NO14G01920, NO14G01920 (gene) Nannochloropsis oceanica

Overview
NameNO14G01920
Unique NameNO14G01920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3104
Alignment locationchr14:591095..594198 -

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Properties
Property NameValue
DescriptionPlastid lipid-associated protein/fibrillin conserved domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:591095..594198 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
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BLAST of NO14G01920 vs. NCBI_GenBank
Match: XP_005783977.1 (hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >XP_005789400.1 hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516] >EOD31548.1 hypothetical protein EMIHUDRAFT_231716 [Emiliania huxleyi CCMP1516] >EOD36971.1 hypothetical protein EMIHUDRAFT_252286 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 64.7 bits (156), Expect = 4.900e-7
Identity = 48/148 (32.43%), Postives = 70/148 (47.30%), Query Frame = 0 
Query:  121 QGRWALLYTDAPGISSGRIGPFGLIKGRVFQEVDLTTRGYVNILEVSKPGQAPWLEAKLTAEFQVVDDTDWEVTFKDVVGMLRGKQVVKQVF-SGVSRVWTHTYLDREGGVRIMRA---------------RRPEKRPEDAFLFVLVR 253
            QG W + Y++AP  S+G +GP   ++G  FQ VD+ +R Y N  E+S  G A  L  +LTA F+        V F+ +   + G ++    F  G  R W  TY D +   R++RA                R E    D++LFVL R
Sbjct:   94 QGCWKVRYSNAPPPSNGALGP---VRGAAFQRVDVPSRTYTN--ELSLLGAA--LFVQLTATFEPRGPLALRVAFQTITFSILGLRLPPVAFPPGTERTWLLTYTDED--TRLVRAGVDGGRSTARDLGLLSREEGEAADSYLFVLTR 232
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BLAST of NO14G01920 vs. NCBI_GenBank
Match: XP_009039418.1 (hypothetical protein AURANDRAFT_66108 [Aureococcus anophagefferens] >EGB05874.1 hypothetical protein AURANDRAFT_66108 [Aureococcus anophagefferens])

HSP 1 Score: 64.3 bits (155), Expect = 6.500e-7
Identity = 47/145 (32.41%), Postives = 65/145 (44.83%), Query Frame = 0 
Query:  122 GRWALLYTDAPGISSGRIGPFGLIKGRVFQEVDLTTRGYVNILEVSKPGQAPWLEAKLTAEFQVVDDTDWEVTFKDVVGMLRGKQVVKQVF-SGVSRVWTHTYLDR---------EGGVRIMR----ARRPEKRPEDAFLFVLVR 253
            GRW + Y  AP  S+G +GP   ++G  FQ VD   R YVN L +        L   + A F+   D +  VTF+ +     G ++  + F  GV R W  TY D          +GG  + R      R     +DA+LFVL R
Sbjct:  506 GRWRVEYATAPSPSNGALGP---VRGAAFQVVDSAARSYVNELTLFDA-----LTVAVRASFEPRADDELRVTFEAIEVAAFGTRLFSKPFPPGVERTWCLTYTDAATRVVRAGVDGGRSVARDVGLLERDAGEAKDAYLFVLRR 642
The following BLAST results are available for this feature:
BLAST of NO14G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
XP_005783977.14.900e-732.43hypothetical protein EMIHUDRAFT_231716 [Emiliania ... [more]
XP_009039418.16.500e-732.41hypothetical protein AURANDRAFT_66108 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002384NSK002384Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01920.1NO14G01920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590237gene_5763Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100117g13gene5855Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01920.1NO14G01920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01920 ID=NO14G01920|Name=NO14G01920|organism=Nannochloropsis oceanica|type=gene|length=3104bp
TCTTACTTTTGTTCTCGAAGACATACAAACTTCAAACTTCATTCTTTCCC
TTAATTCCACGGAATTATCCACCCGAACACCAAGACCACGCACAAACGTG
CGGCCTAATCAAGGTAGTCCCTCGCGCACTACATCTTCTTCCTTTTTCTC
CACCTCCGTTTCCCATCTTCTAGTTAAGAGTTTTACACACACAGCAAACG
ACTGAAGATAGTGCATAGCAGGACAAAAGTACATTCTCGCCTATGCCATG
ATACGATCAAGCCAGGCAAAGCCCAAATCAATACTATCCTCCAAAACCAA
ATCCCGCTTGATCGAAACTCCGCCGAACGAAATGAGCACATAAAACGCCG
CAGCGCACGTGACGAACATGATAGGAAAAGTAATGGTGGGCGTCAAGTAC
CAGGGAGCCTTCTCGCCCGTCTCTCCCTCGAAGAATCCGAAGAAATACAG
AGACTTAAACCACTTCAACGACTTCTCCGTCCCCGTCATTCCCTCCTCAT
TCCGCATCCGTAACTCAGACCGCTGCGCATAATCCTGGGCGATCGACTTA
GAATCACGCAGCTTTTTCGGATCCACGTCCCGGAAAGACCTTGGGTTCAA
AAAGTTACCCGACGCCTCCAACACTTCAATGTCAAACTCCAACGGCGTGT
CCGGTCCCACTACAGGACTCACTCCCGTGCTCCCGTAGGCATACCACGGC
TGCACCGTCACTTTCGCCACCTCTCCCACACGCATGGAGCCCACAGCCGT
CTCAAACCCACCAATCATGGTCCCGTCCCCTTGCAAGAAACGAAAGTCTT
CCCCCCGACACAACACCTGCCCGTCCGCCGTGCGGCCTTCATACTTGACT
GCCACCTCCGCACCGGGCGTCACCAAAGGCCCGCCCCCCTCTCTAACAAT
TGTCTTGAGTACTCCTCCATCTCGCAGCAAGTCGCCCTCCAACTGCCGTG
GCGTAGTAGGTGCAGTTTCGTCCTCCAAGTCGAAGTACGAAGTGCTCTTT
CCCGGGTCCGGCTTCCGTCGTCCCAAGCCCATGGGTGGCGCGGGCGGCGT
GCCTCCCAACGGGGCCGATACAAAGGGCATGCTGGGCAAGCTGCCTTGCT
TCTTGGAGCCCACCTCATCTTTAATACTCATCAAAGCGGTACGACCGCGC
TTGAAGGAAAGGCTGCTTGGAGTGCTGCTGATGCGGCCGCCGGGCACGAC
GAGAAATGCTTGGCTTGCGTTCAGGAGGAGCAGCAGCAGGCCCGCTTTTC
TTACAATGCTCGCCATGGAGTAAGTGTCCTGTAAGCGTGCATTCGTGTGT
GTGTGTATGTGCGCGCGCGCGTATGTGAGTGAGTGTGTGTGTAAGTTTGT
ATATCTGTGTGACTTGTGGGCCTGAAAAGGTGGTACCGAGCAATATCGGA
ACAGTTGCTGTGGTACCGATCACTAAACTAGAGTACAACTGATTTATACA
TGGCCAACTCAGTCCTGAATCATTGCGAACAACAATCTCACGAAAAATGG
CAGAATACAGAGCTTAAAAATTGCACAGGACTTGTAGGTGGAGCGGAACA
ATTTTCATTGAATTCCTTACACGGACCCATCTCTGACCTCAACCATGCCA
TCCATACAATACCACAGCTACGACATGAAAACCCTTCTCGTCCTGGTCCT
GCTGGGGATGCTATTTGAGGTGGAGTCGTATCGgtaagatatgctgacct
ccccaccccaaccccacctccgcttcctcttgaggaggtcactagcactg
tttgtccttttaggcgcccttcctttgtgctttgacggtatacatatgcc
tgtgctagtttcgtcctcctatttcatctctcatctgttacgataggcct
tccaactgtgcgtaacaaggaaatacaggctcctcttcaccttccctccc
cacctttctttccatgcgccggaccgccgcactacattacatttgtatac
cttttctcctcattgctgcactatcgttctagatctgatagaattctctt
cgcaattccgaaacaggataccgttcccttctgactttcctcctttcact
ccaacagtctcgtcgcaatttcgagacagaacatcgttcccttctgatat
tccttcctacacttccacagTCTCCTCCCTGCGATCCGCAAGCGCTGGCG
CCGCCGCCGGCCACCCCCCACCGTGGTCCTGCCTCAGCTTGATTCCTTTA
AACTCATTCCCAGTCAAAAAACTGTGCAAGCACAAGGCTGGCGCGACACC
TTAGTGAGCATCGGCAACGAGCTACATCGTTCAAGCAGCCTCCCGACCAA
GGCCCAAAAAGAGACGATTCGAAGTATTGCCTTGGCGCTCGAAACCGTTC
AACCCACCCCTACAAAAGCACCGGCATTATCTCCTTTTAATCAGGGGCGA
TGGGCCTTGCTCTACACAGACGCACCGGGGATAAGCTCAGGGCGGATAGG
TCCGTTCGGATTGATCAAAGGAAGAGTGTTCCAAGAAGTGGATTTGACAA
CGCGGGGGTATGTGAATATATTGGAGGTAAGCAAGCCGGGACAGGCCCCT
TGGTTGGAAGCGAAGCTGACCGCGGAGTTTCAGGTAGTTGATGATACGGA
TTGGGAAGTGACGTTTAAGGACGTTGTCGGGATGTTGCGGGGAAAGCAAG
TAGTGAAGCAGGTGTTCAGCGGGGTGAGTCGGGTCTGGACGCATACTTAT
TTGGATAGGGAGGGAGGGGTAAGGATTATGAGAGCACGGAGACCGGAGAA
GAGGCCGGAGGACGCGTTTTTGTTTGTGCTAGTGCGACGGAAGGAGAGGG
AGAGGGAGGAGGGGGAAGGACGGTGAGGATAGGAAGAGGAGATGAGATAG
AGTAAAGTGCAAAAGTGTAGTGTATATTGTGCGAGGGTGTCAATTTTCCA
GTGAGTTTATAAATAAGTGTGTTGGACCTTTGTCGATGTCGTTGGCGTGG
TGATGGATGGCGATGGATGAGAAGCAAATTGATTCGCTGAATAGCAGTAG
CAGTAGGAAACAAGCAAAAACACAATTTAAAGAGAAGGTCGGGTTATCGT
TTTGGAAGCCGAAATTCAAGATAGATTAGATAAATGAGGAATCAGACAAG
GAAC
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protein sequence of NO14G01920.1

>NO14G01920.1-protein ID=NO14G01920.1-protein|Name=NO14G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MPSIQYHSYDMKTLLVLVLLGMLFEVESYRLLPAIRKRWRRRRPPPTVVL
PQLDSFKLIPSQKTVQAQGWRDTLVSIGNELHRSSSLPTKAQKETIRSIA
LALETVQPTPTKAPALSPFNQGRWALLYTDAPGISSGRIGPFGLIKGRVF
QEVDLTTRGYVNILEVSKPGQAPWLEAKLTAEFQVVDDTDWEVTFKDVVG
MLRGKQVVKQVFSGVSRVWTHTYLDREGGVRIMRARRPEKRPEDAFLFVL
VRRKEREREEGEGR*
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Synonyms
Publications