NO14G01810, NO14G01810 (gene) Nannochloropsis oceanica

Overview
NameNO14G01810
Unique NameNO14G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length483
Alignment locationchr14:557828..558310 -

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Properties
Property NameValue
DescriptionMajor facilitator superfamily
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:557828..558310 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_005855539.1 (major facilitator superfamily, partial [Nannochloropsis gaditana CCMP526] >EKU20821.1 major facilitator superfamily, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.5 bits (641), Expect = 1.700e-63
Identity = 122/145 (84.14%), Postives = 132/145 (91.03%), Query Frame = 0
Query:    1 MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGG 146
            MSRDPRLGSTQ WWTNE+AFTFLFFLNLLNYIDRGIIPGA+EEFS FV+ SL T++PDL+VGLLQSAFIVGFSLAAI FGHVIH+V+PFKMVGVGLV+WI+A ALSG A    SY LLC ARMLSGVGEAGFQCVAPPFILDLGG
Sbjct:   48 MSRDPRLGSTQAWWTNELAFTFLFFLNLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVGEAGFQCVAPPFILDLGG 192          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: EWM24619.1 (spinster-like protein [Nannochloropsis gaditana])

HSP 1 Score: 251.5 bits (641), Expect = 1.700e-63
Identity = 122/145 (84.14%), Postives = 132/145 (91.03%), Query Frame = 0
Query:    1 MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGG 146
            MSRDPRLGSTQ WWTNE+AFTFLFFLNLLNYIDRGIIPGA+EEFS FV+ SL T++PDL+VGLLQSAFIVGFSLAAI FGHVIH+V+PFKMVGVGLV+WI+A ALSG A    SY LLC ARMLSGVGEAGFQCVAPPFILDLGG
Sbjct:   48 MSRDPRLGSTQAWWTNELAFTFLFFLNLLNYIDRGIIPGAAEEFSDFVAHSLGTSSPDLFVGLLQSAFIVGFSLAAIVFGHVIHYVAPFKMVGVGLVIWIIATALSGLAHHVASYYLLCIARMLSGVGEAGFQCVAPPFILDLGG 192          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_009040792.1 (hypothetical protein AURANDRAFT_38972, partial [Aureococcus anophagefferens] >EGB04540.1 hypothetical protein AURANDRAFT_38972, partial [Aureococcus anophagefferens])

HSP 1 Score: 129.4 bits (324), Expect = 9.900e-27
Identity = 75/134 (55.97%), Postives = 87/134 (64.93%), Query Frame = 0
Query:   16 NEIAFTFLFFL-NLLNYIDRGIIPGASEEFSAFVSDSLD---TNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGG 146
            NE A   L  + NL+NY+DRGIIPGA+ EF+ FV+ S +           G LQSAFIVGFSL  +  GH+IH  SPF M G GL+VWI AA ++G AR   SY LL  ARMLSGVGEAGF  V  PFI D GG
Sbjct:    9 NEKAIMVLLIVTNLINYLDRGIIPGANGEFTDFVAKSRELGGKGGASAAFGALQSAFIVGFSLTCLGVGHLIHTRSPFGMCGRGLIVWIFAAVVAGLARSTQSYSLLLLARMLSGVGEAGFVTVGGPFIQDAGG 142          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: CBJ29989.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 62/123 (50.41%), Postives = 83/123 (67.48%), Query Frame = 0
Query:   20 FTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            FT L  +NL+NY+DRG+IPG SEEF+ F+  +L T+ PD+++G+LQS FI+GFS A   F  +    SPF ++  GL +W  AA  +G A+  GSY +L  AR+LSGVGEA F  V PP I D
Sbjct:   21 FTLLAVVNLVNYLDRGVIPGGSEEFNGFIQKTLHTDRPDVFLGILQSGFILGFSAACFVFPSLARRRSPFSLMAAGLGMWCGAAVFAGVAKPLGSYAVLLMARLLSGVGEASFVTVVPPLITD 143          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: OQR91600.1 (Major Facilitator Superfamily (MFS) [Achlya hypogyna])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 63/140 (45.00%), Postives = 91/140 (65.00%), Query Frame = 0
Query:    5 PRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            P   S+ T W     F     +NLLNY+DRGIIPGA  +F  F+  +++T       Y+GLL S+FI  ++   + FG++  F+ PF++VGVGL+VW +A  + G ARQA ++ +L A R+LSG+GE+ FQC+APPFI D
Sbjct:    8 PTASSSTTTW----IFFLFCLINLLNYVDRGIIPGAPTQFQYFIKSTMNTTVGQESFYLGLLASSFIASYAGFILLFGYLSIFMKPFRLVGVGLLVWCVAVLICGAARQAHNFYVLLAGRILSGIGESSFQCIAPPFIDD 143          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: OQR98913.1 (Major Facilitator Superfamily (MFS) [Thraustotheca clavata])

HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25
Identity = 63/128 (49.22%), Postives = 91/128 (71.09%), Query Frame = 0
Query:   19 AFTFLFF--LNLLNYIDRGIIPGASEEFSAFVSDSL--DTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILD 143
            ++ FL F  +NLLNY+DRGIIPGA  +F  F+  +L  D +   +Y+GLL S+FI  ++L  + FG++  FV PF+++G+GL+VW +A  L G A+ A S+ LL A R+LSG+GE+ FQC+APPFI D
Sbjct:    5 SWLFLLFCGINLLNYVDRGIIPGAPTQFQYFIERTLHVDVSQEGVYLGLLASSFIASYALFIMLFGYLSIFVKPFRLIGIGLLVWCVAMLLCGLAKPAQSFGLLLAGRILSGIGESSFQCIAPPFIDD 132          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: ETI56623.1 (hypothetical protein F443_00912, partial [Phytophthora parasitica P1569] >ETM02856.1 hypothetical protein L917_00811, partial [Phytophthora parasitica] >ETM56093.1 hypothetical protein L914_00842, partial [Phytophthora parasitica] >ETP54408.1 hypothetical protein F442_00866, partial [Phytophthora parasitica P10297])

HSP 1 Score: 123.2 bits (308), Expect = 7.100e-25
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   63 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 205          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: XP_008890519.1 (hypothetical protein PPTG_00775 [Phytophthora parasitica INRA-310] >ETN24455.1 hypothetical protein PPTG_00775 [Phytophthora parasitica INRA-310] >ETO85430.1 hypothetical protein F444_00919 [Phytophthora parasitica P1976])

HSP 1 Score: 123.2 bits (308), Expect = 7.100e-25
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   57 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 199          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: KUF81920.1 (Major Facilitator Superfamily (MFS) [Phytophthora nicotianae] >KUF98896.1 Structural maintenance of chromosomes protein 5 [Phytophthora nicotianae])

HSP 1 Score: 123.2 bits (308), Expect = 7.100e-25
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   49 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 191          
BLAST of NO14G01810 vs. NCBI_GenBank
Match: KUF96166.1 (Major Facilitator Superfamily (MFS) [Phytophthora nicotianae])

HSP 1 Score: 123.2 bits (308), Expect = 7.100e-25
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 0
Query:    1 MSRDP-RLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSDSLDTNT--PDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWILAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFI 141
            +S DP    ST      + A   L  +NL+NYIDRGIIPGA E+F+ F++D+L  +     +Y GLL SAFI  +S+ ++ FG+      PF+++ +G+ VW++A A+ G A+ A SY +L A R++SGVGEA FQC A PFI
Sbjct:   49 LSSDPDSASSTMVQVGKQGAIVLLCLINLINYIDRGIIPGAPEKFNQFITDTLGVSVLRQSVYFGLLTSAFIASYSIFSMVFGYFALTHRPFRIIALGMTVWVVAVAICGMAQAAESYYVLIAGRLISGVGEASFQCTATPFI 191          
The following BLAST results are available for this feature:
BLAST of NO14G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855539.11.700e-6384.14major facilitator superfamily, partial [Nannochlor... [more]
EWM24619.11.700e-6384.14spinster-like protein [Nannochloropsis gaditana][more]
XP_009040792.19.900e-2755.97hypothetical protein AURANDRAFT_38972, partial [Au... [more]
CBJ29989.11.100e-2550.41conserved unknown protein [Ectocarpus siliculosus][more]
OQR91600.11.100e-2545.00Major Facilitator Superfamily (MFS) [Achlya hypogy... [more]
OQR98913.11.100e-2549.22Major Facilitator Superfamily (MFS) [Thraustotheca... [more]
ETI56623.17.100e-2544.76hypothetical protein F443_00912, partial [Phytopht... [more]
XP_008890519.17.100e-2544.76hypothetical protein PPTG_00775 [Phytophthora para... [more]
KUF81920.17.100e-2544.76Major Facilitator Superfamily (MFS) [Phytophthora ... [more]
KUF96166.17.100e-2544.76Major Facilitator Superfamily (MFS) [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL140nonsL140Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR025ngnoR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01810.1NO14G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01810.1NO14G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01810 ID=NO14G01810|Name=NO14G01810|organism=Nannochloropsis oceanica|type=gene|length=483bp
ATGTCTCGGGACCCGCGTCTGGGCTCGACACAAACCTGGTGGACCAATGA
GATAGCATTCACCTTTCTGTTTTTCCTGAATCTTCTCAACTACATCGATC
GGGGCATCATCCCGGGGGCCTCTGAAGAATTCAGTGCCTTTGTCTCCGAC
TCACTCGATACGAACACCCCCGACTTGTACGTGGGCCTGCTTCAATCTGC
ATTCATCGTCGGATTTTCCTTGGCGGCCATCTGTTTTGGGCATGTCATTC
ATTTCGTTTCTCCCTTCAAAATGGTGGGTGTTGGGTTAGTCGTATGGATC
CTCGCCGCGGCCTTGAGTGGGTTCGCGCGTCAGGCAGGCTCCTACCAATT
GCTATGTGCAGCACGTATGCTGAGCGGGGTGGGCGAGGCGGGATTTCAGT
GTGTGGCGCCCCCATTTATTTTAGACTTGGGGGGGGGAGTGCAGGAAGGT
GGATTGCGTTTTTTTACACGGCGATTCCGTTAG
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protein sequence of NO14G01810.1

>NO14G01810.1-protein ID=NO14G01810.1-protein|Name=NO14G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MSRDPRLGSTQTWWTNEIAFTFLFFLNLLNYIDRGIIPGASEEFSAFVSD
SLDTNTPDLYVGLLQSAFIVGFSLAAICFGHVIHFVSPFKMVGVGLVVWI
LAAALSGFARQAGSYQLLCAARMLSGVGEAGFQCVAPPFILDLGGGVQEG
GLRFFTRRFR*
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Synonyms
Publications