NO14G02520, NO14G02520 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02520
Unique Name	NO14G02520
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1532
Alignment location	chr14:761553..763084 -

Link to JBrowse

Properties


Property Name	Value
Description	Protein FRA10AC1 homolog

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:761553..763084 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019129	Folate-sensitive_fs_Fra10Ac1

Homology

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_007894854.1 (PREDICTED: protein FRA10AC1 [Callorhinchus milii])

HSP 1 Score: 141.0 bits (354), Expect = 6.500e-30
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERCKDLLD 155
            TD DV+K N +F W EG++DD  TW  ++AK+Y+DKL KEY +ADLSR+KE K G RWR ++EV+ G GQ+ CG+    C  +EGL S+E+NF Y E GE RN LVK+RVC  C  +L+
Sbjct:  114 TDLDVIKENHRFLWTEGDEDD-LTWEKKLAKKYYDKLFKEYCIADLSRYKENKFGFRWRTDKEVISGKGQFCCGN--KYCDVKEGLKSWEVNFGYIEHGEKRNALVKLRVCPECSSMLN 229

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_015201888.1 (PREDICTED: protein FRA10AC1 [Lepisosteus oculatus])

HSP 1 Score: 141.0 bits (354), Expect = 6.500e-30
Identity = 72/164 (43.90%), Postives = 94/164 (57.32%), Query Frame = 0

Query:    3 RRWGNDEVTERDHRALLRLAYPQHHRTQPQQI-----------------TTDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            + W  +E   R H  +   AY +H +     I                  TD DVL+ N +F WRE ED++  TW   +AK+Y+DKL KEY +ADLSR+KE K G RWRVE EV+ G GQ+ CG+    C  +EGL S+E+NF Y E GE RN LVK+R+C  C
Sbjct:   65 QEWDREEARNRRHHLISMNAYDRHKKFVSDYILYYGGKKEDFKRSTANDKTDVDVLRENHRFLWRE-EDEEDMTWEKELAKKYYDKLFKEYCIADLSRYKENKFGFRWRVETEVISGKGQFFCGN--KRCEKKEGLKSWEVNFAYVEHGEKRNALVKLRLCPEC 225

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_022115112.1 (protein FRA10AC1 homolog isoform X2 [Pieris rapae])

HSP 1 Score: 139.8 bits (351), Expect = 1.500e-29
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERCKDLLD 155
            TD DVL+ N KF W   EDD   TW  ++AK+Y+DKL KEY + DLSR+KE KV LRWR+E+EVV G GQ+ CGS   GC + +GL S+E+NF Y+EG E +N LVK+R+C  C + L+
Sbjct:   41 TDLDVLRENHKFLWE--EDDVADTWEKQLAKKYYDKLFKEYCICDLSRYKENKVALRWRIEKEVVLGKGQFHCGS--KGCNSDQGLKSWEVNFAYREGDEKKNALVKVRLCPECSEKLN 155

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: NP_001086932.1 (fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 L homeolog [Xenopus laevis] >AAH77789.1 MGC80372 protein [Xenopus laevis] >OCT71761.1 hypothetical protein XELAEV_18034739mg [Xenopus laevis])

HSP 1 Score: 139.0 bits (349), Expect = 2.500e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            TD DV++ N +F W E ED+D  TW  ++AK+Y+DKL KEY +ADLSR+KE K G RWRVE+EV+ G GQ++CG+    C  +EGL S+E+NF Y+E GE RN LVK+R+C  C
Sbjct:  108 TDLDVIRENHRFLWEE-EDEDDMTWEKKLAKKYYDKLFKEYCIADLSRYKENKFGFRWRVEKEVIAGKGQFSCGN--KRCDEKEGLKSWEVNFGYEEHGEKRNALVKLRLCPEC 218

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_018616332.1 (PREDICTED: protein FRA10AC1 [Scleropages formosus])

HSP 1 Score: 139.0 bits (349), Expect = 2.500e-29
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 0

Query:    5 WGNDEVTERDHRALLRLAYPQHHRTQPQQI-----------------TTDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            W  +E   R H  +   A+ +H +     I                  TDFDV+K N +F WR+ ED +  TW   +AK+Y+DKL KEY +ADLSR+KE K G RWR+E EVV G GQ+ CG+    C  +EGL S+E+NF Y E GE RN LVK+R+C  C
Sbjct:   65 WDREEARNRRHHLISMNAFERHKKFVSDYILYYGGKLQDFRRSTASDKTDFDVVKDNHRFLWRD-EDQEDMTWEKELAKKYYDKLFKEYCIADLSRYKENKFGFRWRIENEVVSGKGQFFCGN--KRCDKQEGLKSWEVNFAYVEHGEKRNALVKLRLCPEC 223

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: CBN81432.1 (Protein FRA10AC1 [Dicentrarchus labrax])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 65/122 (53.28%), Postives = 83/122 (68.03%), Query Frame = 0

Query:   28 RTQPQQITTDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            +  P +  TD DVL+ N +F WR+ ED+D  TW   +AK+Y+DKL KEY +ADLSR+KE K G RWR E EVV G GQ+ CG+    C  +EGL S+E+NF Y E GE RN LVK+R+C  C
Sbjct:  131 KRSPTKDKTDLDVLRENHRFLWRD-EDEDDMTWEKELAKKYYDKLFKEYCIADLSRYKENKFGFRWRTENEVVSGKGQFQCGN--KRCEKQEGLKSWEVNFAYVEHGEKRNALVKLRLCPEC 249

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: GAQ89210.1 (hypothetical protein KFL_004970070 [Klebsormidium nitens])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 0

Query:   34 ITTDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            + TD D+L+ +++F  R  EDD  ++W AR+AKRY+DKL KEY +ADLSR+KE KVGLRWR E+EVV G GQ+ CG+   G   R GL SYE+NF Y+E GE +N LVK+R+C +C
Sbjct:   57 VKTDSDILRESYRFL-RSDEDDADTSWEARLAKRYYDKLFKEYCIADLSRYKESKVGLRWRTEKEVVAGKGQFICGNKEHG--ERNGLRSYEVNFAYKEAGEEKNALVKLRLCPKC 169

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_015230696.1 (PREDICTED: protein FRA10AC1 [Cyprinodon variegatus])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            TD DVL+ N +F WRE ED+D  TW   +AK+Y+DKL KEY +ADLSR+KE K G RWR E+EVV G GQ+ CG+    C A EGL S+E+NF Y E GE RN LVK+R+C  C
Sbjct:  110 TDLDVLRENHRFLWRE-EDEDDMTWEKEIAKKYYDKLFKEYCIADLSRYKENKFGFRWRTEKEVVSGKGQFQCGN--KLCGAEEGLKSWEVNFAYVEQGEKRNALVKLRLCPEC 220

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_018414189.1 (PREDICTED: protein FRA10AC1 [Nanorana parkeri])

HSP 1 Score: 138.7 bits (348), Expect = 3.200e-29
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            TD DV++ N +F W+E ED++  TW  R+AK+Y+DKL KEY +ADLSR+KE K G RWRVE+EV+ G GQ++CG+    C  +EGL S+E+NF Y E GE RN LVK+R+C  C
Sbjct:  109 TDLDVIQENHRFLWQE-EDEEEMTWEKRLAKKYYDKLFKEYCIADLSRYKENKFGFRWRVEKEVISGKGQFSCGN--KRCDEKEGLKSWEVNFGYLEHGEKRNALVKLRLCPEC 219

[Close]

BLAST of NO14G02520 vs. NCBI_GenBank
Match: XP_782837.1 (PREDICTED: protein FRA10AC1 homolog [Strongylocentrotus purpuratus])

HSP 1 Score: 137.9 bits (346), Expect = 5.500e-29
Identity = 58/114 (50.88%), Postives = 84/114 (73.68%), Query Frame = 0

Query:   36 TDFDVLKRNFKFAWREGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVVDGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERC 150
            TD DV++ N +F W   +++   +WG ++AK+Y+DKL KEY +ADLSR+KE K+ +RWRV++EV +G G +TCG+    C  +EGL ++E+NF Y E GE RN LVK+R+CERC
Sbjct:  102 TDLDVIRENHRFLWDAKDEEQEESWGKKLAKKYWDKLFKEYCIADLSRYKEKKIAMRWRVQKEVTEGKGHFTCGN--KKCAEQEGLRTWEVNFAYMEHGEKRNALVKLRLCERC 213

The following BLAST results are available for this feature:

BLAST of NO14G02520 vs. NCBI_GenBank

BLAST of NO14G02520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_007894854.1	6.500e-30	53.78	PREDICTED: protein FRA10AC1 [Callorhinchus milii]	[more]
XP_015201888.1	6.500e-30	43.90	PREDICTED: protein FRA10AC1 [Lepisosteus oculatus]	[more]
XP_022115112.1	1.500e-29	54.62	protein FRA10AC1 homolog isoform X2 [Pieris rapae]	[more]
NP_001086932.1	2.500e-29	55.26	fragile site, folic acid type, rare, fra(10)(q23.3...	[more]
XP_018616332.1	2.500e-29	43.83	PREDICTED: protein FRA10AC1 [Scleropages formosus]	[more]
CBN81432.1	3.200e-29	53.28	Protein FRA10AC1 [Dicentrarchus labrax]	[more]
GAQ89210.1	3.200e-29	56.03	hypothetical protein KFL_004970070 [Klebsormidium ...	[more]
XP_015230696.1	3.200e-29	57.89	PREDICTED: protein FRA10AC1 [Cyprinodon variegatus...	[more]
XP_018414189.1	3.200e-29	55.26	PREDICTED: protein FRA10AC1 [Nanorana parkeri]	[more]
XP_782837.1	5.500e-29	50.88	PREDICTED: protein FRA10AC1 homolog [Strongylocent...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL138	nonsL138	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR069	ncniR069	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR023	ngnoR023	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002470	NSK002470	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO14G02520.1	NO14G02520.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|38727	gene_5835	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO14G02520.1	NO14G02520.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO14G02520 ID=NO14G02520|Name=NO14G02520|organism=Nannochloropsis oceanica|type=gene|length=1532bp
AATACACCACACGTACAGTTCTGGAAGCAAAGGGGCCTTCAGCAAGGGGG
AGGTGACCATCTGCTACTCATCCTGTAGCCATGAACAGGCGCTGGGGAAA
CGACGAGgtacgtgaggcttgtccctcatttataccttatgacctcctga
ccctccctcactccctccctttatagGTGACCGAGCGAGATCACCGTGCG
CTTCTTCGACTGGCCTACCCGCAGCATCATCGAACACAGCCGCAGCAAAT
CACAACCGATTTCGATGTTCTCAAACGCAATTTTAAGTTTGCCTGGCGCG
AGGGCGAGGACGACGATCGGAGCACGTGGGGCGCTCGGATGGCCAAACGC
TACTTCGACAAGTTACACAAGGAATACGTGCTCGCGGATTTGAGCCGATG
GAAGGAGGGCAAAGTTGGCCTGCGATGGCGGGTGGAGCGAGAGGTCGTGG
ACGGTACAGGTCAATACACGTGTGGGTCCCTCGGGGTAGGATGCCGCGCT
CGAGAGGGGCTGGCAAGCTACGAATTAAACTTTCGCTACCAAGAAGGGGG
AGAGGTGAGGAATGAATTAGTAAAGATAAGAGTGTGTGAGCGGTGTAAGG
ATTTGTTGGATCAGGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAG
GGGAGAAGCAGCAGTGATGCTCGCAGTGAAAGGAGGATGGACAATAGGAG
GAAAGAGGAGGAGGAGGACGCACAGTGGAGGAGGAGGAAAGGAGTTAGTG
GTGGCAGTAGGCAGAAGAGAGATAAAGAGGGTAGGAGTCGGGGTGAAGAT
GCTAGTGCTGGCAACCGTAAGATACAGAAGCAGGGCGAAGGAAAGCCCAC
AGGTGCATCTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTACAACCACCAAAACAGCGATCGACAGCGTA
ACGTCAAAAGCAGCGGCAGTAGACGCAGAAACAGTTGCGGCGGCAGCAGC
AGCAGCAGCAGCAGAAGGGAGGAGAAAGGAGAAAGCGGCGGCGGCTATGC
AAGAGATGGACGACTTGATCCGTGATATCCTCGATGGCAAAACAGGCACA
TAGACGGCGAAACTAAGCGGAAAATGAAGGCAATTGTAAACTTGTACAAG
TCAAGGAAACGGTAAAGAAGGAATTGACAGTTATAGATGGCAAAAGTGAA
CGTGTAGGCTCGAGACCCTCGCGATAATCGGGCTGGGGCTGTAGCTGTTA
TGAAGGAGTGCGTATATGTCTCAATATCCTTCTTCCCATTGGCAATCGGG
CCAAGCAAGCGTGAGACTGAAAGTGCGAGGGAGTGGAGTTTCGCGCTCTG
ACCCTCTGCCAAGTCTAAGCTCCTTTCTGCTTCTTCTTGAGTCGACCTTG
TCCATCGGTAAGAGGCCAGTCTACGACAAGTCGTAGCTCTAATGTGGTAC
ATGCTGGCTTTGCTCTTACTCTTTTTTCAACGAAAAATACACCTTTCAAG
GACGCCTGTAGTTATACCAGCGAAAATGTGGG

protein sequence of NO14G02520.1

>NO14G02520.1-protein ID=NO14G02520.1-protein|Name=NO14G02520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MNRRWGNDEVTERDHRALLRLAYPQHHRTQPQQITTDFDVLKRNFKFAWR
EGEDDDRSTWGARMAKRYFDKLHKEYVLADLSRWKEGKVGLRWRVEREVV
DGTGQYTCGSLGVGCRAREGLASYELNFRYQEGGEVRNELVKIRVCERCK
DLLDQARGGGGGGGGGKGRSSSDARSERRMDNRRKEEEEDAQWRRRKGVS
GGSRQKRDKEGRSRGEDASAGNRKIQKQGEGKPTGASPPPPPPPPHPAAA
AAAAAAATTTKTAIDSVTSKAAAVDAETVAAAAAAAAAEGRRKEKAAAAM
QEMDDLIRDILDGKTGT*

Synonyms

Publications