NO14G02750, NO14G02750 (gene) Nannochloropsis oceanica

Overview
NameNO14G02750
Unique NameNO14G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2997
Alignment locationchr14:803812..806808 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:803812..806808 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_005854630.1 (rna binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU21728.1 rna binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 797.0 bits (2057), Expect = 5.200e-227
Identity = 411/548 (75.00%), Postives = 435/548 (79.38%), Query Frame = 0
Query:   85 GETTEVLVGPGTLILRLSGLPWKCSVADVQNFLKEAGLSEIADPAADIKILDDSSGEALLRVSSADEEXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPATSEEAMNAPATVVLESASEAAAGAGDAAATDATSLAEAESTMLQGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAAS 633
            GET EV V PGTLILRLSGLPWKCSVADVQNFLK  G+S   DPAADIKILDDSSGEAL+RV SA+EE                           A PATSEEAMNAPATVV ++A+ A   AGD  A +A+SL   ES+  QGVVR+RG+PY+ATE+D+L FF GFGV EGGVHMH+DH GR SGQAYVVFET  EAQHALKLDKEKIGERWIDLFLSSK EM HA                                                   HFFASVGPTANGIFF +RMDGRSSGEAFVVLHS +AVRQALMQDKQKMGSRWLDIFESHPGELFSR+GAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFG+YRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYT+TVHSPI+GQAHGGCPVYANTPMTCARLRGVPSTV+EEELFRFF GLQVIGLYICRD+SGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAA+
Sbjct:   77 GETPEVFVAPGTLILRLSGLPWKCSVADVQNFLKHIGVSTRPDPAADIKILDDSSGEALVRVGSAEEEETALKLKVGRLGKRFVDIGSTTEEAFEATPATSEEAMNAPATVVPDAAT-ATGEAGDGTAGEASSLTVPESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFETVPEAQHALKLDKEKIGERWIDLFLSSKPEMLHA---------------------------------------------------HFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAAA 572          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: EWM24532.1 (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 636.3 bits (1640), Expect = 1.200e-178
Identity = 309/327 (94.50%), Postives = 318/327 (97.25%), Query Frame = 0
Query:  325 GGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVATT 652
            GGG  IR  GPKGVSIGGI+HVIRVRGLPFDCTRMDLQHFFASVGPTANGIFF +RMDGRSSGEAFVVLHS +AVRQALMQDKQKMGSRWLDIFESHPGELFSR+GAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFG+YRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYT+TVHSPI+GQAHGGCPVYANTPMTCARLRGVPSTV+EEELFRFF GLQVIGLYICRD+SGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGV  T
Sbjct:    2 GGGGGIR-PGPKGVSIGGISHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVPPT 327          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_005854740.1 (rna binding protein [Nannochloropsis gaditana CCMP526] >EKU21618.1 rna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 509.6 bits (1311), Expect = 1.700e-140
Identity = 245/264 (92.80%), Postives = 254/264 (96.21%), Query Frame = 0
Query:  359 MDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVG 623
            MDLQHFFASVGPTANGIFF +RMDGRSSGEAFVVLHS +AVRQALMQDKQKMGSRWLDIFESHPGELFSR+GAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFG+YRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYT+TVHSPI+GQAHGGCPVYANTPMTCARLRGVPSTV+EEELFRFF GLQVIGLYICRD+SGRATGEAYAEFGSLDDCQQAMSR+  Y    G G
Sbjct:    1 MDLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMSRS-SYGGSSGYG 263          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: CBJ25569.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 393.7 bits (1010), Expect = 1.300e-105
Identity = 191/414 (46.14%), Postives = 277/414 (66.91%), Query Frame = 0
Query:  227 QGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLI 641
            +GVVR+RG+P++A E D+  FF G  + + G+H+  +  GRPSG+AYVVFET   A+ ALK DK+KIGERWID+F ++K E++    +M G GG     GG +  ++          T V+R+RGLPF+ T+  ++ FF  +    + IF   R DG++SGEAFV+  +     +AL++DK+K+G RW+D+F ++ G L+ R+G   V + AK D  + GVL+MRGLPF + V ++ T+F  Y+V  HGVF+  G D RPTGE+YV+F++ ++A  A +AL+KQ + +RWI+L+ ++KGD+YTATV S ++G   GG  +Y   PMTC +LRG+P  V+E  +F FF+GL VIG +IC+D   R TGE + EF ++DDCQ AMSRNR+ M      DR +EV A SKE+VLQ I
Sbjct:  140 KGVVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEEAAKEALKRDKDKIGERWIDIFEATKGEVY----SMTGGGGKKGDQGGVSFDTTD------SAYTGVVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLKDKEKLGDRWIDLFATNKGALYQRVG-VGVKMAAKPDAEFRGVLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKALDKQKIGDRWIELFRSTKGDLYTATVRSTVLGMERGGA-MYGREPMTCVKLRGLPFNVTENNIFSFFEGLTVIGSFICKDVMARPTGEGFVEFATVDDCQLAMSRNRESMM-----DRYVEVFATSKEDVLQQI 536          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: KOO21150.1 (epithelial splicing regulatory protein 2 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 186.4 bits (472), Expect = 3.200e-43
Identity = 133/429 (31.00%), Postives = 214/429 (49.88%), Query Frame = 0
Query:  208 GDAA--ATDATSLAEAESTMLQG-----VVRLRGMPYNATEQDVLKFFQGFGVT--EGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPT--ANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYA--------GVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREAL--NKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANTPMTC----ARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFGSLDDCQQAMSR 612
            G+AA  AT     A A S +  G     + RLRG+P+N   ++V +F     V      V M H+     +G+A+V   TAA+    L+ + ++IG R++++F S+  E   A    R      A   G                  V+R+RGLPF  +  D+  FF S  PT   + +    + DGRSSG+A+ V  + +A  +AL  DKQK+GSRW+D+F+S+ GEL+S      + LG     G           V+K+RGLP+  T+ ++A +     +   GV +  G +GRP+G AYV   + ED    +EAL  +KQ++  R+ID++  S+ ++          G   GG P  + +  T      +LRG+P  ++E+++  FFQ L V+ + I  + S + +G  Y +F + +D  QA+ R
Sbjct:  664 GEAAEMATGELVAAMAGSVLEMGIEEPHIARLRGLPWNYGIKEVCEFLSNVNVNLQPAAVTMLHN----AAGEAFVTLSTAAQLGEVLQANHQEIGRRYVEIFTSNSEEKQAACERNRATMRDDADYRG------------------VLRMRGLPFSTSPEDILVFFGS-PPTLQLSNVHLMRKADGRSSGDAYAVFDTEEAAVEALQYDKQKLGSRWVDLFQSNKGELYSLTSLGGIMLGQDAQAGSPVAALGDGYWVVKLRGLPWSVTLENIAIFLNGITIPKGGVHLMNGVNGRPSGLAYVELSSEED---QKEALCRDKQSIGGRYIDVFACSQTELQARLAG----GLERGGLPGNSGSSSTADAHFVKLRGLPYQINEQQISAFFQPLFVVAVQIAFNPSRQPSGFGYVQFRTPEDTTQALHR 1062          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: PTQ31954.1 (hypothetical protein MARPO_0105s0060 [Marchantia polymorpha] >PTQ31956.1 hypothetical protein MARPO_0105s0060 [Marchantia polymorpha])

HSP 1 Score: 178.3 bits (451), Expect = 8.800e-41
Identity = 113/353 (32.01%), Postives = 177/353 (50.14%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTM-RGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGE-----------LFSRIGA---------------------------------------AAVTLGAKDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTA 531
            VVRLRG+P++A+E D+ +FF+G  +   GV +  +  GR +GQAYV F +A  A  AL+ +++ IG R+I++F    A+M  AL  + RG G    GGG       G  G      T V+R+RG+P+ CT  D+  FF  +    +GIF     DGR +GEAFV   + +   +A+   ++ MG+R++++F S  GE           +FS +G                                           T+G   D      +KMRGLP+     ++  +F  Y + P+G+ I MGA  RPTGEA+V F +PE+   A E  ++Q + +R+I+L+ A+K ++  A
Sbjct:   22 VVRLRGLPFSASETDIAEFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRGSGTVNGGGGILNTGIPGMSGNPDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVPDGIFLCTHADGRPTGEAFVEFMNEETAARAMQLHREPMGTRYVELFRSTKGEMMTAVQQRMYGMFSGVGGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTIG---DTSEHVCIKMRGLPYNAGQREIMDFFEGYNILPNGIHIVMGATERPTGEAFVEFISPEETQRAMER-HRQNIGSRYIELFRATKSEMMLA 370          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_005707310.1 (RNA-binding protein [Galdieria sulphuraria] >EME30790.1 RNA-binding protein [Galdieria sulphuraria])

HSP 1 Score: 176.4 bits (446), Expect = 3.300e-40
Identity = 136/505 (26.93%), Postives = 230/505 (45.54%), Query Frame = 0
Query:  211 AATDATSLAEAESTMLQGVVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVRGLPFDCTRMDLQHFFASV---GPTAN-GIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGELFSRI-------GAAAV-------TLGA------KDDVGYAGVLKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDV---------YTATVHSPIIGQAHGGCPVYAN--------------------------------TPMTCARLRGVPSTVSEEELFRFFQGLQVI--GLYICRDTSGRATGEAYAEFGSLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQL--IELEKTG 647
            +A +A+ +A    T    ++RLRG+P++AT++DVL F +G  V    VH   +  G+P G+A+V   +  +   AL+L ++ +G R+I++F S+  EM   L    G     A         S    +       +IR+RGLPF  +   +  FF  +   G  +N GI      DG   GEAFV   S DA+ +AL + KQ MG R++++F S   E+ + I         AA+       ++G         D      L++RGLPF TTV D+ T+F  YR+ P G++       RP GEA+V F + ++   A +  +K  M +R+++L+ AS+ +V          T T  +  I  +      ++N                                 P    R+RG+P   +  ++  FF    +    + +  D  GR +GEA+  FG+ ++ + A+S+    +    +G R IE+   ++++ + L  + LE  G
Sbjct:  240 SAIEASPVAAGVPT--GSIIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQGKPRGEAFVQLLSVDDVNRALELHRQVLGHRYIEVFKSTPQEMSTVLSRQNGRSTSLAPFSRTTY--SNVSSIDDSKPFFIIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHIVQNQDGHPIGEAFVEFASEDALNKALQRHKQMMGKRYIELFRSSLMEMLNTIERHGGPVARAAIEATVCENSVGTSSRSVLNSDASTCSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRPKGEAFVQFSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALLGSNLCSTITSAASSIANSSSAKSTFSNPNTKSNELLTWESVGRGWDASSWKSNIPKSHIIPNRTVRMRGLPFRATISDIQFFFSDFHITESDVVLGFDKMGRPSGEAWVTFGTEEEARNAVSQ----LQHAHIGKRYIELFLCTQDKSVSLGSVSLEGKG 736          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_024381674.1 (heterogeneous nuclear ribonucleoprotein F-like isoform X1 [Physcomitrella patens] >XP_024381675.1 heterogeneous nuclear ribonucleoprotein F-like isoform X1 [Physcomitrella patens] >PNR50956.1 hypothetical protein PHYPA_010142 [Physcomitrella patens])

HSP 1 Score: 174.1 bits (440), Expect = 1.700e-39
Identity = 113/361 (31.30%), Postives = 175/361 (48.48%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGG------------ITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL-----------------FSRIG---------------------AAAVTLGAKDDVGYAGV--------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++A+E D+  FF+G  +   GV +  +  GR +GQAYV F TA  A  AL+ +++ IG R+I++F    A+M  AL  +      G G G                             T V+R+RG+P+ CT  D+  FF  +   A+GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F S  GE+                 FS+ G                     AA    G     G  G+        +KMRGLP+     ++  +F  Y + P+G+ I MGA  RPTGEA+V F + ++A  A E  ++Q + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMV------GRGSGTVTXXXXXXXXXXXXXXXXXXXXNPDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQLHREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMXXXXXXXXXXXXNLAAVQAAGLGSMTGLQGLSDTSEHVCIKMRGLPYNAGQREIMDFFEGYNILPNGIHIVMGATDRPTGEAFVEFISSDEAQRAMER-HRQNIGSRYIELFRATKSEMLLAT 375          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: PNR45760.1 (hypothetical protein PHYPA_015531 [Physcomitrella patens])

HSP 1 Score: 171.0 bits (432), Expect = 1.400e-38
Identity = 112/355 (31.55%), Postives = 175/355 (49.30%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTM-RGYGGPGAGGGGAAIRSSGPKGVSIGG-----ITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL-----------------FSRIGAAAV--TLGAKDDVGYAGV---------------------------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++ATE D+  FF+G  +   GV +  +  GR +GQAYV F +A  A  AL+ +++ IG R+I++F    A+M  AL  + RG G                             T V+R+RG+P+ CT  D+  FF  +   A+GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F S  GE+                 FS+ G   +   +GA    G  G+                           +KMRGLP+     ++  +F  Y   P+G+ I MGA  RPTGEA+V F + ++A  A E  ++Q + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVXXXXXXXXXXXXXXXXXXXXXXXDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTVPQGLSDTSEHVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRAMER-HRQNIGSRYIELFRATKSEMLLAT 375          
BLAST of NO14G02750 vs. NCBI_GenBank
Match: XP_024388704.1 (heterogeneous nuclear ribonucleoprotein F-like isoform X3 [Physcomitrella patens] >XP_024388705.1 heterogeneous nuclear ribonucleoprotein F-like isoform X3 [Physcomitrella patens] >XP_024388706.1 heterogeneous nuclear ribonucleoprotein F-like isoform X3 [Physcomitrella patens] >XP_024388707.1 heterogeneous nuclear ribonucleoprotein F-like isoform X3 [Physcomitrella patens] >XP_024388708.1 heterogeneous nuclear ribonucleoprotein F-like isoform X3 [Physcomitrella patens])

HSP 1 Score: 171.0 bits (432), Expect = 1.400e-38
Identity = 112/355 (31.55%), Postives = 175/355 (49.30%), Query Frame = 0
Query:  229 VVRLRGMPYNATEQDVLKFFQGFGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDLFLSSKAEMFHALPTM-RGYGGPGAGGGGAAIRSSGPKGVSIGG-----ITHVIRVRGLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVRQALMQDKQKMGSRWLDIFESHPGEL-----------------FSRIGAAAV--TLGAKDDVGYAGV---------------------------LKMRGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLASKGDVYTAT 532
            VVRLRG+P++ATE D+  FF+G  +   GV +  +  GR +GQAYV F +A  A  AL+ +++ IG R+I++F    A+M  AL  + RG G                             T V+R+RG+P+ CT  D+  FF  +   A+GIF     DGR +GEAFV   + +   +A+   ++ MGSR++++F S  GE+                 FS+ G   +   +GA    G  G+                           +KMRGLP+     ++  +F  Y   P+G+ I MGA  RPTGEA+V F + ++A  A E  ++Q + +R+I+L+ A+K ++  AT
Sbjct:   22 VVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALERNRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVXXXXXXXXXXXXXXXXXXXXXXXDMRYTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQLHREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTGMNLAAVQAAGLGSMTVPQGLSDTSEHVCIKMRGLPYNAGQREIMDFFEGYSFLPNGIHIVMGATDRPTGEAFVEFMSSDEAQRAMER-HRQNIGSRYIELFRATKSEMLLAT 375          
The following BLAST results are available for this feature:
BLAST of NO14G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854630.15.200e-22775.00rna binding protein, partial [Nannochloropsis gadi... [more]
EWM24532.11.200e-17894.50RNA binding protein [Nannochloropsis gaditana][more]
XP_005854740.11.700e-14092.80rna binding protein [Nannochloropsis gaditana CCMP... [more]
CBJ25569.11.300e-10546.14conserved unknown protein [Ectocarpus siliculosus][more]
KOO21150.13.200e-4331.00epithelial splicing regulatory protein 2 [Chrysoch... [more]
PTQ31954.18.800e-4132.01hypothetical protein MARPO_0105s0060 [Marchantia p... [more]
XP_005707310.13.300e-4026.93RNA-binding protein [Galdieria sulphuraria] >EME30... [more]
XP_024381674.11.700e-3931.30heterogeneous nuclear ribonucleoprotein F-like iso... [more]
PNR45760.11.400e-3831.55hypothetical protein PHYPA_015531 [Physcomitrella ... [more]
XP_024388704.11.400e-3831.55heterogeneous nuclear ribonucleoprotein F-like iso... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002498NSK002498Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02750.1NO14G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630611gene_5855Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100175g2gene5941Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02750.1NO14G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02750 ID=NO14G02750|Name=NO14G02750|organism=Nannochloropsis oceanica|type=gene|length=2997bp
CGAAGAACTACGCTCTTTGTAGATGGTCTGATGTTTGGACGGACTGAAAA
AGCACCCACGTCGTAGCAGTGACATCAGGATACGTTTGGCGGCTTTAATA
TTGGTCGGTTAAGTGTGTGGTGCCGGTCGCAGTAAATGTCTTTGTCTTGA
GGCTCTCATGCCTCCCCCAGCCCAAGCAGCACTATTTGTTCCTCGTTCTC
ACCACCTGTCCTTCCACCCAAACCATTCCATGAAACACAGGGCTACGAAG
GACCCTCTGTGGAGAGTGTAGGTATCAATCTGCACACATCCCTGTAATCA
AATGGCCGCCGACACGTTGTCCGAGGACGCACAGgtaatgaaagagacgg
tcttcccacgcgtcatccatcaggatattctacttccaaagaccgccgca
acctgccctacatgtgctcatcttgaacccctcacccaccccctctcact
cagGGAGAGAGTACGAAGAAGCGTACTCGCGAGCAAGAACAGGATGAGCA
ACAACAGAAAGCACAGCACGAGAATGGGGATAGCACCGAAGCAGGGGCAG
CGGCTACAACTACCGTCGAGGAGCCTGTAGACGGCACGGCGGCAGATACA
GGCGCTGAAGAAAGCAGCACTAAGAAGGTCAAGGTTGACACCGGCAGTGC
AGAGACTGGTGCAGAGGCGGGAGGGGAAACAACCGAGGTGTTGGTGGGAC
CGGGCACTTTGATTCTTCGTTTGTCAGGGTTGCCCTGGAAGTGCTCCGTT
GCGGACGTGCAGAATTTTTTGAAGGAGGCAGGCTTAAGCGAGATTGCGGA
CCCGGCGGCCGATATCAAGATCTTGGATGATTCGAGCGGGGAGGCTTTGC
TTCGTGTAAGCAGCGCGGATGAGGAGGCCGCAGCGTTAAAAGTAAAGGTG
GGACGCTTGGGGAAGCGCTACGTGGAGGTGGCCAGTGCAACGGAAGAGGC
ATTTGCGGCCGCCCCTGCCACATCAGAAGAAGCGATGAACGCACCAGCAA
CAGTGGTGCTAGAGTCTGCCTCTGAAGCTGCTGCGGGGGCGGGAGACGCG
GCGGCTACGGACGCGACTTCGTTGGCAGAGGCGGAGTCGACGATGCTGCA
GGGGGTGGTGCGTCTGCGGGGAATGCCCTACAATGCGACGGAACAGGATG
TCCTGAAATTCTTCCAGGGCTTTGGAGTTACAGAGGGGGGAGTGCACATG
CACCATGATCATACAGGTCGTCCCTCTGGGCAGGCATACGTTGTGTTCGA
GACGGCGGCCGAGGCCCAACATGCGTTGAAGCTGGACAAGGAAAAGATTG
GGGAGCGATGGATTGATCTCTTCTTGTCGTCCAAAGCGGAAATGTTTCAT
GCGCTTCCCACGATGCGGGGGTATGGAGGGCCTGGGGCGGGAGGAGGAGG
GGCAGCGATTCGGTCGTCGGGCCCCAAGGGCGTGAGCATCGGAGGCATTA
CCCATGTGATTAGGGTACGGGGCTTGCCCTTTGATTGCACGCGTATGGAC
TTGCAGCATTTTTTTGCCTCAGTGGGGCCGACGGCGAACGGTATTTTTTT
CGCCAACCGGATGGACGGACGCTCAAGCGGAGAGGCGTTTGTGGTTCTAC
ACAGCCATGATGCAGTACGGCAGGCCTTGATGCAAGACAAACAGAAAATG
GGGTCGCGCTGGCTGGATATTTTCGAGTCTCATCCGGGGGAGCTGTTTTC
CCGGATAGGGGCCGCGGCGGTGACTCTGGGGGCGAAGGACGACGTGGGTT
ACGCTGGTGTGTTGAAAATGCGAGGCCTGCCGTTTCAGACAACGGTTCCT
GATGTCGCCACTTGGTTCGGTGCCTACCGCGTAGCCCCTCACGGGGTCTT
TATCACCATGGGCGCGGACGGTCGACCGACAGGGGAGGCATACGTGATTT
TCGAGACCCCCGAAGACGCAGTGGCGGCGCGCGAGGCGCTCAATAAACAG
ACGATGAACAACCGTTGGATCGATTTGTACCTGGCGAGCAAGGGAGATGT
GTACACGGCCACGGTCCACTCCCCGATCATTGGGCAGGCGCATGGTGGGT
GCCCTGTGTATGCCAACACGCCCATGACCTGCGCGCGGCTCCGGGGCGTC
CCAAGCACGGTGTCGGAGGAGGAGCTATTTCGATTCTTCCAGGGGTTGCA
AGTGATTGGCCTGTACATCTGTAGGGATACGTCGGGGAGGGCGACGGGTG
AGGCATACGCAGAATTTGGATCCCTGGATGATTGCCAGCAGGCTATGAGT
CGTAACCGCGACTACATGCCGGGGGGAGGAGTGGGTGATCGCCCGATCGA
GGTGACGGCGGCAAGCAAGGAGGAGGTGTTGCAATTGATTGAGTTGGAGA
AGACCGGCGGTGTGGCGACCACGACGCCGGCGGCAGGCGCAGGTGCAGCG
GGTGGGTATGGCGCTGGGGCGGGAGGGAGCTCATATTCGAGTGGCCGGCC
GGCGGGTGGGTACGGTGGTAGTGCTTACTCCTCCGGGTCATCGTATGGCT
CGGGAGGAGGGGGAGGGTATGGATCCGGTGGATATGGGGGGTCATCCTAC
GGAGGCTCGTCAGGAGGATATGGACATTATGGTGGTGGTGGCTACGGCCA
ACAGCAGGGCGGGAGTGGGGGGTATTACCAAGGTGGGGGTGGCTATGGGT
CATCGGGAGGAGGGGGTTACTCCTCCGGCGGTGGGTACGGACGCTATTGA
AGGAGCTGCAGGGTTGCGCGTGCTCCTCTGAGGAAGTGTGTGTAGGAGGA
GGAGGAGGAGGTCCGTGCACTTTGTGTGGGGTGCGAGTGGTGTCTATGTT
AGGGGCTACCTTAACTATTGTGTGAGTGTGTGTGTCGTGACGTGTTCGCC
TGTCTGAGTTCCTAAACAAAACGGAGAAGGAGCGAACCAATAACAGCAGT
GAAGTGACATAATCGAGAAAAAACAAAAAGGAAAAATAAGTGCCAAGACA
AAAACGATGAAGACAAAAGAAGAAATGCAAAGGATCACGCTTCATTT
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protein sequence of NO14G02750.1

>NO14G02750.1-protein ID=NO14G02750.1-protein|Name=NO14G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MAADTLSEDAQGESTKKRTREQEQDEQQQKAQHENGDSTEAGAAATTTVE
EPVDGTAADTGAEESSTKKVKVDTGSAETGAEAGGETTEVLVGPGTLILR
LSGLPWKCSVADVQNFLKEAGLSEIADPAADIKILDDSSGEALLRVSSAD
EEAAALKVKVGRLGKRYVEVASATEEAFAAAPATSEEAMNAPATVVLESA
SEAAAGAGDAAATDATSLAEAESTMLQGVVRLRGMPYNATEQDVLKFFQG
FGVTEGGVHMHHDHTGRPSGQAYVVFETAAEAQHALKLDKEKIGERWIDL
FLSSKAEMFHALPTMRGYGGPGAGGGGAAIRSSGPKGVSIGGITHVIRVR
GLPFDCTRMDLQHFFASVGPTANGIFFANRMDGRSSGEAFVVLHSHDAVR
QALMQDKQKMGSRWLDIFESHPGELFSRIGAAAVTLGAKDDVGYAGVLKM
RGLPFQTTVPDVATWFGAYRVAPHGVFITMGADGRPTGEAYVIFETPEDA
VAAREALNKQTMNNRWIDLYLASKGDVYTATVHSPIIGQAHGGCPVYANT
PMTCARLRGVPSTVSEEELFRFFQGLQVIGLYICRDTSGRATGEAYAEFG
SLDDCQQAMSRNRDYMPGGGVGDRPIEVTAASKEEVLQLIELEKTGGVAT
TTPAAGAGAAGGYGAGAGGSSYSSGRPAGGYGGSAYSSGSSYGSGGGGGY
GSGGYGGSSYGGSSGGYGHYGGGGYGQQQGGSGGYYQGGGGYGSSGGGGY
SSGGGYGRY*
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Synonyms
Publications