NO14G02260, NO14G02260 (gene) Nannochloropsis oceanica

Overview
NameNO14G02260
Unique NameNO14G02260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1088
Alignment locationchr14:678391..679478 +

Link to JBrowse

Properties
Property NameValue
DescriptionMethyltransferase type 11
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:678391..679478 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR013216Methyltransf_11
Homology
BLAST of NO14G02260 vs. NCBI_GenBank
Match: EWM24583.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 365.2 bits (936), Expect = 1.600e-97
Identity = 172/227 (75.77%), Postives = 199/227 (87.67%), Query Frame = 0
Query:   10 KEGLVAFDKDHYPDGLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP 237
            KEG V FD+DHYP+GLNANFL  DAE LEAKY+GAKGLFTDPETRDIARNV DI++ALGDL GK+IVDLG+GTGLFL  LDAAVG +GHVYAVEISPGF+ELL+KKKE EGL NT++  G+ T+  LPADL+ D+VLL+DVYHHIEYVQTYM  VR+GMR G +LVLIDFHRIP KIWSHPP+WVLSHVRAGQ+VF+AE+E+AGF  +RE+TL  LQENYF+IF NP
Sbjct:    5 KEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRIPEKIWSHPPEWVLSHVRAGQDVFRAELEQAGFVFQREVTLPKLQENYFMIFTNP 231          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: EWM24584.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 273.5 bits (698), Expect = 6.300e-70
Identity = 132/177 (74.58%), Postives = 153/177 (86.44%), Query Frame = 0
Query:   10 KEGLVAFDKDHYPDGLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKI 187
            KEG V FD+DHYP+GLNANFL  DAE LEAKY+GAKGLFTDPETRDIARNV DI++ALGDL GK+IVDLG+GTGLFL  LDAAVG +GHVYAVEISPGF+ELL+KKKE EGL NT++  G+ T+  LPADL+ D+VLL+DVYHHIEYVQTYM  VR+GMR G +LVLIDFHR+  K+
Sbjct:    5 KEGTVTFDRDHYPEGLNANFLVSDAEALEAKYSGAKGLFTDPETRDIARNVPDILEALGDLKGKQIVDLGSGTGLFLNFLDAAVGPKGHVYAVEISPGFVELLRKKKEDEGLSNTSIVLGNTTNSELPADLKVDMVLLIDVYHHIEYVQTYMTKVREGMRTGAELVLIDFHRVSIKL 181          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: CEM11033.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 216.5 bits (550), Expect = 9.100e-53
Identity = 110/231 (47.62%), Postives = 147/231 (63.64%), Query Frame = 0
Query:   11 EGLVAFDKDHYPDGLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGD----LTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLP--ADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRK--GGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIF 234
            E    F+  HYPDG+NANF+    E L+ KY    GLF DPE RDIA+    I+KAL        G  +VD+GAGTGLFL    A +G +G +YA E+S GF+ LL++  + EGL N    + S T + LP  A   AD+V + DVYHH EY +T+++++   + K   G LV+IDFHRIP KIWS PP+WVL HVRAGQ+ FK EIEE+GFE   ++ +  ++ENY + F
Sbjct:    2 ESPAVFNASHYPDGVNANFVNSTEEQLKEKYGNGSGLFEDPEQRDIAKCKDAILKALRQHCHLSPGCCLVDVGAGTGLFLKDFSAIIGNQGSIYACELSDGFLGLLERLCDEEGLTNVITVKTSDTSLQLPESAKRAADLVFICDVYHHFEYPRTFIRHIADDVIKPDTGLLVVIDFHRIPEKIWSRPPEWVLDHVRAGQDTFKQEIEESGFEYLSDVEVEGMRENYMMTF 232          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: GBG25836.1 (Methyltransferase-like protein 7B [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 179.9 bits (455), Expect = 9.400e-42
Identity = 104/220 (47.27%), Postives = 136/220 (61.82%), Query Frame = 0
Query:   21 YPDGLNANFLEP--DAEGLEAKYAGAKGLFTDPETRDIARNVADIIKAL----GDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKK-KETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIF 234
            +PDG+N+ FL+P  +A+ LE  Y   +G+F +PE RDIA N A+ IKAL    G   G  IVDLGAGTGLFL      VG EG +YA EIS  F ELL++K  + E +++ T    S  D    AD  AD+V + DVYHH+ Y  T M++VR+ ++  GKLV+IDFHR   KIW  P  W   H+RA Q+ F++EI  AGF L  E  +  L ENY +IF
Sbjct:   45 FPDGVNSVFLKPKEEADRLEEVYGKGQGIFENPEGRDIAMN-AEKIKALLAANGLKEGATIVDLGAGTGLFLSSFAHMVGSEGKLYASEISEAFAELLRRKAAQDELVKSVTEIIVSPEDSLSIADGVADVVFICDVYHHLTYPVTVMRHVRRILKPEGKLVMIDFHRDDEKIWRKPKGWAYQHLRADQDTFRSEILSAGFTLVEEPEIDTLTENYIMIF 263          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: PCJ53189.1 (SAM-dependent methyltransferase [Planctomycetes bacterium])

HSP 1 Score: 162.2 bits (409), Expect = 2.000e-36
Identity = 90/213 (42.25%), Postives = 127/213 (59.62%), Query Frame = 0
Query:   24 GLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP 237
            G+N  FLE  AE ++       G+F + E+R+IA     I+ AL    G +I DLGAGTGL+      AVG +G VYAV++SP  I+ L ++   E L   TV   S T+ GL  D   D++ + D YHH EY QT ++++ + +R GG L ++DF RI G   S P  W+++H+RAG++VF+AEIE AGFE   E  +  L ENY L+F  P
Sbjct:   33 GINKPFLEATAEDIQV----FVGIF-EGESREIAAASDGIMAALNIQPGMEIADLGAGTGLYEPLFQKAVGDDGRVYAVDLSPAMIDHLNQRVADENLDRVTVVECSATNCGLEND-SVDLIYICDTYHHFEYPQTSLRSIYRALRSGGTLAIVDFERIEGV--SRP--WIMNHMRAGKDVFRAEIEAAGFEFIEEPMVDGLNENYLLLFRRP 235          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: WP_105351809.1 (methyltransferase domain-containing protein [Blastopirellula marina] >PQO41117.1 SAM-dependent methyltransferase [Blastopirellula marina] >PTL45993.1 methyltransferase domain-containing protein [Blastopirellula marina])

HSP 1 Score: 161.0 bits (406), Expect = 4.500e-36
Identity = 90/210 (42.86%), Postives = 125/210 (59.52%), Query Frame = 0
Query:   24 GLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIF 234
            G+N NFL+PD +  E           + E+R+I     +II+ L    G +I D+G GTGLF+ P   AVG++G VYA++I+P F+E + K  +   L N T       D+ L A    D+  + DVYHH EY Q  + ++ K +  GG+LV+IDF+RIPGK      DW LSHVRAG+E F+ EIE+AGFE   E+ +S  +ENYFL F
Sbjct:   35 GINDNFLDPDLKVEEWVKR------FEVESREIFHGRDEIIQQLKLKPGDRIADIGTGTGLFIEPFSKAVGQDGWVYALDIAPKFVERVGKLAKEYHLENVTPVVCGEDDVRL-APRSIDVAFICDVYHHFEYPQPSLASIHKALVPGGQLVVIDFNRIPGK----SRDWTLSHVRAGKEEFRKEIEDAGFEFVEEVKISAFKENYFLRF 233          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: WP_105327786.1 (methyltransferase domain-containing protein [Blastopirellula marina] >PQO40550.1 SAM-dependent methyltransferase [Blastopirellula marina])

HSP 1 Score: 159.1 bits (401), Expect = 1.700e-35
Identity = 90/210 (42.86%), Postives = 125/210 (59.52%), Query Frame = 0
Query:   24 GLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIF 234
            G+N NFL+PD +  E           + E+R+I     +I++ L   +G +I D+G GTGLF+ P   AVGK G VYAV+I+P F+E + K  E   L N T       D+ L A    D+  + DVYHH EY Q+ ++++ K +  GG+LV+IDF+RIPG+      DW LSHVRAG+E F+ EIE AGFE   E+ +   +ENYFL F
Sbjct:   35 GINDNFLDPDLKVEEWVKR------FEVESREIFHARDEIVQQLKLKSGDRIADIGTGTGLFVEPFAKAVGKNGWVYAVDIAPKFVERVGKLAEEYQLDNVTPVVCGEDDVRL-APRSIDVAFICDVYHHFEYPQSSLESIHKALVPGGQLVVIDFNRIPGE----SRDWTLSHVRAGKEGFRKEIEAAGFEFVEEVKIEAFKENYFLRF 233          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: WP_105358094.1 (methyltransferase domain-containing protein [Blastopirellula marina] >PQO26210.1 SAM-dependent methyltransferase [Blastopirellula marina])

HSP 1 Score: 155.6 bits (392), Expect = 1.900e-34
Identity = 83/213 (38.97%), Postives = 128/213 (60.09%), Query Frame = 0
Query:   24 GLNANFLEP--DAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGL-PADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIF 234
            G+N +FL+P  D E    ++        + E+R++     +I++ +    G ++ D+G GTGLF+ P   AVG++G VYA++I+P F+E ++K  E   L N T       D+ L P  + A    + DVYHH EY +  + ++ K M  GGKLV+IDF+RIPG+      +W ++HVRAG+EVF+AEIE+AGF    E+ + + +ENYFL F
Sbjct:   33 GINDSFLDPELDVESYVKRF--------EVESREVFAARNEIVERMKLSPGDRVADIGTGTGLFVEPFSEAVGEKGWVYALDIAPKFVERVEKLAEIRSLSNVTPVLCGQDDIRLAPGSINA--AFICDVYHHFEYPEQSLASIHKAMSPGGKLVVIDFNRIPGE----SREWTINHVRAGKEVFRAEIEKAGFRFVNEVEVPSFKENYFLQF 231          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: APZ90569.1 (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Fuerstia marisgermanicae])

HSP 1 Score: 153.7 bits (387), Expect = 7.200e-34
Identity = 80/215 (37.21%), Postives = 125/215 (58.14%), Query Frame = 0
Query:   22 PDGLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP 237
            PDG+N +FL+PD +  E           + E+R++      I+KA+G   G  I D+G+GTGL++      VG EG VYAV+ISP  ++ ++++ + E L N  V +       L  D + D V + D YHH EY ++ + ++   ++ GG+L+LIDF+RIPG       +WV++HVRA ++ F+AE+E AGFE   E+ +   +ENY L F  P
Sbjct:  778 PDGINDSFLDPDLDPSEWVNR------FEIESREVFAARGSILKAVGLKPGMSIADIGSGTGLYVGLFSKEVGTEGRVYAVDISPRLVDFVRRRVKAEELHNVEVVQSDEKSAKL-GDRKVDRVFVCDTYHHFEYYESMLASIMDALKPGGELILIDFNRIPGT----SREWVVNHVRADKQTFQAEVEAAGFEFIDEVRIPEFKENYLLRFRKP 981          
BLAST of NO14G02260 vs. NCBI_GenBank
Match: WP_083732515.1 (methyltransferase domain-containing protein [Fuerstia marisgermanicae])

HSP 1 Score: 153.7 bits (387), Expect = 7.200e-34
Identity = 80/215 (37.21%), Postives = 125/215 (58.14%), Query Frame = 0
Query:   22 PDGLNANFLEPDAEGLEAKYAGAKGLFTDPETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVYAVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDVYHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRAGQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP 237
            PDG+N +FL+PD +  E           + E+R++      I+KA+G   G  I D+G+GTGL++      VG EG VYAV+ISP  ++ ++++ + E L N  V +       L  D + D V + D YHH EY ++ + ++   ++ GG+L+LIDF+RIPG       +WV++HVRA ++ F+AE+E AGFE   E+ +   +ENY L F  P
Sbjct:  179 PDGINDSFLDPDLDPSEWVNR------FEIESREVFAARGSILKAVGLKPGMSIADIGSGTGLYVGLFSKEVGTEGRVYAVDISPRLVDFVRRRVKAEELHNVEVVQSDEKSAKL-GDRKVDRVFVCDTYHHFEYYESMLASIMDALKPGGELILIDFNRIPGT----SREWVVNHVRADKQTFQAEVEAAGFEFIDEVRIPEFKENYLLRFRKP 382          
The following BLAST results are available for this feature:
BLAST of NO14G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24583.11.600e-9775.77methyltransferase type 11 [Nannochloropsis gaditan... [more]
EWM24584.16.300e-7074.58methyltransferase type 11 [Nannochloropsis gaditan... [more]
CEM11033.19.100e-5347.62unnamed protein product [Vitrella brassicaformis C... [more]
GBG25836.19.400e-4247.27Methyltransferase-like protein 7B [Aurantiochytriu... [more]
PCJ53189.12.000e-3642.25SAM-dependent methyltransferase [Planctomycetes ba... [more]
WP_105351809.14.500e-3642.86methyltransferase domain-containing protein [Blast... [more]
WP_105327786.11.700e-3542.86methyltransferase domain-containing protein [Blast... [more]
WP_105358094.11.900e-3438.97methyltransferase domain-containing protein [Blast... [more]
APZ90569.17.200e-3437.21Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
WP_083732515.17.200e-3437.21methyltransferase domain-containing protein [Fuers... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002442NSK002442Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02260.1NO14G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590364gene_5804Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100062g26gene5901Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02260.1NO14G02260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02260 ID=NO14G02260|Name=NO14G02260|organism=Nannochloropsis oceanica|type=gene|length=1088bp
ATGGCAGCTGCAGCGCCGGAGCCTAAGAAGGAAGGGCTGGTGGCCTTTGA
CAAAGgtccgtgttgatagtcaaaaacgtcatctctcctcccctcccttt
tgactccccccctcctccacctcccacctcccactctcactttctagATC
ACTATCCCGACGGTCTTAACGCCAATTTTTTAGAACCAGACGCGGAGGGA
TTGGAAGCCAAGTATGCCGGGGCGAAGGGATTGTTCACAGACCCAGAGAC
ACGGGACATAGCACGCAATGTGGCTGACATTATAAAAGCTCTAGGTGACC
TGACCGGCAAGAAAATTGTGGACCTGGGAGCCGGGACGGGCTTATTTCTT
GTCCCCTTGGACGCGGCCGTGGGAAAGGAAGGTCACGTCTACGCTGTAGA
GATCTCTCCAGGATTCATAGAGTTACTACAGAAGAAGAAGGAGACGGAAG
GGCTAAGAAACACCACGGTAGCTCGAGGGTCTGTCACAGACATGGGACTG
CCAGCTGACCTTCAGGCAGATATCGTTTTGCTGGTTGACGTCTACCATCA
TATTGAGTATGTACAGACGTATATGAAGAATGTGCGGAAGGGCATGCGGA
AAGGGGGCAAGCTTGTGCTGATTGACTTTCACCGGgtgaggagggagaag
aggaagaggagggagaggcaaagtgaatgtgtgtgcatgcttttctatcg
tgggaaattgtgtgttgatttgatttcgatcaaacacagtctcttacgac
cattgtgtgaacaagccaccctctcttgtggcgggactggtgtacatggg
tttcgctctcgtatatgtcccctccccagagattagtgcgatgaactttg
catgcagcacggttgatatataactctcttgatcccgggcatttttccaa
ccctaacttttccattacagATTCCGGGTAAAATCTGGAGCCATCCTCCC
GACTGGGTCTTGTCGCACGTCCGGGCAGGCCAAGAGGTGTTCAAGGCCGA
GATCGAGGAGGCTGGGTTCGAGCTCGAGAGAGAGATTACTTTGTCCAACC
TGCAAGAAAATTATTTTCTCATTTTTGTGAATCCATGA
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protein sequence of NO14G02260.1

>NO14G02260.1-protein ID=NO14G02260.1-protein|Name=NO14G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MAAAAPEPKKEGLVAFDKDHYPDGLNANFLEPDAEGLEAKYAGAKGLFTD
PETRDIARNVADIIKALGDLTGKKIVDLGAGTGLFLVPLDAAVGKEGHVY
AVEISPGFIELLQKKKETEGLRNTTVARGSVTDMGLPADLQADIVLLVDV
YHHIEYVQTYMKNVRKGMRKGGKLVLIDFHRIPGKIWSHPPDWVLSHVRA
GQEVFKAEIEEAGFELEREITLSNLQENYFLIFVNP*
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Synonyms
Publications