NO14G01910, NO14G01910 (gene) Nannochloropsis oceanica

Overview
NameNO14G01910
Unique NameNO14G01910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1154
Alignment locationchr14:589941..591094 +

Link to JBrowse

Properties
Property NameValue
DescriptionNucleic acid-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:589941..591094 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR013907Sds3
Homology
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BLAST of NO14G01910 vs. NCBI_GenBank
Match: EWM24622.1 (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 1.600e-59
Identity = 138/214 (64.49%), Postives = 152/214 (71.03%), Query Frame = 0 
Query:    1 MQVENIQGLYEYEVLEAEGSYKAAMDELKTRLLDTMEQRVKRLEEDXXXVMKQLERVGQTRMLRSKSVFRADGHLEAEGLNRAGARAGVGEGGGEVVGGNVSMFLSDGEIKDDLRQISTDLAERARSYYDSQSDVMVEVSVEDNCLHYNDHCLLKGESIIFTSMLSGEDFVGRIASVRPHEILVKLSDGTKARIHMSYLRNGRIKLKCEGDATE 215
            MQVENI+GLYEYEV+EA                             XXX      RVGQTR+LRSK+V RA    E  G    G    VG  GG    GNVSMFLSDGEIKDDLR IS DLAERAR+YYD+QSD MVEVSVEDNCLHY +HCLLKGESI+FTSMLSGEDFVGRIASVRPHE+LV+LSDGTKARIH++YLRNGRIKLK + D+TE
Sbjct:  138 MQVENIKGLYEYEVMEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVGQTRLLRSKNVLRA----EDPGDPLQG--GAVGRVGGGSTAGNVSMFLSDGEIKDDLRVISKDLAERARAYYDAQSDSMVEVSVEDNCLHYKEHCLLKGESIVFTSMLSGEDFVGRIASVRPHELLVRLSDGTKARIHLNYLRNGRIKLKTDSDSTE 345
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BLAST of NO14G01910 vs. NCBI_GenBank
Match: GBG27097.1 (Sin3 histone deacetylase corepressor complex component SDS3 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 87.0 bits (214), Expect = 7.600e-14
Identity = 61/212 (28.77%), Postives = 107/212 (50.47%), Query Frame = 0 
Query:    1 MQVENIQGLYEYEVLEAEGSYKAAMDELKTRLLDTMEQRVKRLEEDXXXVMKQLERVGQTRMLRSKSVFRADGHLEAEGLNRAGA--------RAGVGEG-GGEVVGGNVSMFLSDGEIKDDLRQISTDLAERARSYYDSQSDVMVEVSVEDNCLHYNDHCLLKGESIIFTSMLSGEDFVGRIASVRPHEILVKLSDGTKARIHMSYLRNGR 204
            ++++  + LY Y+V  A  SY  +  ++++++   +E+ +KRL         Q  R G       ++     G ++ +G + +GA        RA V  G G E +G N   F+++  I DDLR I  D   RA ++          V VED  L+Y +H L K + ++  + +S E   G I ++   E++VKL DG+ +R+ ++YLR+GR
Sbjct:  104 LRIKEAEALYAYDVKAANESYDNSYRDVQSKIAGEVEESIKRL---------QALREGMAASDGDEATDEGAGGMDLDGESNSGAPSAEGPSKRASVPGGYGSESLGMN--FFMTENSIYDDLRAIQQDWKSRAETFLSQGEAAKECVRVEDGVLYYEEHILEKDQDVVCYTEVSKEQIQGTIQNINASEVIVKLLDGSLSRVLITYLRSGR 304
The following BLAST results are available for this feature:
BLAST of NO14G01910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24622.11.600e-5964.49Nucleic acid-binding protein [Nannochloropsis gadi... [more]
GBG27097.17.600e-1428.77Sin3 histone deacetylase corepressor complex compo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002385NSK002385Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01910.1NO14G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590234gene_5762Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100117g12gene5856Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01910.1NO14G01910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01910 ID=NO14G01910|Name=NO14G01910|organism=Nannochloropsis oceanica|type=gene|length=1154bp
ATGCAGGTGGAGAATATTCAGGGGTTGTATGAGTATGAGGTGCTGGAGGC
GGAGGGGTCTTACAAGGCTGCGATGGATGAGTTGAAGACGCGGTTGCTCG
ACACGATGGAGCAGCGGGTGAAGAGGTTGGAAGAGGATAGAGAGAGGGTG
ATGAAGCAATTGGAGAGGGTGGGACAGACGCGTATGTTGCGGAGCAAGAG
TGTCTTCCGGGCAGACGGCCACCTGGAAGCGGAGGGTTTGAATAGGGCGG
GAGCACGGGCGGGAGTAGGGGAGGGAGGTGGGGAGGTAGTGGGGGGGAAT
GTGAGCATGTTTTTGAGTGATGGGGAGATTAAGGATGACTTGAGGCAGAT
TTCGACGGATTTGGCGGAGAGGGCTCGGTCGTATTATGACTCCCAGTCTG
ATGTAATGGTGGAGGTGAGTGTGGAGGATAACTGCTTGCATTACAACGAC
CACTGTCTATTGAAGGGGGAATCGATAATTTTTACGTCCATGCTGAGTGG
GGAGGATTTCGTGGGGCGGATTGCCTCCGTAAGGCCGCACGAGATTTTGG
TGAAGCTTTCGGATGGGACCAAGGCTAGGATCCACATGAGTTATTTGAGG
AATGGGCGGATTAAATTGAAATGCGAGGGGGATGCCACGGAGGCATAGAG
ACGGGAGGGGGAAGGTGGGTGGAGGGAGTAATGGTTGGAGGGTGAGGGAG
GGAAGGAGCAAGATCATTGAAAGGATGATACGGAGCACGAATCTGCTATT
TGAGAGACGCGAGGGAGGGTGGTATGTGGTTGGAGAACGGAGGAGGATTC
CGAAATGTTTGGGCACAGAAGATAGAAGAGGGAAAGCAAAAGGAAATGTC
TTCTCCTTCTGAGTGGATGATAGAGCGAATTTGTGAGTGGGTGCGGTTGA
TCAAATTAGCAAATCAAAAGGAATGTACGTGTCTATGTGCTACTGTTGTG
TGGGCAGCATTCAGGGAATAGAAAAATGGCCACTTGACGATGGGGCGAAG
GAGAGTGAGAAGAGACAGGGAGAATGAATGACATATGAGGACACGCAAAT
AAATACTCAACAACGAGAGAAGGAAAGAAAGAGAGGACACGAGAATAACC
CCAGCCTGTCTTCCTTCCACGTCTCTCAAAGCAAAACAGCGAGCTTGAAA
GAGA
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protein sequence of NO14G01910.1

>NO14G01910.1-protein ID=NO14G01910.1-protein|Name=NO14G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MQVENIQGLYEYEVLEAEGSYKAAMDELKTRLLDTMEQRVKRLEEDRERV
MKQLERVGQTRMLRSKSVFRADGHLEAEGLNRAGARAGVGEGGGEVVGGN
VSMFLSDGEIKDDLRQISTDLAERARSYYDSQSDVMVEVSVEDNCLHYND
HCLLKGESIIFTSMLSGEDFVGRIASVRPHEILVKLSDGTKARIHMSYLR
NGRIKLKCEGDATEA*
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Synonyms
Publications