NO14G01950, NO14G01950 (gene) Nannochloropsis oceanica

Overview
NameNO14G01950
Unique NameNO14G01950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3839
Alignment locationchr14:597824..601662 -

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Properties
Property NameValue
DescriptionCockayne syndrome 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:597824..601662 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of NO14G01950 vs. NCBI_GenBank
Match: EWM24630.1 (cockayne syndrome 1 [Nannochloropsis gaditana])

HSP 1 Score: 527.7 bits (1358), Expect = 4.100e-146
Identity = 285/474 (60.13%), Postives = 342/474 (72.15%), Query Frame = 0
Query:    3 ERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQN--RHRRRRKGAGTI---GSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCSRHDIQNSQCLDDEEGDKSPKDGFGRKR 472
            + L+  RAEG LRP A E  VH RRL H + S R+E+K+ Q+GP+N +DLDP ++R+LLVA+GDATVGLYD+         + DG       RV+SL VTPR          D T    +    + ALAAR  PP+ GHRYSVTSVQWYP DTG+FVSGSTDG+V+VWDTN+F +AGTF LGS VHA+A+S AM + SL+AVGTDDRRVRLCDLKSGGSSHLL GHA+ VTTVAWSPT+E    XXXXXXXXXXXXXX      C+ TLDQ  DHRG A G++   T LAKAH GW+VS++FTPNGC+L+SAGTDKRLRLWNA +G NTL+NYAGTHND A GWK+KAIQT  + G     G G M++YPNG SGEVLL+PL+ +     R R + +G +    +VG+P H LRGHLD VQS+ +RRDA QIITGGADSLLLVFDCSRHD + S+ LD E   + PK   G KR
Sbjct:    4 QSLITRRAEGHLRPSALETSVHTRRLMHAALSTRIEVKSSQQGPINQIDLDPCDERYLLVASGDATVGLYDMEVEPAQDGSESDGQDGSMPSRVQSLHVTPRTRAHVTENIGDLTRGRVSSSIGNAALAARMQPPSGGHRYSVTSVQWYPPDTGIFVSGSTDGSVQVWDTNLFVSAGTFSLGSKVHAVAMSRAMLSRSLIAVGTDDRRVRLCDLKSGGSSHLLAGHAQTVTTVAWSPTEEXXXXXXXXXXXXXXXXXXXXXXXXCLKTLDQDADHRGRATGILSAPTALAKAHAGWVVSLDFTPNGCWLVSAGTDKRLRLWNAMSGQNTLLNYAGTHNDIAVGWKIKAIQTAGRRGIGRDWGEGNMILYPNGRSGEVLLFPLLSRGGMSGRSRSQSSGRLERPRAVGQPSHRLRGHLDVVQSMAYRRDAGQIITGGADSLLLVFDCSRHDKEESRLLDGENDGQYPK---GSKR 474          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: CBJ31103.1 (WD-repeat protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 238.4 bits (607), Expect = 5.000e-59
Identity = 164/494 (33.20%), Postives = 226/494 (45.75%), Query Frame = 0
Query:    4 RLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDL-GATERVPQ-DDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNT---SDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQ------------------------------------------------YTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCS 445
            R L  R  G LR  +    +   R+  +     VEIK+   GPV  LD+D  E+R+LL    D TV ++DL GA E+ P     D  ++GP       +  P A  + A   R            V  S             HR+SV+ VQWYP+DTGLFVSG+ DG V+VWDTN       FD    V++ ++S     H L+AVG+D  + RLCD++SG  +H L+GH+EAV+  AWSP  E LLA              RSG SAC+++LDQ                                                Y  H   AP     A++ A+AH G + S+ F P G +LL+AGTD RLRLW   TG NT+ NY  T N +    +   +  G   G    +     V +PN  SG+VL++PL   +               GRP   LRGH D VQ   +R   ++++T GAD L+L++  +
Sbjct:    5 RALERRRAGVLRQRSTADKLRTSRVSQLDLDINVEIKSPHHGPVTWLDVDSAEERYLLTGGADCTVAVFDLDGAGEKRPSLASGDDNNSGP------RRHGPAAETVAARRRRPKVLREVGRTPRVPLSQXXXXXXXXXXXXHRHSVSVVQWYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTVRLWDIRRSGASACLISLDQHXXXXXXXXXXXXXXXXXXCGSGXXXXXXXXXXXXXXXXXXXXXXXRGYLKHIKLAP-HASRASKFARAHAGPVNSLCFAPEGLHLLTAGTDNRLRLWEVETGRNTMTNYLQTKNKRR---RPFGMAVGRPAGRRSET-----VFFPNDKSGDVLVFPLHTPD---------------GRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWSAA 468          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_004353363.1 (CSA protein [Acanthamoeba castellanii str. Neff] >ELR23835.1 CSA protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 196.8 bits (499), Expect = 1.700e-46
Identity = 137/446 (30.72%), Postives = 200/446 (44.84%), Query Frame = 0
Query:   25 ARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDH---------RGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCSRHDIQNSQCLDDEEGDK 462
            ARR   +  S + EI +        L +D  E R+LL  AGD T+ ++DL      P+              R   +TP                        + LA RG     GH + V+S+ WY  DTG+F SGS D  V  WDTN       F++   V++++LS     H+LVA G+ D++VRLCD  +GGS+H L GH EA+  V WSPT E+LLA              RSG   C+++LDQ+            R       GGA     AH+  + S+ ++P+G +L S+G D ++ +WNA TG NTLVN+AG  N               KG     S  G ++ +PNG+        ++    H             GR +  LRGH D V   V     +++ +GG D+ LL   C    +  ++ ++DE  D+
Sbjct:    7 ARRAYDLDLSGKREITSANHAAFTSLAIDLVEARYLLAGAGDGTISVFDLHQFGGNPR--------------RRAAITP------------------------LFLAKRG-----GHTHGVSSIAWYTHDTGMFFSGSFDHKVNAWDTNAQRVVCQFEMPLPVYSISLSPIATRHALVAAGSGDQKVRLCDPMTGGSTHCLLGHREAILAVQWSPTNEYLLASASVDKTIRLWDIRRSG---CLLSLDQHNSQTALETNRTLRLKNVSAKGGAPTSVTAHDEPVTSLCWSPDGLFLYSSGKDNKIHMWNADTGRNTLVNFAGVKN------------AAEKGSQMAISSDGQVLYHPNGSD-------ILALEAH------------TGRTLSLLRGHFDKVNCCVFHPHLQELYSGGNDNQLL---CWVPSMDEAELVEDEATDE 372          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_016607054.1 (hypothetical protein SPPG_05964 [Spizellomyces punctatus DAOM BR117] >KNC99014.1 hypothetical protein SPPG_05964 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 194.5 bits (493), Expect = 8.200e-46
Identity = 123/339 (36.28%), Postives = 172/339 (50.74%), Query Frame = 0
Query:    1 MMERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTH 340
            M  RLL  R E   + P  E    + R      S    +     GP+N LD++  E R+LL  + D T+ LYDL   + VP   D   STG       L+  P A  L                +  +A   R      GH+YSVT V W+P DTGLF + S DGTV+VWDTNV  +   F++ ++V+   +S+   +H+L+A GT +  VRLCD+++G  +H L GH  +V TV WSP  E LLA              ++   AC+++LDQ+    G       G  +   AHNG +  + FT +G YL+SAG D+ LRLW+ ++G NTLVNY G H
Sbjct:    1 MTYRLLRSREENP-QLPKIELHWSSSRFLTTELSKTKGLAKVATGPINALDIEALEGRYLLAGSADTTIHLYDLEEWDTVPSGSDQ-TSTG-------LRRPPPARAL----------------SRPIATVER----RAGHQYSVTGVHWFPTDTGLFTTSSMDGTVKVWDTNVMQSVCAFNIENHVYVHEMSSVATSHNLIATGTAESPVRLCDMRTGAFTHSLMGHRGSVLTVRWSPRDEFLLASGSTDHTIRFWDIRKA--KACLISLDQH--ETGSRRREDNGDNDSTSAHNGHVNGLGFTSDGLYLISAGHDESLRLWDVFSGKNTLVNY-GPH 305          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_002611101.1 (hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae] >EEN67111.1 hypothetical protein BRAFLDRAFT_206058 [Branchiostoma floridae])

HSP 1 Score: 194.1 bits (492), Expect = 1.100e-45
Identity = 154/465 (33.12%), Postives = 205/465 (44.09%), Query Frame = 0
Query:    2 MERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQ-TGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVF--DCSRHDIQNSQCLDDEEGDKSP 464
            M   L+ R  G L P A       RR   +  S   ++K      VN LDLDP E R+LL    D  + +YD                        +L  TP              S TA       A+   G      H+YSV +V+WYP DTGLF S S D T++VWDTN    A  F     V++ A+S   + H L+AV T    V LCDLKSG S+H+L GH  AV    WSP   +LLA              RS  S+ +M+LDQ   H G    +      +  AHNG +  + FTP G +LLS GTD RLRLW+  TG NTLVNY      K C    K++Q T S+G          +V  P+ +S  + ++ +                   G  +H L GH + VQ  V   D +++ +GG+DS +LV+  D  R +       D EE  K P
Sbjct:    1 MLNFLSCRENGTLDPLALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPAESRYLLSGGADGVIAVYD----------------------THNLSGTP--------------SSTAE------AVCTVGRSHRHVHKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNALLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLA-TGSQDNKVLLWDVRSAKSS-LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYG-----KICNDSKKSVQFTVSRGSSP------DVVFVPDDSS--IAMFDVFG-----------------GTSLHRLVGHYNYVQCCVFNPDTQELYSGGSDSNILVWVPDLGRGE-------DYEESKKQP 378          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_020763462.1 (DNA excision repair protein ERCC-8 isoform X1 [Odocoileus virginianus texanus])

HSP 1 Score: 194.1 bits (492), Expect = 1.100e-45
Identity = 132/436 (30.28%), Postives = 192/436 (44.04%), Query Frame = 0
Query:    6 LAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVF 442
            L+ R  G   P         RR+  +  +   +++      VN LD++P E R++L    D  + LYDL  + R P                                               A+ + G    + H+YSV +VQWYP DTG+F S S D T++VWDTN    A  F+    V++  +S     HSLVAVGT   +V+LCDLKSG  SH+L GH + +  V+WSP  EH+LA              R+  S C++TLDQ+   +  A      A     AHNG +  + FT +G +LL+ GTD R+RLWN+  G+NTLVNY   +ND   G K   + +G          G T+ VY                           TI S G  +  L+GH  +V   V + + +++ +G  D  +L +
Sbjct:    5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQP------------------------------------------YYTCKAVCSIGRSHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHSLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYEHILATASADSRAKLWDVRRA--SGCLITLDQHNGKKSQA------AESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVYNDSRKGLKF-TVSSGCSSEFVFVPYGSTIAVY---------------------------TIYS-GEQIIMLKGHYKSVDCCVFQSNFQELYSGSRDCNILAW 361          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_019631468.1 (PREDICTED: DNA excision repair protein ERCC-8-like [Branchiostoma belcheri])

HSP 1 Score: 193.0 bits (489), Expect = 2.400e-45
Identity = 146/441 (33.11%), Postives = 198/441 (44.90%), Query Frame = 0
Query:    2 MERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQ-TGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVF 442
            M   L+ R  G L P A       RR   +  S   ++K      VN LDLDP E R+LL    D  + +YD                        +L  TP              S TA       A+   G      H+YSV +V+WYP DTGLF S S D T++VWDTNV   A  F     V++ A+S   + H L+AV T    V LCDLKSG S+H+L GH  AV    WSP   +LLA              RS  S+ +M+LDQ   H G    +      +  AHNG +  + FTP G +LLS GTD RLRLW+  TG NTLVNY    N+       K++Q T S+G          +V  P+ +S  + ++ +                   G  +H L GH + VQ  V   + +++ +GG+DS +LV+
Sbjct:    1 MLNFLSCRENGTLDPVALVRAETTRRTFSLELSKEQDVKRIHASGVNSLDLDPVEARYLLSGGADGVIAIYD----------------------THNLSGTP--------------SSTAE------AVCTVGRSHRHVHKYSVETVRWYPHDTGLFTSSSMDKTLKVWDTNVLLPAEVFQFEGTVYSHAMSPVAKKHCLIAVATMTSIVTLCDLKSGSSTHILKGHRAAVKCARWSPRNPYLLA-TGSQDNKVLLWDVRSAKSS-LMSLDQ---HNGE---LATSTAAVNTAHNGHVNGLCFTPEGLHLLSFGTDHRLRLWDTATGRNTLVNYGKISNESK-----KSVQFTVSRGSSP------DVVFVPDDSS--IAMFDVFG-----------------GTSLHRLVGHYNYVQCCVFNPNTQELYSGGSDSNILVW 361          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: GAQ85546.1 (putative WD-40 repeat family protein [Klebsormidium nitens])

HSP 1 Score: 192.6 bits (488), Expect = 3.100e-45
Identity = 147/497 (29.58%), Postives = 209/497 (42.05%), Query Frame = 0
Query:    2 MERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEG-HRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGM------------------------------------MGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCSRHDIQNSQCLDDEEGDK 462
            M + L  R  G  +P    A +   RL  +  S   EI +G R  V  L +D  E R+LL  A D ++ ++D     +  QD       G  +  R  ++  R                                 TEG H+Y+V+SV WYP+DTGLFVSGS D TV+ WDTN      TF L + V A+A+S    TH+L+AVG+ D RVRLCD+ SGG +H L GH +AV  V WS + E +L               R+G   C   LDQ+    G  P                                      M  A +   AH+  + S++ TP+G YL S G D RLRLW+  TG+NTLVNY  T      G ++              S   + V  P+G+  +                  A  + S G P  +LRGH + V     +   +++ +GG D  +LV++        ++ L+DE  D+
Sbjct:   37 MWKHLQDRQTGSEKPQVTAARIAKSRLLALDLSTSKEISSGHRSGVTSLQVDNTEQRYLLSGASDGSLAVHDTQVPTKYEQD-------GTAVHERLFKIDKR---------------------------------TEGAHQYAVSSVSWYPIDTGLFVSGSFDDTVKCWDTNTLQVEMTFSLPAKVFAVAMSPVAVTHTLIAVGSGDTRVRLCDVSSGGFAHSLAGHRDAVWAVTWSLSSEFVLMTGGCDGAIRFWDIRRAG---CFKVLDQHKTQMGRRPPPRPQDTRTDPPNALQQREGRGPKRRGAPDRPQLLHPGMASALDRTSAHDAPVTSLQGTPDGQYLFSTGADSRLRLWDIETGNNTLVNYRTTRGKANRGTQIAV------------SPDSSHVYQPSGSVIQ------------------AFDVWS-GEPHATLRGHFEGVNCCTFQAHDQEMYSGGNDRQILVWE----PPAPAKVLEDEHADQ 455          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_003782786.1 (DNA excision repair protein ERCC-8 isoform X1 [Otolemur garnettii])

HSP 1 Score: 192.2 bits (487), Expect = 4.100e-45
Identity = 129/436 (29.59%), Postives = 192/436 (44.04%), Query Frame = 0
Query:    6 LAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVF 442
            L+ R  G   P         RR+  +  +   +++      VN LD++P E R++L    D  + LYDL  + R P                                               AL + G    + H+YSV +VQWYP DTG+F S S D T++VWDTN    A  ++    +++  +S     HSLVAVGT   +V+LCDLKSG  SH+L GH + +  V+WSP  +++LA              R+  S C++TLDQ+   +  A      A     AHNG +  + FT +G +LL+ GTD R+RLWN+  G+NTLVNY   +ND   G K   +  G          G T+ VY                           T+ S G  +  L+GH  +V   V + + +++ +GG D  +L +
Sbjct:    5 LSARQAGLEDPLYLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQP------------------------------------------YYTCKALCSIGRDHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADIYNFEETIYSHHMSPIATKHSLVAVGTRGPKVQLCDLKSGACSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA--SGCLITLDQHNGKKSQA------AESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVYNDSRKGLKF-TVSCGCSSEFVFIPYGSTIAVY---------------------------TVYS-GEQITMLKGHYKSVDCCVFQSNFQELYSGGRDCNILAW 361          
BLAST of NO14G01950 vs. NCBI_GenBank
Match: XP_020043289.1 (DNA excision repair protein ERCC-8 isoform X2 [Castor canadensis])

HSP 1 Score: 192.2 bits (487), Expect = 4.100e-45
Identity = 132/441 (29.93%), Postives = 193/441 (43.76%), Query Frame = 0
Query:    2 MERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHLDLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQVTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQWYPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHSLVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLAXXXXXXXXXXXXXXRSGTSACVMTLDQYTDHRGHAPGMMGGATELAK-AHNGWIVSVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKAIQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTIGSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVF 442
            M   L+ R  G   P  F      RR+  +  +   +++      VN LD++P E R++L    D  + LYDL  + R P                                               A+ + G    + H+YSV +VQWYP DTG+F S S D T++VWDTN    A  F     V++  +S     H LVAVGT   +V+LCDLKSG  SH+L GH + +  V+WSP  +++LA              R+  S C++TLDQ+        G    A E A  AHNG +  + +T +G +LL+ GTD R+RLWN+  G+NTLVNY    ND   G K   +  G          G T+ +Y                           T+ S G  +  L+GH  +V   V + + +++ +GG DS +L +
Sbjct:    1 MLSFLSSRQAGLEDPLRFRRAESTRRILSLELNKDRDVERIHSSGVNTLDVEPIEGRYMLSGGSDGVIVLYDLENSSRQP------------------------------------------YYTCKAVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFTFEETVYSHHMSPVSTKHCLVAVGTKGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRA--SGCLITLDQHN-------GKKSQAVESANTAHNGKVNGLCYTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNDSRKGLKF-TVSCGCSSEFVFVPYGSTIAIY---------------------------TVYS-GELITMLKGHYKSVDCCVFQSNFQELYSGGRDSSILAW 361          
The following BLAST results are available for this feature:
BLAST of NO14G01950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24630.14.100e-14660.13cockayne syndrome 1 [Nannochloropsis gaditana][more]
CBJ31103.15.000e-5933.20WD-repeat protein, putative [Ectocarpus siliculosu... [more]
XP_004353363.11.700e-4630.72CSA protein [Acanthamoeba castellanii str. Neff] >... [more]
XP_016607054.18.200e-4636.28hypothetical protein SPPG_05964 [Spizellomyces pun... [more]
XP_002611101.11.100e-4533.12hypothetical protein BRAFLDRAFT_206058 [Branchiost... [more]
XP_020763462.11.100e-4530.28DNA excision repair protein ERCC-8 isoform X1 [Odo... [more]
XP_019631468.12.400e-4533.11PREDICTED: DNA excision repair protein ERCC-8-like... [more]
GAQ85546.13.100e-4529.58putative WD-40 repeat family protein [Klebsormidiu... [more]
XP_003782786.14.100e-4529.59DNA excision repair protein ERCC-8 isoform X1 [Oto... [more]
XP_020043289.14.100e-4529.93DNA excision repair protein ERCC-8 isoform X2 [Cas... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002380NSK002380Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01950.1NO14G01950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|542181gene_5766Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100117g16gene5852Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01950.1NO14G01950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01950 ID=NO14G01950|Name=NO14G01950|organism=Nannochloropsis oceanica|type=gene|length=3839bp
CACTCTCATAAATTGCACTGTTGTCGTGACTTTTTTTTTTGGTAATGGCA
AATATAATACATTATCTCTCAAAGTCAATGAACCCAACCCCCCCCGTTTC
TCTCCCTGATCAAAGCAATATTGATAACATTTCTCCTCACGGTTCGTCCG
CTCCCGCCACTTCTCCCCCTACAACTCCGGCTGTCTCCAAACCCTCGGCC
GCCTCCTTCTCCTCAAGCTTGAATTTCATCGAGTCCTCCGTACCGATTTG
CGTCACCTCTAACGACCCCAACGTCCCATCAGGTAAGTCAAAGAGTCGAT
CCGCTTGAAACCTCATATAGCCCGCGGTCCAGTCCACAATCACCGCCCCT
TTCTCTCCCCGCGGCAGCAGGGGCGGGAATGCGAGGCTCAAGCCTCCATG
CAGCGACAACTCCCACGACCCCGGCATCCGCGCACTACTATCGTAGATGC
CCCGTCCACTCGAACCAAACAACTCAGGCTCCTCCGCCGTCGGTCCTTGC
ATGCCCAGCCTTTCCTTTTTCACCACCACCTTGTGCGCCTCGAAGGCCTC
CGTTGACCCCTTACTCTCGTACACAAACGACACCCGCGTCCTATAGTTCC
CCTGCCGAATCCAAGTCTCCGCTTCGAAGACCTCCTCTCCCTCCCTCCCT
CCCTCCTTCGCCTGGACCGAGGAGCGAGAGAAGACATTATCCGCTGCCAT
CGATCCGACTCCTCCCCTGAACATGGCCGGTACCATCGTGTGCTCTGCCA
CCACCACCGGCTCCAAGGGCCCGCCGTCCGCGGCATGCAATAGTGTTAGA
TCTCGCCACGACACAGTGCGGGCCTCGTTGTCCCCTACGCACTCTTGCCG
GCCCTTATAGATGTTCGTCATGCGGAGGACAGTGTCGCCATTGGCGCCTC
CGTTTGGGACAGGGGTGTACTCGCTCCAGACCCCCGACCAGGTACCGGTT
TGGGCCTTGAGGAAGAGATTGAGCTGCCATTGGTCTTGGGAGTTTTGCAT
GTCTGCGCGATATTTTGCAAGGAGCTCGTCGTCGGCCATGTATTCTATTT
CCTATTGATTGTCGGGGGACGTGAAGAATGTGAGGGAAGATGCATGAGAA
AGTGCAAGCGAGTATCAAGTGGCCAGGTTCAGGTTAAGGGAGAGGTCCCC
CTTTAAGCCTCTTTTCACGTTCAACCTTTCCCCCTTTCCCCTCCGACTAT
TCATCTTGATACCCTCATGTGCAGTTCTTCCGCTACCTCATCTTCCCTCT
CCCCCCTCAACATCCCGTGTCCCCTCCCCCTTTCCCTCCCTCACGTACAG
CTTGTTGGTCAGGGAACTCCGATTCATACTCATACTCGGACTCCCCACCC
AAGGGCATGGGTGGCATACCGTCACTTCCGTCGGGAGCAATGCTCTGGCG
GACCACTACGTGCTTCCGTTCGGGTACGAACACGGAGACGACGGAGGCAG
AGGGAGGGGGAGAGGAAGTCAAGACAGAGCGGCCCGTCGGCGCGGCAGGG
GGCTGCACCAAAAAGCTCAACACGGGTATGGGGATCAGCTGCAGTACTGC
CACCAGAAAAATTTTCAGGGCCGAGCCCTGGCTTTGCAATGGATGCACCA
TTGTTGCCTGCGCAGGAGACTGTGGCATGATTGAGCAGGAGGTCACAATT
CGATCAGTTCAGTCCTCACCCACAGCTGGCTAGTGCGGCAGGCACACCGA
AACCCAAGAAGAAAACAATATGCAATACAACACATCAAGAACAGGATGGA
TGAGAGGCCACCAGAAAACACTTGCTTCGTGAGACTGAGAAAGTTCTTGC
CTCGACTGCATCATCCGAGGAGTCCTGCTCTCAAAGAGTCTCTGACGGTC
ATGCTCTGCTTTCTTCCTTTCACTTTTTTCTTCTACACCCTATTTACTGT
ACCCTTTTCCTCACACACAGAAGCATGCGGAGGCCACAACGACCATGATG
GAAAGGCTTCTCGCCCATCGGGCCGAGGGGCGCCTCCGCCCACCCGCGTT
CGAGGCTGGCGTACATGCCCGCCGCCTCCGACACGTCTCGCCCAGTGCCC
GCGTGGAGATCAAGAATGGCCAACGTGGACCGGTGAATCACCTGGACTTA
GACCCGTACGAGGATCGCTTCCTGCTTGTAGCGGCGGGCGATGCCACGGT
GGGACTGTATGACCTGGGTGCCACGGAGCGGGTGCCGCAAGACGACGACG
ATGGCGCGAGTACAGGGCCTCTGCTGCGCGTGCGAAGCTTGCAAGTTACT
CCCAGGGCCAGCGTGCTGGGGGCAGGCGGCACAAGGGATAACACGAGCGA
CACCGCCGCAGGGGTGGCGGCAAGCATGGCATTGGCAGCACGGGGACCTC
CGCCGACTGAGGGACACCGGTACAGCGTGACAAGCGTGCAATGGTATCCG
TTGGACACTGGTTTGTTTGTGTCGGGCAGCACGGACGGCACGGTGCGAGT
CTGGGATACAAACGTCTTTGCCAATGCCGGCACATTTGATTTAGGCAGCA
ATGTACATGCCTTGGCTTTGTCGGCTGCTATGCGGACGCATTCGTTGGTG
GCGGTAGGGACGGATGATCGTCGTGTCCGTTTGTGCGATCTCAAGTCGGG
AGGGAGCAGCCATTTGCTAACGGGCCACGCGGAGGCCGTCACGACAGTCG
CCTGGTCCCCTACGCAAGAGCACCTCCTAGCCACAgtacgtccccaaaag
taattgttttgcttcaatgtaaaaccaacagctatttaaaccaagactct
ttctttccctacgcttcctctatcagGGCTCGCGCGACTCAACCGTCCGC
CTCTGGGACGTGCGTCGCTCCGGCACCTCTGCATGTGTCATGACCTTGGA
TCAATACACCGACCACCGGGGACACGCTCCCGGCATGATGGGGGGGGCTA
CAGAGCTGGCCAAGGCACACAACGGGTGGATTGTCTCGGTCGAGTTTACC
CCTAATGGGTGTTATCTACTGAGTGCTGGTACCGATAAACGCTTGCGACT
TTGGAATGCCTACACGGGAGATAATACGTTGGTAAACTACGCGGGGACGC
ATAACGACAAAGCGTGTGGATGGAAGGTCAAGGCCATCCAGACAGGGAGC
AAGGGAGGGGATGAGCTTCGCAGTGGTGGCGGGACCATGGTTGTGTATCC
GAATGGGGCCTCGGGTGAAGTGTTACTGTACCCGCTGATGCCACAAAATA
GGCACCGTCGTCGTCGGAAAGGAGCAGGGACGATTGGATCAGTGGGTCGA
CCGGTGCACAGCTTGCGGGGACATCTGGACGCCGTGCAGTCGGTGGTGCA
TCGGCGGGATGCCGAGCAGATAATCACCGGGGGGGCTGACAGTCTCTTGT
TGGTTTTTGATTGCTCCCGGCACGATATCCAAAATAGCCAGTGCTTGGAT
GACGAGGAAGGAGATAAATCGCCTAAGGATGGCTTTGGACGGAAGCGGAC
GGCGGGGGCAGCAGCGGATGACTGGAGTAGCGATGAAGAAGAAGGGGGAG
GAGGAGGAGAGGGTGGAGGGGGAGGCAATAGCGAAGGGGGTTTTGTTCCT
CCTATTCTACGAGTGGTCGAGGGCGATGACAGTCGGAGAGCCTCGCGGCG
AAGGGAATGTTGAGATTGTAAAAAAAAAAATCATATACGAAGACCGCCTG
TACAAAAAATGAAAGATTACGAGAAGAAAATGTGCTGCTATCCCCATTCC
GGTTTGGATGTTTCTATCTGGCGCAGAAAGGCAAAAAAAAATGGAAAACA
TTTGTACCAGTAATGTGTACAAACAATTATAAATGAGTAGGTAACAAGAA
TAAATGACGAGACTTATCCATTGGAATGAATCACCGGAT
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protein sequence of NO14G01950.1

>NO14G01950.1-protein ID=NO14G01950.1-protein|Name=NO14G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MMERLLAHRAEGRLRPPAFEAGVHARRLRHVSPSARVEIKNGQRGPVNHL
DLDPYEDRFLLVAAGDATVGLYDLGATERVPQDDDDGASTGPLLRVRSLQ
VTPRASVLGAGGTRDNTSDTAAGVAASMALAARGPPPTEGHRYSVTSVQW
YPLDTGLFVSGSTDGTVRVWDTNVFANAGTFDLGSNVHALALSAAMRTHS
LVAVGTDDRRVRLCDLKSGGSSHLLTGHAEAVTTVAWSPTQEHLLATGSR
DSTVRLWDVRRSGTSACVMTLDQYTDHRGHAPGMMGGATELAKAHNGWIV
SVEFTPNGCYLLSAGTDKRLRLWNAYTGDNTLVNYAGTHNDKACGWKVKA
IQTGSKGGDELRSGGGTMVVYPNGASGEVLLYPLMPQNRHRRRRKGAGTI
GSVGRPVHSLRGHLDAVQSVVHRRDAEQIITGGADSLLLVFDCSRHDIQN
SQCLDDEEGDKSPKDGFGRKRTAGAAADDWSSDEEEGGGGGEGGGGGNSE
GGFVPPILRVVEGDDSRRASRRREC*
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Synonyms
Publications