NO14G03020, NO14G03020 (gene) Nannochloropsis oceanica

Overview
NameNO14G03020
Unique NameNO14G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1111
Alignment locationchr14:893224..894334 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:893224..894334 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G03020 vs. NCBI_GenBank
Match: XP_005855435.1 (hypothetical protein NGA_0126100, partial [Nannochloropsis gaditana CCMP526] >EKU20928.1 hypothetical protein NGA_0126100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.1 bits (383), Expect = 2.300e-33
Identity = 83/170 (48.82%), Postives = 112/170 (65.88%), Query Frame = 0 
Query:   76 LILRYNLTKLLCDVLNADPACISLMHVYNLLKRAKNIK-RPLTNAVLITAWGDINDLLYAYEGKLPFDIYDQALGVYGNDAAKLILNCDANILKNTAPHPSQRIRSVSLLETLRPLRETVELETGDEAMSLRRCLSWVSDRDARSRNGAGRGSGEE-FTDQPDTDMLLMW 244
            L+ RY + + LC+ L A+PAC+SL HV++LLK AK  + R LTNA+LITAWGD+NDLLYA+ G LP++IYD+ L +YG DAA L++NCD + L  +A +     R V LL++L+ LRE+V  ET  EA SL + L W      +S    GR  GE  FTD  D ++L  W
Sbjct:   80 LMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAETEGEAYSLCQFLLW------KSGQLPGRAKGENGFTDFQDVEVLGQW 243
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BLAST of NO14G03020 vs. NCBI_GenBank
Match: EWM24505.1 (hypothetical protein Naga_100796g4 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 1.900e-27
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 0 
Query:   76 LILRYNLTKLLCDVLNADPACISLMHVYNLLKRAKNIK-RPLTNAVLITAWGDINDLLYAYEGKLPFDIYDQALGVYGNDAAKLILNCDANILKNTAPHPSQRIRSVSLLETLRPLRETVELETGDE 202
            L+ RY + + LC+ L A+PAC+SL HV++LLK AK  + R LTNA+LITAWGD+NDLLYA+ G LP++IYD+ L +YG DAA L++NCD + L  +A +     R V LL++L+ LRE+V    G E
Sbjct:   85 LMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAVRGKE 211
The following BLAST results are available for this feature:
BLAST of NO14G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855435.12.300e-3348.82hypothetical protein NGA_0126100, partial [Nannoch... [more]
EWM24505.11.900e-2751.97hypothetical protein Naga_100796g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G03020.1NO14G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671109gene_5883Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100796g4gene5973Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G03020.1NO14G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G03020 ID=NO14G03020|Name=NO14G03020|organism=Nannochloropsis oceanica|type=gene|length=1111bp
ATGCACCGAACCACTTCGCACTCGCAGGCACAGCATCCTCACAAGCCACA
TCAGCCGCAGGACCCTCACAAGCCACAGCTGCACGCGGAGCAGCAGAGCG
AGCAACAGCAGTCGCCGGAGCATGTACACCCGCAGCAGCACCCGCAGCAG
CAGCACCAGCAGCAACGCACTCAGCATCATGAACAACAGATACATCCAGC
CCCCCAACAACAAGAGCATGTCGCCCTCATCCTCCGTTACAACCTCACTA
AGCTCCTATGTGATGTCTTGAACGCAGATCCGGCGTGCATCAGTCTTATG
CATGTTTACAACTTACTTAAGCGGGCGAAGAACATCAAACGCCCCTTGAC
GAATGCCGTGTTGATCACGGCATGGGGGGACATAAATGACCTTCTTTATG
CCTACGAGgtaaggtttatggacgatggaaagggggacagcaaaacaacg
tggaaatcgagattggcaggacgacacttactcatcccctcaaacccctc
ccttctcccctctccccgaaacccacaagGGCAAACTGCCCTTTGACATT
TACGACCAGGCCCTGGGTGTGTACGGAAACGACGCGGCCAAGCTAATTTT
AAACTGCGATGCCAACATTTTGAAAAACACAGCGCCGCACCCCTCGCAAC
GCATCCGCTCTGTGTCTCTCCTGGAAACCTTGCGGCCCCTCCGGGAGACT
GTTGAACTGgcacgtgtttcccctccttcctacccactcgcaacatgttg
gcttcctatgagtttcactgcccacttcacccgtccagtctgtcttttcc
gttaccgctttcctccccatcacgtccttgtgatcttctcctacattcct
tcgccaactcatttcaccgtttccctccctccctcccttcctttctccct
ctctccctctcagGAAACCGGTGACGAAGCGATGAGCCTGCGGAGATGCC
TGAGCTGGGTTAGCGATCGCGACGCTAGGAGCCGAAATGGGGCGGGGAGA
GGGAGTGGGGAGGAGTTCACGGACCAGCCGGACACTGATATGTTGTTGAT
GTGGGCCGAGGGGCAGGGACCGGGGCGCGGCACGATAGGTAACGGCGGCC
GCAGTCGTTGA
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protein sequence of NO14G03020.1

>NO14G03020.1-protein ID=NO14G03020.1-protein|Name=NO14G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MHRTTSHSQAQHPHKPHQPQDPHKPQLHAEQQSEQQQSPEHVHPQQHPQQ
QHQQQRTQHHEQQIHPAPQQQEHVALILRYNLTKLLCDVLNADPACISLM
HVYNLLKRAKNIKRPLTNAVLITAWGDINDLLYAYEGKLPFDIYDQALGV
YGNDAAKLILNCDANILKNTAPHPSQRIRSVSLLETLRPLRETVELETGD
EAMSLRRCLSWVSDRDARSRNGAGRGSGEEFTDQPDTDMLLMWAEGQGPG
RGTIGNGGRSR*
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Synonyms
Publications