NO14G02850, NO14G02850 (gene) Nannochloropsis oceanica

Overview
NameNO14G02850
Unique NameNO14G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1736
Alignment locationchr14:847392..849127 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:847392..849127 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO14G02850 vs. NCBI_GenBank
Match: EWM24534.1 (hypothetical protein Naga_100175g7 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 1.100e-100
Identity = 186/242 (76.86%), Postives = 202/242 (83.47%), Query Frame = 0 
Query:   33 MGRPTYVRLLSKRANFFLSSAVLLKCLTLGLYLLALSHRNGWANSETTSSNGLITYTGHWGLFVVHFEGLYKAGGVEARYTSTEAISGWASVAGGNSTVLHKVRTVQAFSVIGGIVKILGTVSFISGRFAARTATQALTLLDKGRAFNIGFLLCNLLVTSIWASLPENAFFFFCNVYPQQEGASSCISTHFKPPLGNSSWQGRSYSFDLVVAATXXXXXXXXXXXXXXXXXXXLAEEEGLGL 275
            M RPTYVRLL K AN  LS+AVLLKCLTL LYL+ALSHRNGWA+S+TTSSNGLITYTGHWGLFV  FEG YK GGVEA YTSTE ISGWASVAGGN+TVLHKVRTVQAFS+IGG+VKILGTVSF+SGRFAARTA QAL LLD+GR  N+ FLLCNLLVT++WASLPENAFFFFCNVYPQ+EG SSCISTHF PPLGNS W+GRSYSFDLVVAAT                   LAEEE +G+
Sbjct:    1 MARPTYVRLLPKHANVLLSAAVLLKCLTLALYLVALSHRNGWAHSKTTSSNGLITYTGHWGLFVARFEGDYKVGGVEAHYTSTEPISGWASVAGGNNTVLHKVRTVQAFSIIGGVVKILGTVSFVSGRFAARTAAQALALLDRGRLLNVSFLLCNLLVTAVWASLPENAFFFFCNVYPQEEGVSSCISTHFTPPLGNSEWEGRSYSFDLVVAATVCAVLAALAGALARRPLRKLAEEEDMGM 242
The following BLAST results are available for this feature:
BLAST of NO14G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24534.11.100e-10076.86hypothetical protein Naga_100175g7 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02850.1NO14G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671096gene_5868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02850.1NO14G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02850 ID=NO14G02850|Name=NO14G02850|organism=Nannochloropsis oceanica|type=gene|length=1736bp
ATGACGCACCCAAGACAAGACCACAGCACGATCACGGCAAACACTTCCAA
GGCAACCGCGGGGGCCTTTGCCGGGACGGTTAACCACGgtgtggtacttt
tttttcccctttcagaacactctcgtctgctcttcaagcttcgctcttca
ccccccagcttctcgatcaccacaaccaaaccacagCTACAGCCATGGGT
CGGCCCACCTACGTGCGCCTATTGTCCAAGCGCGCCAATTTTTTCCTTTC
TTCAGgtacgtgcattgcgatcatgcctgtctatcttcgactgaacccca
tccttttgtttcgtctccatcattggcgtgccaggctggcgcataattcc
ctcgctctcaccacctcttccctccttccactccaccaccttcctttcaa
agCTGTCCTCCTGAAATGCTTGACCCTCGGCCTCTACCTTCTCGCCCTCT
CCCACCGCAACGGATGGGCCAACTCGGAGACTACGAGCAGCAACGGCCTG
ATCACTTACACGGGGCATTGGGGGTTGTTTGTCGTGCACTTTGAGGGCTT
GTACAAAGCAGGAGGGGTGGAAGCACGTTACACCAGCACGGAGGCCATCT
CGGGCTGGGCTTCGGTTGCAGGGGGAAACAGTACAGTCTTGCACAAGgta
aggaaaatgtgacaggagagatggttgattcgacgcagcttttttcctca
tgtcctccctcatttccttcttccgtagGTGCGAACAGTGCAGGCGTTTA
GTGTGATTGGTGGCATCGTCAAAATCCTTGGAACTGTCTCGTTTATTTCC
GGTCGCTTCGCGGCTCGAACTGCCACCCAGGCCTTGACGTTGCTGGATAA
AGGCCGCGCGTTTAATATTGGCTTCTTGTTGTGCAATTTATTGGgtaggg
agggaggaacggagggagaggaggaaaatggtagaccttgaatatttata
agttgagggtaatggtaaatattttcgccctttgcatctctttacccaca
tcccctccctccctccctccctccctccctcccacccacagTCACCTCCA
TCTGGGCCTCTCTCCCCGAAAACGCCTTTTTCTTCTTCTGCAATGTCTAC
CCGCAGCAGGAAGGTGCGTCTTCATGCATCTCCACGCATTTCAAACCTCC
TCTCGGCAACAGTTCTTGGCAAGGGCGGTCGTATTCATTTGACCTGGTGG
TGGCTGCCACTGTTTGTGCAGTCATCGCCGCCGTGGCAGCCGCCCTGGCC
AGACGCACGCTTCGGAGGCTTGCTGAGGAGGAGGGACTAGGACTGGCGGG
AAGAGGTGGGGGAGGAAGGGGGGGGACATGGCGACAGCGATCTTGGATTT
GGACCAGCCGTTGGTGAGCCCGTCGGCTCCGCCAGAGGCGAGGAAGGTGG
TGGTGTAGAGGAGGAGGATGAAGAGGAGGGAGATAGAGAGGTTGCGTTTG
TGTAGGGGTGTGCGTGTGTGAGAGTGAGAGAGAGAGGAGATGGAGTACGC
TTGGTGTTTGTCGTGACGGTTCTGCGATGGATGGCCTGTTTATTCACGGC
ATGAGGGTGCCCGATGTGCCGGGGAGGGGCAAGCGAAAGAAAAAGATGGG
GGAGGGATAGGAAAAAGGAGAAAAGAAATTTACATCGACGACGAGTTAAT
GTACGCATATAAATAAGAGGGCAAGACGGACGAGCGTACCTTCTTTCTTT
TCCTTCTCTTCATGCACTCTTAATTTGTTTTTGGCG
back to top

protein sequence of NO14G02850.1

>NO14G02850.1-protein ID=NO14G02850.1-protein|Name=NO14G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MTHPRQDHSTITANTSKATAGAFAGTVNHATAMGRPTYVRLLSKRANFFL
SSAVLLKCLTLGLYLLALSHRNGWANSETTSSNGLITYTGHWGLFVVHFE
GLYKAGGVEARYTSTEAISGWASVAGGNSTVLHKVRTVQAFSVIGGIVKI
LGTVSFISGRFAARTATQALTLLDKGRAFNIGFLLCNLLVTSIWASLPEN
AFFFFCNVYPQQEGASSCISTHFKPPLGNSSWQGRSYSFDLVVAATVCAV
IAAVAAALARRTLRRLAEEEGLGLAGRGGGGRGGTWRQRSWIWTSRW*
back to top
Synonyms
Publications