NO14G01810, NO14G01810 (gene) Nannochloropsis oceanica

Overview
NameNO14G01810
Unique NameNO14G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length483
Alignment locationchr14:557828..558310 -

Link to JBrowse

Properties
Property NameValue
DescriptionMajor facilitator superfamily
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:557828..558310 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR020846MFS_dom
IPR011701MFS
Homology
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: KUG00139.1 (Major Facilitator Superfamily (MFS) [Phytophthora nicotianae])

HSP 1 Score: 123.2 bits (308), Expect = 7.100e-25
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 0 
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   49 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 191
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: ETK96425.1 (hypothetical protein L915_00855, partial [Phytophthora parasitica])

HSP 1 Score: 121.7 bits (304), Expect = 2.100e-24
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 0 
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A  + G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   63 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVTICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 205
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: ETP20819.1 (hypothetical protein F441_05543 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 121.7 bits (304), Expect = 2.100e-24
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 0 
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A  + G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   49 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVTICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 191
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_012206881.1 (hypothetical protein SPRG_11309 [Saprolegnia parasitica CBS 223.65] >KDO22357.1 hypothetical protein SPRG_11309 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 121.3 bits (303), Expect = 2.700e-24
Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = 0 
Query:   16 NEIAFTFLFFL----NLLNYIDRGIIPGASEEFSAFVSDSLD--TNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            + +  T++FFL    NLLNY+DRGIIPGA  +F  F+  +++        Y+GLL S+FI  ++   + FG++  F+ PF++VGVGL+VW +A  + G A+Q  S+ +L A R+LSG+GE+ FQC+APPFI D
Sbjct:   11 SSVTTTWIFFLFCLINLLNYVDRGIIPGAPTQFQYFIKATMNITVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGVGLLVWCVAVLVCGAAKQTNSFYVLLAGRILSGIGESSFQCIAPPFIDD 143
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_008604000.1 (hypothetical protein SDRG_00307 [Saprolegnia diclina VS20] >EQC42577.1 hypothetical protein SDRG_00307 [Saprolegnia diclina VS20])

HSP 1 Score: 120.2 bits (300), Expect = 6.000e-24
Identity = 60/128 (46.88%), Postives = 88/128 (68.75%), Query Frame = 0 
Query:   21 TFLFFL----NLLNYIDRGIIPGASEEFSAFVSDSLD--TNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            T++FFL    NLLNY+DRGIIPGA  +F  F+  +++        Y+GLL S+FI  ++   + FG++  F+ PF++VGVGL+VW +A  + G A+Q  S+ +L A R+LSG+GE+ FQC+APPFI D
Sbjct:   20 TWIFFLFCLINLLNYVDRGIIPGAPTQFQYFIKATMNITVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGVGLLVWCVAVLVCGAAKQTNSFYVLLAGRILSGIGESSFQCIAPPFIDD 147
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: CEL96623.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 120.2 bits (300), Expect = 6.000e-24
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 0 
Query:   22 FLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGGGVQ 149
            +   +N+  Y+DRGIIPGA +EFS F+  +      D++ GLLQSAFI G S++++ FGH++H+ S F ++GVGL +W  A  LSGF+    SY LL  AR+LSGVGEA +  +AP FI D  G  Q
Sbjct:   12 YFTLVNIFIYLDRGIIPGAPQEFSDFIIKNELGTATDVWFGLLQSAFIAGLSVSSLVFGHLLHYFSGFWLMGVGLTMWSCAVLLSGFSGVVESYSLLLVARILSGVGEASYASIAPVFICDNAGDKQ 138
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_009837341.1 (hypothetical protein H257_11957 [Aphanomyces astaci] >ETV73136.1 hypothetical protein H257_11957 [Aphanomyces astaci])

HSP 1 Score: 119.8 bits (299), Expect = 7.900e-24
Identity = 58/142 (40.85%), Postives = 85/142 (59.86%), Query Frame = 0 
Query:    1 MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            M  +P   +T   W     F  L  +N +NY DRGI  GA  +F  F+  S +T  P   +GLL S+F+  F+++   FG++     PF+++ +GL VW++A A+S  ++ A S++LL   R LSGVGEA FQC+APPFI D
Sbjct:    1 MPSEPMTSTTMPPW----IFVLLCAINFVNYFDRGITSGAPAQFQYFIQVSHNTTDPGALLGLLSSSFVTTFAISIPLFGYLAMTTKPFRLISIGLAVWVVAVAISSISKSANSFELLLLGRFLSGVGEASFQCIAPPFIND 138
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: ETL49790.1 (hypothetical protein L916_00844, partial [Phytophthora parasitica])

HSP 1 Score: 118.6 bits (296), Expect = 1.800e-23
Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 0 
Query:   19 AFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A  + G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   80 AIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVTICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 203
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: ETP26424.1 (hypothetical protein F441_00890, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 118.6 bits (296), Expect = 1.800e-23
Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 0 
Query:   19 AFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A  + G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   82 AIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVTICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 205
[Close]
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_002908241.1 (Major Facilitator Superfamily (MFS) [Phytophthora infestans T30-4] >EEY61324.1 Major Facilitator Superfamily (MFS) [Phytophthora infestans T30-4])

HSP 1 Score: 118.6 bits (296), Expect = 1.800e-23
Identity = 58/124 (46.77%), Postives = 85/124 (68.55%), Query Frame = 0 
Query:   19 AFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ + SY +L A R++SGVGEA FQC A PFI
Sbjct:   66 AIVLLCLINLVNYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQASQSYYVLMAGRLISGVGEASFQCTATPFI 189
The following BLAST results are available for this feature:
BLAST of NO14G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KUG00139.17.100e-2544.76Major Facilitator Superfamily (MFS) [Phytophthora ... [more]
ETK96425.12.100e-2444.06hypothetical protein L915_00855, partial [Phytopht... [more]
ETP20819.12.100e-2444.06hypothetical protein F441_05543 [Phytophthora para... [more]
XP_012206881.12.700e-2445.11hypothetical protein SPRG_11309 [Saprolegnia paras... [more]
XP_008604000.16.000e-2446.88hypothetical protein SDRG_00307 [Saprolegnia dicli... [more]
CEL96623.16.000e-2448.03unnamed protein product [Vitrella brassicaformis C... [more]
XP_009837341.17.900e-2440.85hypothetical protein H257_11957 [Aphanomyces astac... [more]
ETL49790.11.800e-2346.77hypothetical protein L916_00844, partial [Phytopht... [more]
ETP26424.11.800e-2346.77hypothetical protein F441_00890, partial [Phytopht... [more]
XP_002908241.11.800e-2346.77Major Facilitator Superfamily (MFS) [Phytophthora ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01810.1NO14G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01810.1NO14G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01810 ID=NO14G01810|Name=NO14G01810|organism=Nannochloropsis oceanica|type=gene|length=483bp
ATGTCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGACCAATGA
GATAGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACATCGATC
GGGGCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTCTCCGAC
TCACTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCAATCTGC
ATTCATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATGTCATTC
ATTTCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTATGGATC
CTCGCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTACCAATT
GCTATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGATTTCAGT
GTGTGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGAGTGCAGGAAGGT
GGATTGCGTTTTTTTACACGGCGATTCCGTTAG
back to top

protein sequence of NO14G01810.1

>NO14G01810.1-protein ID=NO14G01810.1-protein|Name=NO14G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSD
SLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWI
LAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGGGVQEG
GLRFFTRRFR*
back to top
Synonyms
Publications