NO14G02560, NO14G02560 (gene) Nannochloropsis oceanica

Overview
NameNO14G02560
Unique NameNO14G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length456
Alignment locationchr14:769397..769852 -

Link to JBrowse

Properties
Property NameValue
DescriptionWd repeat protein 23
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:769397..769852 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR001680WD40_repeat
Homology
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_005855700.1 (wd repeat protein 23, partial [Nannochloropsis gaditana CCMP526] >EKU20660.1 wd repeat protein 23, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 137.9 bits (346), Expect = 2.600e-29
Identity = 69/119 (57.98%), Postives = 82/119 (68.91%), Query Frame = 0
Query:   33 RGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYD-IMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGREDEEE 151
            R RR++HPV DHSI+TW GHR+ RTLIQ  FS E LTGGR+VVTGSA G +F YD +  EG          G A+ +L FH D VRTVA AP  DLM+SAGWDG LGLW +QG+  + E
Sbjct:    1 RQRRRKHPVGDHSIQTWRGHRIARTLIQPAFSPEALTGGRYVVTGSADGRLFAYDTLAAEGEEAGQAGREDGRAVEKLAFHDDVVRTVAFAPQVDLMVSAGWDGSLGLWRFQGQRAKGE 119          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_013410754.1 (DDB1- and CUL4-associated factor 11 isoform X1 [Lingula anatina])

HSP 1 Score: 88.2 bits (217), Expect = 2.400e-14
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   19 DYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGRED 148
            DYR+     P    R ++ +H   D S+ T+ GH V  +LI+A FS    TG R++ TG A GGV VYD++             G  ++RLD H+ CVR V+  P+   +IS  WDG LG W + G ++
Sbjct:  404 DYRW-----PPVPARVKKVKHVEGDSSLMTYRGHSVLHSLIRARFSPAYTTGQRYIYTGCASGGVVVYDVL------------TGKVVSRLDGHRGCVRDVSWHPYEHTIISTSWDGSLGKWTYNGMKN 515          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_013410755.1 (DDB1- and CUL4-associated factor 11 isoform X2 [Lingula anatina])

HSP 1 Score: 88.2 bits (217), Expect = 2.400e-14
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 0
Query:   19 DYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGRED 148
            DYR+     P    R ++ +H   D S+ T+ GH V  +LI+A FS    TG R++ TG A GGV VYD++             G  ++RLD H+ CVR V+  P+   +IS  WDG LG W + G ++
Sbjct:  336 DYRW-----PPVPARVKKVKHVEGDSSLMTYRGHSVLHSLIRARFSPAYTTGQRYIYTGCASGGVVVYDVL------------TGKVVSRLDGHRGCVRDVSWHPYEHTIISTSWDGSLGKWTYNGMKN 447          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: KZV14942.1 (hypothetical protein F511_36229 [Dorcoceras hygrometricum])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 51/141 (36.17%), Postives = 75/141 (53.19%), Query Frame = 0
Query:    8 AEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGREDE 149
            +  RYA   D DYR+   E P    R ++ RHP  D S+ T+ GH V RTLI+  FS    TG +++ TGS  G V++YD++             G  +A+LDFH D VR     P + +++S+ WDG +  W + G+  E
Sbjct:  337 SRRRYA---DWDYRW--MEYP---ERAKKLRHP-DDLSLATYRGHSVLRTLIRCYFSPAYSTGQKYIYTGSTDGSVYIYDLV------------NGDQVAKLDFHDDPVRDCNWHPSYPMIVSSSWDGIIANWEFPGKGQE 456          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_019253489.1 (PREDICTED: LEC14B homolog [Nicotiana attenuata] >XP_019253490.1 PREDICTED: LEC14B homolog [Nicotiana attenuata] >OIS98745.1 lec14b-like protein [Nicotiana attenuata])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 45/128 (35.16%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   17 DVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQG 145
            D DYR+    + +  RR  R      D S+ T+ GH+V RTLI+  FS    TG +F+ TGSA   V++YD++             G  +A+LD+H+D VR     P++ +++S+GWDG +  W + G
Sbjct:  347 DWDYRWMDYPEHVRNRRNPR------DLSLTTYKGHKVLRTLIRCYFSPAHSTGQKFIYTGSADSSVYIYDVV------------SGAQVAKLDYHQDPVRDCNWHPYYPMLVSSGWDGIIANWEFPG 456          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_023720677.1 (DDB1- and CUL4-associated factor 11 isoform X1 [Cryptotermes secundus] >PNF20119.1 DDB1- and CUL4-associated factor 11 [Cryptotermes secundus])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 0
Query:    4 AGRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGR 146
            +G+    +   D   DYR+    Q +  +    +++   D S+ T+ GHRV +TL++  FS E +TG R++ TG A G V +YD++             G   + L  H+ CVR V+  PH   +IS  WDG LG W + G+
Sbjct:  361 SGQNNTRKAVSDQTWDYRW----QKVPKKLSNPKKNLEGDTSVMTYRGHRVLQTLVRCHFSPEFITGQRYIYTGCAAGRVVIYDVL------------TGKVHSVLSGHRACVRDVSWHPHRQELISTSWDGTLGRWTYSGK 486          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_023720678.1 (DDB1- and CUL4-associated factor 11 isoform X2 [Cryptotermes secundus] >PNF20118.1 DDB1- and CUL4-associated factor 11 [Cryptotermes secundus])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 0
Query:    4 AGRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGR 146
            +G+    +   D   DYR+    Q +  +    +++   D S+ T+ GHRV +TL++  FS E +TG R++ TG A G V +YD++             G   + L  H+ CVR V+  PH   +IS  WDG LG W + G+
Sbjct:  327 SGQNNTRKAVSDQTWDYRW----QKVPKKLSNPKKNLEGDTSVMTYRGHRVLQTLVRCHFSPEFITGQRYIYTGCAAGRVVIYDVL------------TGKVHSVLSGHRACVRDVSWHPHRQELISTSWDGTLGRWTYSGK 452          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_023720679.1 (DDB1- and CUL4-associated factor 11 isoform X3 [Cryptotermes secundus])

HSP 1 Score: 83.2 bits (204), Expect = 7.700e-13
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 0
Query:    4 AGRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGR 146
            +G+    +   D   DYR+    Q +  +    +++   D S+ T+ GHRV +TL++  FS E +TG R++ TG A G V +YD++             G   + L  H+ CVR V+  PH   +IS  WDG LG W + G+
Sbjct:  298 SGQNNTRKAVSDQTWDYRW----QKVPKKLSNPKKNLEGDTSVMTYRGHRVLQTLVRCHFSPEFITGQRYIYTGCAAGRVVIYDVL------------TGKVHSVLSGHRACVRDVSWHPHRQELISTSWDGTLGRWTYSGK 423          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_019629598.1 (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X2 [Branchiostoma belcheri])

HSP 1 Score: 82.8 bits (203), Expect = 1.000e-12
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 0
Query:    5 GRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGR 146
            G  A  R   + + DYR+    QP+  R          D S+ T+ GH V  TL++  FS    TG RF+ +G + G V VYD++             G  + +L  HK CVR V+  P+   ++S GWDG LGLW W+ R
Sbjct:  404 GLEASRRAVANQNWDYRW----QPVPKRVRTSSARLAGDTSLMTYRGHGVLHTLVRCRFSPVHTTGQRFIYSGCSTGSVVVYDVL------------TGKIVEKLRGHKACVRDVSWHPYEPKIMSTGWDGVLGLWEWRRR 528          
BLAST of NO14G02560 vs. NCBI_GenBank
Match: XP_019629605.1 (PREDICTED: DDB1- and CUL4-associated factor 11-like isoform X8 [Branchiostoma belcheri])

HSP 1 Score: 82.8 bits (203), Expect = 1.000e-12
Identity = 49/141 (34.75%), Postives = 69/141 (48.94%), Query Frame = 0
Query:    5 GRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWWGHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGXXXXXXXXXGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGR 146
            G  A  R   + + DYR+    QP+  R          D S+ T+ GH V  TL++  FS    TG RF+ +G + G V VYD++             G  + +L  HK CVR V+  P+   ++S GWDG LGLW W+ R
Sbjct:  348 GLEASRRAVANQNWDYRW----QPVPKRVRTSSARLAGDTSLMTYRGHGVLHTLVRCRFSPVHTTGQRFIYSGCSTGSVVVYDVL------------TGKIVEKLRGHKACVRDVSWHPYEPKIMSTGWDGVLGLWEWRRR 472          
The following BLAST results are available for this feature:
BLAST of NO14G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855700.12.600e-2957.98wd repeat protein 23, partial [Nannochloropsis gad... [more]
XP_013410754.12.400e-1437.21DDB1- and CUL4-associated factor 11 isoform X1 [Li... [more]
XP_013410755.12.400e-1437.21DDB1- and CUL4-associated factor 11 isoform X2 [Li... [more]
KZV14942.17.700e-1336.17hypothetical protein F511_36229 [Dorcoceras hygrom... [more]
XP_019253489.17.700e-1335.16PREDICTED: LEC14B homolog [Nicotiana attenuata] >X... [more]
XP_023720677.17.700e-1332.39DDB1- and CUL4-associated factor 11 isoform X1 [Cr... [more]
XP_023720678.17.700e-1332.39DDB1- and CUL4-associated factor 11 isoform X2 [Cr... [more]
XP_023720679.17.700e-1332.39DDB1- and CUL4-associated factor 11 isoform X3 [Cr... [more]
XP_019629598.11.000e-1234.75PREDICTED: DDB1- and CUL4-associated factor 11-lik... [more]
XP_019629605.11.000e-1234.75PREDICTED: DDB1- and CUL4-associated factor 11-lik... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002474NSK002474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02560.1NO14G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528569gene_5839Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02560.1NO14G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02560 ID=NO14G02560|Name=NO14G02560|organism=Nannochloropsis oceanica|type=gene|length=456bp
ATGGTCGAGGCGGGGAGGGGGGCGGAGGAGAGGTATGCGGTGGATGTAGA
TGTGGACTATAGGTTTGACATCGCCGAGCAGCCGTTGGGGGGGAGGAGAG
GGAGGCGGCAGAGGCATCCCGTGAGTGACCATTCAATCAAAACGTGGTGG
GGGCATCGGGTGACGCGGACGTTGATCCAGGCGACGTTTTCGTCGGAAGA
GCTTACGGGGGGTAGGTTTGTAGTGACCGGCAGTGCCGGAGGGGGAGTAT
TTGTATACGATATAATGGGAGAGGGAGCGGGGGAGGGAGAAAGGGAGAGA
GAGGGAGGGTGCGCTCTGGCTAGGTTGGATTTCCATAAGGATTGTGTGCG
AACGGTGGCGTGTGCGCCGCATCATGACTTGATGATCTCAGCGGGATGGG
ACGGGAGACTGGGATTATGGTGCTGGCAGGGGCGAGAGGATGAGGAGGAG
GCGTGA
back to top

protein sequence of NO14G02560.1

>NO14G02560.1-protein ID=NO14G02560.1-protein|Name=NO14G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MVEAGRGAEERYAVDVDVDYRFDIAEQPLGGRRGRRQRHPVSDHSIKTWW
GHRVTRTLIQATFSSEELTGGRFVVTGSAGGGVFVYDIMGEGAGEGERER
EGGCALARLDFHKDCVRTVACAPHHDLMISAGWDGRLGLWCWQGREDEEE
A*
back to top
Synonyms
Publications