTCACAAACGGCTGTCGGGCCTTTCAACCTCCCACCTCCATCACTAGGCA
GTGAGTTGAAGCAGATGAAGCCAATTGAATTCATGCACAACAACACTCAC
ACACGGCTTGCCATCCGCCGAAACCTTCGTCCCCTCACACACCACACATT
AAAGCAGAAAGACCGCCATGGAACCCTTGCAACTTATGGTGGCAGTGCGA
GCGACGTATGCAGAGGACAACCCTCCTGCCGAGCCTCCTAATCCAGCTCC
TCCTCCTTCCGTCAATGGCACGAAGCCACAGGGACAGACCAATGGGGTTG
TTGCTGCGGAGGCGGGCGCGGTTAAAGCCTTGGAAGACGCAGCTTTTCGC
ATTCATTGGAACTTGTCAATGATGGAAGGGGTGGGAGGGGGACGCGGAGG
CGGCGATGGTGCTGCAGCTGCCGCAGACAACGAGGATGGTGCTGCAGCAG
CAGAAAACAATGAGGACGATGCGATGAAGGAAGAGAGAAATGAAATCCGC
GCAGATGACTCCCGCGACACTCAGGCATTTGGTAATTTCCAATCAATCGT
GGCGGACACTTTGAATTGCATTACCACGCACTTCCCTCCCGATGCTCCCT
CGGAAAAATCGTCTGCCGTAGCATATTCCCGTGCTACCAAGAGCTTGTAC
AAATCCCTCGTGACCATCGCAGCCATAGCCCTAGACGGGAACTACAGTAG
CCCTCCCTCTACGCCTACTCCTCCCTCCTCTCCCTCTTCCTCCGCTGCTG
CTGCCAGGCCTGACCTGAGTCTGGTGCAAGCTGCCGAGCTCCTCCTCACT
GCAACTTCGACCGATCGCTCCACCCTCCCTCGCTTCCTCTCCTTCAAACA
ACAGGCCGACCTCTCAAATCGTGCCTCTGATCTAGCTTCCCTTCGCGCCC
TCTACCTCAAGGGCCCCACCCTCCCCCTCCCTCCCAGCCTCCCTTCCTCC
CTTTCTACCCCCCGCCTAACCGTTCTAAACGATATCTGCTTGAATGAGTT
TCGGGCGCTCGTCCCACCAGCTCAACGGATGGCCCATATCGAGGAGGCAA
GGCAACGGCTGGAGTATGCCCTGCATCAGCACGGCCCCTTCCGGGTATGC
CAGGTGATGGTGTTTGGCTCCGCCTATTGCGGGCTCGGAACGAGTCAGAG
gtacgtgggtggggggaagaagggagggagggaaggagggagggacggga
ctggaggaggggagcagaaacagggtggaggatgtgtatgtgtggcattt
gcgcttggttggggggtggcgtggggaagatgaggaaacgtatcttccgg
gtacatgaggaccgaattatttggcgttaacaagcagctccacgcttagc
ttccttctcccggccctctccctcccaccctcattgctggcctctggccc
tcccctcctttcttgcaggaactctttgatctagactgtgtgcggtgagc
cctcacctcttctccctccctccccccctccctgcagTGACATCGATTTC
TGCCTCGTTCATCCCTCCCTCGCCCGCGAAATAGCTGCCCTCGAAGCCGA
GAGGGACTCCGCGCTCTCCGTCCTCCGGCACGAGAAACATCAACCCTTCC
TCTGCCTCCAGCAAGACGAGAAGACGTGCCAGAGGGCTGTCTCGTTGCTG
TCAAACAAGCAGCAGGCCTTGGCCCGTGCACGCCAGGCGTTGCAAAGCCT
TCAAACCACAGAGCAAAGGAGCGAGAAAGACGAAAAAAGCATTCGGAAGG
CGGAGTTTGATGTCAGGAAGCAAGAACGGCTAGTAAAGGAGAGGGAGCAG
TTCCTGGCCGCCGCCAGGGCCGCGCTGGAGGGGACTGTGAGGAGGATGGA
GGGAGACGGGGGGGGGGGGGGAGGGAGGAGGTGA
back to top

protein sequence of NO14G03050.1

>NO14G03050.1-protein ID=NO14G03050.1-protein|Name=NO14G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MEPLQLMVAVRATYAEDNPPAEPPNPAPPPSVNGTKPQGQTNGVVAAEAG
AVKALEDAAFRIHWNLSMMEGVGGGRGGGDGAAAAADNEDGAAAAENNED
DAMKEERNEIRADDSRDTQAFGNFQSIVADTLNCITTHFPPDAPSEKSSA
VAYSRATKSLYKSLVTIAAIALDGNYSSPPSTPTPPSSPSSSAAAARPDL
SLVQAAELLLTATSTDRSTLPRFLSFKQQADLSNRASDLASLRALYLKGP
TLPLPPSLPSSLSTPRLTVLNDICLNEFRALVPPAQRMAHIEEARQRLEY
ALHQHGPFRVCQVMVFGSAYCGLGTSQSDIDFCLVHPSLAREIAALEAER
DSALSVLRHEKHQPFLCLQQDEKTCQRAVSLLSNKQQALARARQALQSLQ
TTEQRSEKDEKSIRKAEFDVRKQERLVKEREQFLAAARAALEGTVRRMEG
DGGGGGGRR*
back to top
Synonyms
Publications