NO14G02750, NO14G02750 (gene) Nannochloropsis oceanica

Overview
NameNO14G02750
Unique NameNO14G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2997
Alignment locationchr14:803812..806808 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:803812..806808 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_008334430.1 (PREDICTED: uncharacterized protein LOC103397816 [Cynoglossus semilaevis] >XP_008334431.1 PREDICTED: uncharacterized protein LOC103397816 [Cynoglossus semilaevis])

HSP 1 Score: 170.2 bits (430), Expect = 2.400e-38
Identity = 115/481 (23.91%), Postives = 220/481 (45.74%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEG--GVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFES-----HP-GELFSRIGAAAVTLGAKDDVGYAG-------------------------------------------------------------VLKMRGLPFQTTVPDVATWFGAYRV--APHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVI--GLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEV 637
            +V++ G+P++ + QD+++FF    + +G  G+H+  D  GRPSG+A++  E   +   AL+  ++ +G R++++F  + ++                     AI       V+    T V+R+RGLPF CT  ++  FF  +    NGI F     GR SGEAFV   SH    +AL +D++ +G+R++ +F S     +P  E+   +G A +   +++ +  A                                                              +++++GLP+ T+  ++  +F   R+     G+ +T+   GRP+G  ++  E  ED   A E  ++Q +  R++++Y  +  D       +           +  N      RLRG+P T +E ++ +FF+GL ++  G+    D +GR +GEA+ +F SL +  +A+ ++R++     +G+R I+V ++S  E+
Sbjct:   95 IVQVNGLPWSCSAQDLMEFFSECRIRDGQSGIHLTVDRLGRPSGRAFIEMEHREDVSKALEQHRQYLGSRYVEVFEVTTSD-------------------AEAILKKALAQVAADDST-VVRLRGLPFTCTEDNIVQFFTGLDIVENGITFVTDFTGRRSGEAFVQFSSHQEAVEALQKDREFIGNRYIKVFRSKNDEINPCSEIKMTLGPAQIDPQSENTIVSAPQCNPETESIQSFETTLHDTYLRDSFSKATSQEAKESDLSSDDELTPQPVQQSEEPEKKDVFIVRVKGLPWSTSAEEIMHFFSDCRIRGGLDGIHLTLDRRGRPSGRGFIEMEDEEDVSRALEK-HRQYIGERYVEVYEVTNSDAEAMLKKN-----------LEPNAKSEVVRLRGLPFTCTEADVVQFFRGLDIVENGITFVTDFTGRRSGEAFVQFSSLQEAVEALQKDREF-----IGNRYIKVFSSSSNEI 538          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: GAQ85369.1 (hypothetical protein KFL_002320030 [Klebsormidium nitens])

HSP 1 Score: 168.7 bits (426), Expect = 7.000e-38
Identity = 126/432 (29.17%), Postives = 200/432 (46.30%), Query Frame = 0
Query:   98 ILRLSGLPWKCSVADVQNFLKEAGLSEIADPAADIKILD---DSSGEALLRVSSADEEXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPATSEEAMNAPATVVLESASEAAAGAGDAAATDATSLAEAESTMLQGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGY----AGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLA 523
            ++RL GLPW  +  D++ FL+   +     P   I  LD     SGEA++  +S ++                             A          P    L     +A G  DA                +GV+R+RG+P+ A E+DV+ FF G+ V   GV +     GR SG A+V F     A+ A++L++E++G R+++LF ++K +M  A+          A    AA R +          +  I++RGLPFD    D+Q FF       N I       GR +GEAFV   S     +A+ ++ +++G R++++F     E+    GA A   G    V      A  +KMRGLPF+ TV D+  +F  + V    + +   +DGRP+GEA+V F +PE+A  A   +N++ M NR+++L+ A
Sbjct:  116 VVRLRGLPWDTTSQDIERFLEGVQMG----PEGIILTLDARGRPSGEAIVECASIEDADLALGKNNGYVGNRWIEVFPAGYQDLDFAKKNQNLTAIKPE---LTEDDLSAFGNPDAG--------------YKGVLRMRGLPFRAVEEDVVDFFTGYDVVGNGVFLCRLADGRLSGDAFVEFVDEETARKAMELNREQMGRRYVELFPTTKGDMVSAIKI-------HAQRVAAAWRETAS--------SSYIKLRGLPFDVEEGDIQDFFTGYDIKPNSIKITESFPGRKTGEAFVEFSSPAEADRAMQENNKEIGVRYIELFRVREEEV---NGAPAEGRGKGGRVSVNSDPAATIKMRGLPFRATVGDIVIFFEGFDVLKDTITLGTTSDGRPSGEAWVAFASPEEATRAIRQMNREYMGNRFVELFPA 508          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_018574155.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Anoplophora glabripennis])

HSP 1 Score: 168.7 bits (426), Expect = 7.000e-38
Identity = 117/391 (29.92%), Postives = 191/391 (48.85%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEG--GVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPK-GVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYM 617
            +V+LRG+P++AT  D+ KFF+   +  G  GVHM     GRPSG+A+V FE A + + A++ D+E IG R+I++F  ++AEM                     I+ SGP  G +  G    +R+RGLPF C++ ++  FF  +    NGI       GRSSGEA+V   + +   +AL + ++K+G R+++IF S   E+ S +G      G +   G +G+   R  P+     D   +  + R    G     GA+    G  Y  ++ P                + W+     S+         SP +    GG    A   M C  +RG+P   ++ ++  FF+ +  + + + +D +GRA+GEA  EF S DD  +AMS+++ +M
Sbjct:   12 IVKLRGLPWSATTDDIQKFFRDCKILGGKFGVHMTSSREGRPSGEAFVEFEDAEDVEIAIQKDREHIGNRYIEVFKVNRAEM------------------EWVIKRSGPTYGSNEDG---CVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGEAYVQFVNREVAEKALQKHREKIGHRYIEIFRSSLSEVNSVLGYQ----GRRGGSG-SGMYNSRPGPYDR---DRDRYGSSGRFQSRGSRSFKGANFSNNGSDYNSYDRP----------------SPWLS---NSRNGSEIGGPRSPYMDSWGGGSERSAG--MHCVHMRGLPFKATQSDILDFFKPVIPVNVRLLQDHTGRASGEADVEFASHDDAVRAMSKDKGHM 352          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_010673643.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein H [Beta vulgaris subsp. vulgaris] >KMT14497.1 hypothetical protein BVRB_4g072690 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 167.5 bits (423), Expect = 1.600e-37
Identity = 103/304 (33.88%), Postives = 169/304 (55.59%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRI--GAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTA 531
            VVRLRG+P++ TE DV +F +G  + +  + +H    GR SG+AY V     +   AL+ +++ IG R++++F S + E + A+ T       G      +   S  +G  +   T ++R+RGLPF   R D++ FF       + I       GR SGEAFV     +  R A+++DK  +GSR++++F +   ++   I  G A       + V + GVLKMRGLPF  T  D+  +F  + ++   + IT  +DGRPTGEA+V F + ED+ AA E  +++T+ +R+I+L+ +S+ D+  A
Sbjct:   70 VVRLRGLPFDCTEADVQEFLRGLDLVD-ILFVHKG--GRFSGEAYCVLGYPMQVDFALQRNRQNIGRRYVEVFRSKRHEYYKAI-TNEVADASGVSPHRGSRAKSYDEGKELLEHTGILRLRGLPFSARREDIKKFFKDFVLADDVIHITYNSAGRPSGEAFVEFPGPEDSRGAMVKDKMTLGSRYVELFPASREDMAEAIAKGRANSQDDLNEPVKHTGVLKMRGLPFSATKEDIIEFFDGFVLSEDSIHITSMSDGRPTGEAFVEFASAEDSEAAMEK-DRKTLGSRYIELFASSQEDLNEA 368          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_024388702.1 (epithelial splicing regulatory protein 2-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 167.5 bits (423), Expect = 1.600e-37
Identity = 121/394 (30.71%), Postives = 192/394 (48.73%), Query Frame = 0
Query:  195 VVLESASEAAAG-AGDAAATDATSLAEAESTML----QGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTM-RGYGGPGAGGGGAAIRSSGPKGVSIGG-----ITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL-----------------FSRIGAAAV--TLGAKDDVGYAGV---------------------------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VV +S ++ + G A ++ AT A  L    +  +      VVRLRG+P++ATE D+  FF+G  +   GV +  +  GR +GQAYV F +A  A  AL+ +++ IG R+I++F    A+M  AL  + RG G                             T V+R+RG+P+ CT  D+  FF  +   A+GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F S  GE+                 FS+ G   +   +GA    G  G+                           +KMRGLP+     ++  +F  Y   P+G+ I MGA  RPTGEA+V F + ++A  A E  ++Q + +R+I+L+ A+K ++  AT
Sbjct:   28 VVRQSKAKPSQGKANESKATLAVKLVSITTIAILKKRSNVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVXXXXXXXXXXXXXXXXXXXXXXXDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTVPQGLSDTSEHVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRAMER-HRQNIGSRYIELFRATKSEMLLAT 420          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_024388703.1 (epithelial splicing regulatory protein 1-like isoform X2 [Physcomitrella patens])

HSP 1 Score: 167.5 bits (423), Expect = 1.600e-37
Identity = 121/394 (30.71%), Postives = 192/394 (48.73%), Query Frame = 0
Query:  195 VVLESASEAAAG-AGDAAATDATSLAEAESTML----QGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTM-RGYGGPGAGGGGAAIRSSGPKGVSIGG-----ITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL-----------------FSRIGAAAV--TLGAKDDVGYAGV---------------------------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VV +S ++ + G A ++ AT A  L    +  +      VVRLRG+P++ATE D+  FF+G  +   GV +  +  GR +GQAYV F +A  A  AL+ +++ IG R+I++F    A+M  AL  + RG G                             T V+R+RG+P+ CT  D+  FF  +   A+GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F S  GE+                 FS+ G   +   +GA    G  G+                           +KMRGLP+     ++  +F  Y   P+G+ I MGA  RPTGEA+V F + ++A  A E  ++Q + +R+I+L+ A+K ++  AT
Sbjct:   28 VVRQSKAKPSQGKANESKATLAVKLVSITTIAILKKRSNVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVXXXXXXXXXXXXXXXXXXXXXXXDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTVPQGLSDTSEHVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRAMER-HRQNIGSRYIELFRATKSEMLLAT 420          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: CBY09778.1 (unnamed protein product [Oikopleura dioica])

HSP 1 Score: 167.2 bits (422), Expect = 2.000e-37
Identity = 120/430 (27.91%), Postives = 212/430 (49.30%), Query Frame = 0
Query:  222 ESTMLQGVVRLRGMPYNATEQDVLKFFQGFGVT---EGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHAL-PTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL----------------FSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGA-YRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTA 631
            E  + + V+RLRG+PY+    +V++FF         E GVH      GRP+G+AY+  ET A+ + A+  D+ ++ +R+I++F ++  EM + L  T R    P                       +V+++RG+P+ CT   ++ F   +   A+G+       GR++GEAFV L SH+   QAL++ K+ +  R++++F++   E+                +S+  ++   +G   D  Y  V++MRG+PF+ T   V ++FG  + ++   V   +GAD RPTG A V F T EDA  A +  +K+ M  R+I+L + S       + ++PI G    G  ++         +RG+P  V   ++  FF  + ++ +++     G  TG     F S  +   A+ R+++      +GDR IE+ A
Sbjct:   14 ERRLPRRVIRLRGLPYSCCGAEVVEFFADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKAMIKDRTQLQDRYIEIFKATTEEMDYVLEKTERQANQPW---------------------ENVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAEQALLKHKECIDRRYIEVFKATRAEMSQASQSLHNHCNGDHYYSQQNSSLKGVGL--DGVYRHVVQMRGIPFRATEEQVRSFFGLDFEIS--AVQFEIGADHRPTGRASVAFPTHEDAEKAMKK-DKECMGKRYIELMILS-------SQNTPIDGIGPNGEYLF------MIHMRGLPFRVHARDIVSFFDPIPILDIHLEMGPKG-PTGAGQVAFFSAQERSDALKRDKE-----NIGDRYIELFA 398          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: EFJ14378.1 (hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii])

HSP 1 Score: 166.8 bits (421), Expect = 2.600e-37
Identity = 102/344 (29.65%), Postives = 170/344 (49.42%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGA--GGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRI-------------------------------GAAAVTLGAKDDVGYAGV--------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++ATE D+ +FF+G  +   G+ +  +  GR +GQAYV F TA  A  +L+ +++ IG R+I++F    A+M  A+  M G G  GA                                + CT  D+  FF  +    +GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F+S  GE+ + +                               G  A+ LGA    G   +        +KMRGLP+ +   ++  +F  YR+ P+G+++ +GA  RPTGEA+V F + ++A  A E  ++  + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLERNRQHIGSRYIEVFKGHPADMQGAM-RMAGRGSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMER-HRNNIGSRYIELFRATKSEMIVAT 363          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: EFJ20270.1 (hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii])

HSP 1 Score: 166.8 bits (421), Expect = 2.600e-37
Identity = 102/344 (29.65%), Postives = 170/344 (49.42%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGA--GGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRI-------------------------------GAAAVTLGAKDDVGYAGV--------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++ATE D+ +FF+G  +   G+ +  +  GR +GQAYV F TA  A  +L+ +++ IG R+I++F    A+M  A+  M G G  GA                                + CT  D+  FF  +    +GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F+S  GE+ + +                               G  A+ LGA    G   +        +KMRGLP+ +   ++  +F  YR+ P+G+++ +GA  RPTGEA+V F + ++A  A E  ++  + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLERNRQHIGSRYIEVFKGHPADMQGAM-RMAGRGSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMER-HRNNIGSRYIELFRATKSEMIVAT 363          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_024539614.1 (heterogeneous nuclear ribonucleoprotein H3 isoform X2 [Selaginella moellendorffii] >XP_024545567.1 heterogeneous nuclear ribonucleoprotein H3 isoform X2 [Selaginella moellendorffii] >XP_024545568.1 heterogeneous nuclear ribonucleoprotein H3 isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 166.8 bits (421), Expect = 2.600e-37
Identity = 102/344 (29.65%), Postives = 170/344 (49.42%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGA--GGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRI-------------------------------GAAAVTLGAKDDVGYAGV--------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++ATE D+ +FF+G  +   G+ +  +  GR +GQAYV F TA  A  +L+ +++ IG R+I++F    A+M  A+  M G G  GA                                + CT  D+  FF  +    +GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F+S  GE+ + +                               G  A+ LGA    G   +        +KMRGLP+ +   ++  +F  YR+ P+G+++ +GA  RPTGEA+V F + ++A  A E  ++  + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLERNRQHIGSRYIEVFKGHPADMQGAM-RMAGRGSSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQLHREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYGMQGVGALNLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATDRPTGEAFVEFISSKEAQRAMER-HRNNIGSRYIELFRATKSEMIVAT 363          
The following BLAST results are available for this feature:
BLAST of NO14G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_008334430.12.400e-3823.91PREDICTED: uncharacterized protein LOC103397816 [C... [more]
GAQ85369.17.000e-3829.17hypothetical protein KFL_002320030 [Klebsormidium ... [more]
XP_018574155.17.000e-3829.92heterogeneous nuclear ribonucleoprotein H isoform ... [more]
XP_010673643.11.600e-3733.88PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
XP_024388702.11.600e-3730.71epithelial splicing regulatory protein 2-like isof... [more]
XP_024388703.11.600e-3730.71epithelial splicing regulatory protein 1-like isof... [more]
CBY09778.12.000e-3727.91unnamed protein product [Oikopleura dioica][more]
EFJ14378.12.600e-3729.65hypothetical protein SELMODRAFT_446014 [Selaginell... [more]
EFJ20270.12.600e-3729.65hypothetical protein SELMODRAFT_443985 [Selaginell... [more]
XP_024539614.12.600e-3729.65heterogeneous nuclear ribonucleoprotein H3 isoform... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002498NSK002498Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02750.1NO14G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630611gene_5855Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100175g2gene5941Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02750.1NO14G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02750 ID=NO14G02750|Name=NO14G02750|organism=Nannochloropsis oceanica|type=gene|length=2997bp
CGAAGAACTACGCTCTTTGTAGATGGTCTGATGTTTGGACGGACTGAAAA
AGCACCCACGTCGTAGCAGTGACATCAGGATACGTTTGGCGGCTTTAATA
TTGGTCGGTTAAGTGTGTGGTGCCGGTCGCAGTAAATGTCTTTGTCTTGA
GGCTCTCATGCCTCCCCCAGCCCAAGCAGCACTATTTGTTCCTCGTTCTC
ACCACCTGTCCTTCCACCCAAACCATTCCATGAAACACAGGGCTACGAAG
GACCCTCTGTGGAGAGTGTAGGTATCAATCTGCACACATCCCTGTAATCA
AATGGCCGCCGACACGTTGTCCGAGGACGCACAGgtaatgaaagagacgg
tcttcccacgcgtcatccatcaggatattctacttccaaagaccgccgca
acctgccctacatgtgctcatcttgaacccctcacccaccccctctcact
cagGGAGAGAGTACGAAGAAGCGTACTCGCGAGCAAGAACAGGATGAGCA
ACAACAGAAAGCACAGCACGAGAATGGGGATAGCACCGAAGCAGGGGCAG
CGGCTACAACTACCGTCGAGGAGCCTGTAGACGGCACGGCGGCAGATACA
GGCGCTGAAGAAAGCAGCACTAAGAAGGTCAAGGTTGACACCGGCAGTGC
AGAGACTGGTGCAGAGGCGGGAGGGGAAACAACCGAGGTGTTGGTGGGAC
CGGGCACTTTGATTCTTCGTTTGTCAGGGTTGCCCTGGAAGTGCTCCGTT
GCGGACGTGCAGAATTTTTTGAAGGAGGCAGGCTTAAGCGAGATTGCGGA
CCCGGCGGCCGATATCAAGATCTTGGATGATTCGAGCGGGGAGGCTTTGC
TTCGTGTAAGCAGCGCGGATGAGGAGGCCGCAGCGTTAAAAGTAAAGGTG
GGACGCTTGGGGAAGCGCTACGTGGAGGTGGCCAGTGCAACGGAAGAGGC
ATTTGCGGCCGCCCCTGCCACATCAGAAGAAGCGATGAACGCACCAGCAA
CAGTGGTGCTAGAGTCTGCCTCTGAAGCTGCTGCGGGGGCGGGAGACGCG
GCGGCTACGGACGCGACTTCGTTGGCAGAGGCGGAGTCGACGATGCTGCA
GGGGGTGGTGCGTCTGCGGGGAATGCCCTACAATGCGACGGAACAGGATG
TCCTGAAATTCTTCCAGGGCTTTGGAGTTACAGAGGGGGGAGTGCACATG
CACCATGATCATACAGGTCGTCCCTCTGGGCAGGCATACGTTGTGTTCGA
GACGGCGGCCGAGGCCCAACATGCGTTGAAGCTGGACAAGGAAAAGATTG
GGGAGCGATGGATTGATCTCTTCTTGTCGTCCAAAGCGGAAATGTTTCAT
GCGCTTCCCACGATGCGGGGGTATGGAGGGCCTGGGGCGGGAGGAGGAGG
GGCAGCGATTCGGTCGTCGGGCCCCAAGGGCGTGAGCATCGGAGGCATTA
CCCATGTGATTAGGGTACGGGGCTTGCCCTTTGATTGCACGCGTATGGAC
TTGCAGCATTTTTTTGCCTCAGTGGGGCCGACGGCGAACGGTATTTTTTT
CGCCAACCGGATGGACGGACGCTCAAGCGGAGAGGCGTTTGTGGTTCTAC
ACAGCCATGATGCAGTACGGCAGGCCTTGATGCAAGACAAACAGAAAATG
GGGTCGCGCTGGCTGGATATTTTCGAGTCTCATCCGGGGGAGCTGTTTTC
CCGGATAGGGGCCGCGGCGGTGACTCTGGGGGCGAAGGACGACGTGGGTT
ACGCTGGTGTGTTGAAAATGCGAGGCCTGCCGTTTCAGACAACGGTTCCT
GATGTCGCCACTTGGTTCGGTGCCTACCGCGTAGCCCCTCACGGGGTCTT
TATCACCATGGGCGCGGACGGTCGACCGACAGGGGAGGCATACGTGATTT
TCGAGACCCCCGAAGACGCAGTGGCGGCGCGCGAGGCGCTCAATAAACAG
ACGATGAACAACCGTTGGATCGATTTGTACCTGGCGAGCAAGGGAGATGT
GTACACGGCCACGGTCCACTCCCCGATCATTGGGCAGGCGCATGGTGGGT
GCCCTGTGTATGCCAACACGCCCATGACCTGCGCGCGGCTCCGGGGCGTC
CCAAGCACGGTGTCGGAGGAGGAGCTATTTCGATTCTTCCAGGGGTTGCA
AGTGATTGGCCTGTACATCTGTAGGGATACGTCGGGGAGGGCGACGGGTG
AGGCATACGCAGAATTTGGATCCCTGGATGATTGCCAGCAGGCTATGAGT
CGTAACCGCGACTACATGCCGGGGGGAGGAGTGGGTGATCGCCCGATCGA
GGTGACGGCGGCAAGCAAGGAGGAGGTGTTGCAATTGATTGAGTTGGAGA
AGACCGGCGGTGTGGCGACCACGACGCCGGCGGCAGGCGCAGGTGCAGCG
GGTGGGTATGGCGCTGGGGCGGGAGGGAGCTCATATTCGAGTGGCCGGCC
GGCGGGTGGGTACGGTGGTAGTGCTTACTCCTCCGGGTCATCGTATGGCT
CGGGAGGAGGGGGAGGGTATGGATCCGGTGGATATGGGGGGTCATCCTAC
GGAGGCTCGTCAGGAGGATATGGACATTATGGTGGTGGTGGCTACGGCCA
ACAGCAGGGCGGGAGTGGGGGGTATTACCAAGGTGGGGGTGGCTATGGGT
CATCGGGAGGAGGGGGTTACTCCTCCGGCGGTGGGTACGGACGCTATTGA
AGGAGCTGCAGGGTTGCGCGTGCTCCTCTGAGGAAGTGTGTGTAGGAGGA
GGAGGAGGAGGTCCGTGCACTTTGTGTGGGGTGCGAGTGGTGTCTATGTT
AGGGGCTACCTTAACTATTGTGTGAGTGTGTGTGTCGTGACGTGTTCGCC
TGTCTGAGTTCCTAAACAAAACGGAGAAGGAGCGAACCAATAACAGCAGT
GAAGTGACATAATCGAGAAAAAACAAAAAGGAAAAATAAGTGCCAAGACA
AAAACGATGAAGACAAAAGAAGAAATGCAAAGGATCACGCTTCATTT
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protein sequence of NO14G02750.1

>NO14G02750.1-protein ID=NO14G02750.1-protein|Name=NO14G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MAADTLSEDAQGESTKKRTREQEQDEQQQKAQHENGDSTEAGAAATTTVE
EPVDGTAADTGAEESSTKKVKVDTGSAETGAEAGGETTEVLVGPGTLILR
LSGLPWKCSVADVQNFLKEAGLSEIADPAADIKILDDSSGEALLRVSSAD
EEAAALKVKVGRLGKRYVEVASATEEAFAAAPATSEEAMNAPATVVLESA
SEAAAGAGDAAATDATSLAEAESTMLQGVVRLRGMPYNATEQDVLKFFQG
FGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDL
FLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVR
GLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVR
QALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKM
RGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDA
VAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANT
PMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFG
SLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVAT
TTPAAGAGAAGGYGAGAGGSSYSSGRPAGGYGGSAYSSGSSYGSGGGGGY
GSGGYGGSSYGGSSGGYGHYGGGGYGQQQGGSGGYYQGGGGYGSSGGGGY
SSGGGYGRY*
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Synonyms
Publications