NO14G02040, NO14G02040 (gene) Nannochloropsis oceanica

Overview
NameNO14G02040
Unique NameNO14G02040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length432
Alignment locationchr14:622133..622564 -

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Properties
Property NameValue
DescriptionTrafficking protein particle complex subunit 4
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:622133..622564 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030008TRAPP complex
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR007233Sybindin
Homology
BLAST of NO14G02040 vs. NCBI_GenBank
Match: XP_005855407.1 (trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >XP_005855438.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >EKU20924.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526] >EKU20956.1 trafficking protein particle complex subunit 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 284.3 bits (726), Expect = 2.200e-73
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSD 143
            MFLHLF+ISRSGGLIYNKDLS SAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRT VKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRC+LFQQGVERLIERNSRELKKARSD
Sbjct:    4 MFLHLFVISRSGGLIYNKDLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSD 145          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: EWM24578.1 (trafficking protein particle complex subunit 4 [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 8.200e-73
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSD 143
            MFLHLF+ISRSGGLIYNK+LS SAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRT VKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRC+LFQQGVERLIERNSRELKKARSD
Sbjct:    1 MFLHLFVISRSGGLIYNKNLSSSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTGVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCDLFQQGVERLIERNSRELKKARSD 142          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: CBJ48431.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 196.1 bits (497), Expect = 7.700e-47
Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNS 134
            MFL LF++++SGGLIYN++LS +APRL  N+WL LGSTFH LH+IAAQVAP+ SSGIEKLE D  KLQ FQ+ T VKFV+TAE GTPDL  VL  IYELY DYVLKNPFYE++MPIRCELF   +E LIER+S
Sbjct:    1 MFLQLFVVNKSGGLIYNQNLSSAAPRLNSNDWLRLGSTFHSLHAIAAQVAPVPSSGIEKLETDTFKLQSFQTLTGVKFVITAEAGTPDLGGVLQEIYELYTDYVLKNPFYELEMPIRCELFTLYLEELIERHS 133          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: GAY03468.1 (Hypothetical protein PINS_011291 [Pythium insidiosum])

HSP 1 Score: 171.4 bits (433), Expect = 2.000e-39
Identity = 80/143 (55.94%), Postives = 104/143 (72.73%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSDG 144
            M   L+II++SGGLIY  DLS +APRL+ N+ L LGSTFH +H+IA   AP+AS GIE LE D  +LQCFQ+ T +KF +TA  GTPDLD+ L  IYELY DYVLKNPFYE++MPIRC LF  G++  +++ + +  + R  G
Sbjct:    1 MLHSLYIINKSGGLIYQLDLSSAAPRLSSNDHLRLGSTFHSMHAIAVLAAPVASGGIESLETDTFRLQCFQTPTGIKFFITAALGTPDLDHALRTIYELYVDYVLKNPFYELEMPIRCSLFNAGLKSFVDKFNADSARRRPQG 143          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: CCI39875.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 171.0 bits (432), Expect = 2.700e-39
Identity = 78/136 (57.35%), Postives = 103/136 (75.74%), Query Frame = 0
Query:    5 LFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKAR 141
            L+II++SGGLIY +DLS +AP+L+ N+ L LGSTFH +H+IAA  AP+ S GI  LE D  +LQCFQ+ T +KF +TA+ GTPDLDN L  IYELY DYVLKNPFYE++MPIRC LF  G++  +E+ + +  + R
Sbjct:    5 LYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVVSGGINSLETDTFRLQCFQTLTGIKFFITAQLGTPDLDNALKTIYELYVDYVLKNPFYELEMPIRCILFNTGLKSFVEKFNSDTSRRR 140          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: CCA19185.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 167.2 bits (422), Expect = 3.800e-38
Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 0
Query:    5 LFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKAR 141
            L+II++SGGLIY +DLS +AP+L+ N+ L LGSTFH +H+IAA  AP+AS GI  LE D  +LQCFQ+ T +KF +TA+ GT D+DN L  IYELY DYVLKNPFYE++MPIRC LF  G++  +++ + +  + R
Sbjct:    5 LYIINKSGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPVASGGINSLETDTFRLQCFQTLTGIKFFITAQLGTLDIDNALKTIYELYVDYVLKNPFYELEMPIRCTLFNAGLKLFVDKFNNDSSRRR 140          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: XP_002291636.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91743.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 164.9 bits (416), Expect = 1.900e-37
Identity = 81/147 (55.10%), Postives = 107/147 (72.79%), Query Frame = 0
Query:    2 FLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL-------ASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRE-LKKAR 141
            FLHLFI+++SGGLI ++ L  SAP++  NEWL +GSTFH LH+IAA+ +P           GIE+++   + L+C Q+RT +KFVLTAEPGTPD+D VL  IY LYAD  LK+PFYE++MPIRCELF   ++ LIER + E + KAR
Sbjct:    3 FLHLFIVNKSGGLILHRPLGPSAPKIGTNEWLRIGSTFHSLHAIAAEASPKRLPGNKNPDDGIEEIQGGGIILKCLQTRTGIKFVLTAEPGTPDMDTVLREIYVLYADCALKDPFYELEMPIRCELFTNAIDGLIERVAVEGVGKAR 149          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: OEU10016.1 (Sybindin-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 163.3 bits (412), Expect = 5.500e-37
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL---------ASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTP---DLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSR 135
            MFLHLFI+++SGGLI+++ LS  AP+L  NEWL +GSTFH L++IA + +P+         A  GIE+++ D + L CFQ+RT +KFV+TAEP T    DL  +L  IY LY D  LK+PFYE++MPIRCELF QGVE LI++ SR
Sbjct:    1 MFLHLFIVNKSGGLIHHRSLSSKAPKLGTNEWLRIGSTFHSLYAIANEASPVKLPGNKKNGADDGIEEIQADGMTLNCFQTRTGLKFVITAEPNTTAAVDLGQILREIYMLYTDCCLKDPFYELEMPIRCELFTQGVENLIQKYSR 146          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: EJK49950.1 (hypothetical protein THAOC_31128 [Thalassiosira oceanica])

HSP 1 Score: 160.2 bits (404), Expect = 4.700e-36
Identity = 75/140 (53.57%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    2 FLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPL----------ASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIER 132
            FLHLFI+++SGGLI ++ L   AP +  N+WL +GSTFH LH+IAA+ +P+          A  GI+++E   + L+C Q+RT +KFVLTAEPGT D+D  L  IY LYAD  LK+PFYE++MPIRCELF   V+ LIER
Sbjct:    3 FLHLFIVNKSGGLILHRSLGPRAPSIGTNDWLRIGSTFHSLHAIAAEASPVRLPKNKNPSGADDGIQQIEGSGVTLKCLQTRTGIKFVLTAEPGTTDIDTALREIYVLYADCALKDPFYELEMPIRCELFTSAVDNLIER 142          
BLAST of NO14G02040 vs. NCBI_GenBank
Match: OWZ17777.1 (hypothetical protein PHMEG_0008229 [Phytophthora megakarya])

HSP 1 Score: 157.9 bits (398), Expect = 2.300e-35
Identity = 73/140 (52.14%), Postives = 100/140 (71.43%), Query Frame = 0
Query:    1 MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVAPLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELYADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKAR 141
            M   L++I+++GGLIY +DLS +AP+L+ N+ L LGSTFH +H+IAA  AP  S GI+ LE    +LQC Q+ T +KF +TA  GTPDLD  L  +YELY DYVLKNPFYE++MPIRC LF  G++  +++ + E  + R
Sbjct:    1 MLHSLYVINKAGGLIYQQDLSPAAPKLSSNDHLRLGSTFHSMHAIAALAAPTNSGGIDSLETATFRLQCLQTPTGIKFFITAALGTPDLDVALQTVYELYVDYVLKNPFYELEMPIRCSLFNTGLKTFVDKFNLESGRRR 140          
The following BLAST results are available for this feature:
BLAST of NO14G02040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855407.12.200e-7397.18trafficking protein particle complex subunit 4, pa... [more]
EWM24578.18.200e-7396.48trafficking protein particle complex subunit 4 [Na... [more]
CBJ48431.17.700e-4770.68conserved unknown protein [Ectocarpus siliculosus][more]
GAY03468.12.000e-3955.94Hypothetical protein PINS_011291 [Pythium insidios... [more]
CCI39875.12.700e-3957.35unnamed protein product [Albugo candida][more]
CCA19185.13.800e-3855.88conserved hypothetical protein [Albugo laibachii N... [more]
XP_002291636.11.900e-3755.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU10016.15.500e-3754.11Sybindin-like protein [Fragilariopsis cylindrus CC... [more]
EJK49950.14.700e-3653.57hypothetical protein THAOC_31128 [Thalassiosira oc... [more]
OWZ17777.12.300e-3552.14hypothetical protein PHMEG_0008229 [Phytophthora m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002420NSK002420Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G02040.1NO14G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590285gene_5776Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100062g3gene5881Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G02040.1NO14G02040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G02040 ID=NO14G02040|Name=NO14G02040|organism=Nannochloropsis oceanica|type=gene|length=432bp
ATGTTCCTCCATCTCTTCATAATATCGCGGTCGGGCGGCCTGATCTACAA
TAAGGATCTGAGCGTCAGTGCGCCCCGCCTCACCGTGAACGAATGGCTCG
TCTTGGGGTCGACCTTCCACGGCCTGCACTCCATCGCGGCGCAAGTCGCG
CCCTTGGCCTCGTCAGGCATTGAGAAACTCGAGTGCGACAATCTGAAGCT
CCAGTGCTTTCAAAGTCGGACGGCTGTTAAGTTTGTCTTGACAGCCGAGC
CGGGCACGCCGGACTTGGACAATGTGCTGCATGGGATTTACGAGCTCTAC
GCGGATTACGTGCTGAAGAACCCCTTCTACGAAATGGACATGCCGATTCG
CTGCGAGTTGTTTCAACAGGGCGTGGAGCGGTTGATCGAGCGGAATTCCC
GGGAGCTGAAAAAGGCGCGCAGTGATGGGTGA
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protein sequence of NO14G02040.1

>NO14G02040.1-protein ID=NO14G02040.1-protein|Name=NO14G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MFLHLFIISRSGGLIYNKDLSVSAPRLTVNEWLVLGSTFHGLHSIAAQVA
PLASSGIEKLECDNLKLQCFQSRTAVKFVLTAEPGTPDLDNVLHGIYELY
ADYVLKNPFYEMDMPIRCELFQQGVERLIERNSRELKKARSDG*
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Synonyms
Publications