NO14G02710, NO14G02710 (gene) Nannochloropsis oceanica

Overview
NameNO14G02710
Unique NameNO14G02710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length522
Alignment locationchr14:797362..797883 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:797362..797883 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G02710 vs. NCBI_GenBank
Match: EWM24543.1 (hypothetical protein Naga_100260g3 [Nannochloropsis gaditana])

HSP 1 Score: 113.6 bits (283), Expect = 6.100e-22
Identity = 71/141 (50.35%), Postives = 97/141 (68.79%), Query Frame = 0 
Query:   15 PSSAATIN--SILDAYDASAQYLEAQETLGMQLKKAFLLLARARMRMGAGGMMGSDFCREYLGATRRVKKNKVVTIGVADKGNHKDNEDKGEDDDTPPTKLEDLLLIMAGGLAPPELREAQQGFIQALESVMMLSTAAEVI 154
            P+  AT++   +L AYDAS  YLEAQE L + LK+AFLL++RARMR  +GG++ S F RE +GA RRV   ++V    A  G+H    D G   D PPT++EDLL+I+AG L  PE+REAQ+ F++AL+ VM L+ AA+ I
Sbjct:    9 PAHTATLSPERVLAAYDASGDYLEAQEKLRVYLKRAFLLVSRARMRPTSGGVLESSFIREDIGAARRVHGERLV---FAKCGSHP--SDVG-GVDPPPTRMEDLLVILAGALPSPEVREAQKDFVKALDCVMDLAVAAKAI 143
The following BLAST results are available for this feature:
BLAST of NO14G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24543.16.100e-2250.35hypothetical protein Naga_100260g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002494NSK002494Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02710.1NO14G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100260g3gene5937Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02710.1NO14G02710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02710 ID=NO14G02710|Name=NO14G02710|organism=Nannochloropsis oceanica|type=gene|length=522bp
ATGGCCGACAACACTATTAAGACGAGCTCCTTCCCTCGGCCTCCCTCCTC
CGCCGCCACTATCAATAGTATTCTGGACGCCTACGATGCGTCAGCGCAGT
ACCTCGAGGCCCAAGAGACCCTGGGCATGCAGCTCAAAAAGGCCTTTCTC
CTACTCGCCCGAGCACGGATGCGGATGGGAGCCGGAGGCATGATGGGTAG
TGACTTTTGCCGTGAATACTTGGGAGCAACACGGCGCGTTAAGAAGAACA
AGGTTGTGACCATCGGGGTAGCAGACAAAGGAAATCACAAGGACAACGAG
GACAAGGGCGAAGATGATGACACCCCCCCAACCAAACTCGAGGATCTACT
TCTGATCATGGCGGGTGGATTAGCGCCTCCAGAGCTGAGAGAAGCGCAGC
AAGGCTTCATCCAGGCATTGGAAAGCGTCATGATGTTGTCGACGGCTGCA
GAAGTAATTCTGACACACGCCCGCGGGTCCGAAGGTGTGACGCACGTGCA
ATCGAGACATAGTGAAAGTTGA
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protein sequence of NO14G02710.1

>NO14G02710.1-protein ID=NO14G02710.1-protein|Name=NO14G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MADNTIKTSSFPRPPSSAATINSILDAYDASAQYLEAQETLGMQLKKAFL
LLARARMRMGAGGMMGSDFCREYLGATRRVKKNKVVTIGVADKGNHKDNE
DKGEDDDTPPTKLEDLLLIMAGGLAPPELREAQQGFIQALESVMMLSTAA
EVILTHARGSEGVTHVQSRHSES*
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Synonyms
Publications