NO14G02180, NO14G02180 (gene) Nannochloropsis oceanica

Overview
NameNO14G02180
Unique NameNO14G02180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1367
Alignment locationchr14:658443..659809 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:658443..659809 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
The following BLAST results are available for this feature:
BLAST of NO14G02180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02180.1NO14G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590338gene_5795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02180.1NO14G02180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02180 ID=NO14G02180|Name=NO14G02180|organism=Nannochloropsis oceanica|type=gene|length=1367bp
ATGGCCTTGCTTCTCCCCCCTGCGTCGACCTCCGCCCCTCCTCTCGAGGT
CCAATACTTCGCGGCAAATGTTCTACGCACCAAGGCCACGCGTGACTGGG
CGGAGATCTCGCAGGAGCCAGGGCAGAGTACTGCTCTTATGGAAAATTTG
CTGAGGTTCCTCCAGCACCAGCAACCAAAGCTACACCGGGAACACGAGCA
CCGCCTTGTCCTCTTCCGGGTTTGCCACACGCTCACCACACTCGCCGTCA
AGAGCACCCCTAGAAGCTCTTTCAGCGGGATCACTCTCCTCGTGAACGAA
GCGTTTAACTTCCTAGGTGGCAACGCCGATGTAATCCCTTCCTCTCCCGC
AACTTCCCTCACGATCGGCCTCTGTCTCATTCGAGCATTACCTGAAGAAG
TGGGCCGTGTGGATATGTCTCGTGGTCGACGAAAGGAGCTACAGCAAGAG
ACATTGCGGCAGgtaaggccacaagttgtaagagtggtggagttacttgt
gttgcagcgaatgagtgacgtagggcaattggcattggagacgcttgagg
catgggtggagcagggtggagcgagggagggagggagagagggagggaag
gagggttgacgctcacgacactggtacagGAGGCCCCAGGGTTGTTCGGG
GGGCTGTTGGGGTTGCTTGCGGGTGAAGGGGGAAGGGAGGGGAAAAGTGA
GAGGAGAGAGTTGGGAGTGCGTGCGGTAGCTTGTAAGTTGTTGCTGCGGT
TGGTAGATGTTATCCTCTTCCACCAGAGCGAGCGGTGGTTGTACAGCGAT
TATACGAAGCCGTCTTGGTGGGAgtaagctcggtgatgaaaggacaggac
gagctattatttcatgcgtttgcttcgtttgtggccgagttgtgcacgcg
ggaagcggaggtattgggacgaggcttgaacatgcagatggtggagttga
tgctagggatggcgggttgttaaaacgtgcacgtttcgacgttggcgttg
gagttctgggaggttttgatggaggtacctgttgttgaacgcgatcctct
cttgagagaacatttatgtctgcggctggttgccgttggtggaaagGTTA
GCCTACCCCTCCCGTTTCACCTCTTGGGAGGACGCGTTGAACTTGGAAGA
GGAAGACTTTGTCGGGTACAGGGAAGGAGATGCCCTCAAGACGGTGCTCG
AGTCGTGCTACGCGATTTTGCGGGTGCAATTTTCGAGCAGCTCTGGCAAG
GTTCACAGCAGCAGCAGCAGCAGCAGCAGCAAAAGGAGGATGGGAATTCA
TCAGCAACCGCAACCACACATTTTCTTCTTAATATTCTTCAGCATAATCT
TTCCATTCCCAGCGTAG
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protein sequence of NO14G02180.1

>NO14G02180.1-protein ID=NO14G02180.1-protein|Name=NO14G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MALLLPPASTSAPPLEVQYFAANVLRTKATRDWAEISQEPGQSTALMENL
LRFLQHQQPKLHREHEHRLVLFRVCHTLTTLAVKSTPRSSFSGITLLVNE
AFNFLGGNADVIPSSPATSLTIGLCLIRALPEEVGRVDMSRGRRKELQQE
TLRQEAPGLFGGLLGLLAGEGGREGKSERRELGVRAVACKLLLRLVDVIL
FHQSERWLYSDYTKPSWWELAYPSRFTSWEDALNLEEEDFVGYREGDALK
TVLESCYAILRVQFSSSSGKVHSSSSSSSSKRRMGIHQQPQPHIFFLIFF
SIIFPFPA*
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Synonyms
Publications