NO14G01700, NO14G01700 (gene) Nannochloropsis oceanica

Overview
NameNO14G01700
Unique NameNO14G01700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3150
Alignment locationchr14:524711..527860 +

Link to JBrowse

Properties
Property NameValue
DescriptionBHLH transcription factor 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:524711..527860 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
IPR013767PAS_fold
IPR000014PAS
Homology
[Close]
BLAST of NO14G01700 vs. NCBI_GenBank
Match: ALR84570.1 (bHLH transcription factor 1 [Nannochloropsis salina])

HSP 1 Score: 386.7 bits (992), Expect = 1.400e-103
Identity = 255/362 (70.44%), Postives = 277/362 (76.52%), Query Frame = 0 
Query:  271 HQQAGYHQHTPILPRYDVAILPKPLPLSPVMLIPQPVVKQELLQVAQMGGSGSGGSVGGNCTDSMVGGGSSAKRGVSATQSCASTDGGTQDEDGMTEERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDQEHKIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHREIVLDFSEIFRSSHVPMAVVSIDGRILQCNDEFSRVTGYTNNKLTGVTLFSLAAPECLEELFKSIARLLSTAALDENNPAYFATAAARAAPLSQRGYQHANILLSLVRDEERRARAFHCCIVAPHQNHDGQRATEA 633
            HQ    H  TPILPR+DVAI+PKP P SP  LIP  VVK E   + ++ G GSG +   +        GS+AKRG S  Q   +++ G Q+EDGM++ERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLD +HK+                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX REIVLDFSEIFRSSHVPMAVVSIDGR+LQCN EFSRVTGYTN+KL GVTLF LAAPECLE+LFKSIARLLSTAALDE NPAYFATAAARA P S  GY+ ANILLSLVRDEE RARAFHCCIVAP +   GQ ATE+
Sbjct:  288 HQHLAIHHPTPILPRHDVAIMPKPTPCSPTTLIPPTVVKHE--SIIRVSGMGSGRTAASDA----FCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLS---GGGAGSPMTGFCKYNKAGIGVEGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREIVLDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLSTAALDEKNPAYFATAAARATPFSHPGYKEANILLSLVRDEEHRARAFHCCIVAPQRY--GQIATES 638
[Close]
BLAST of NO14G01700 vs. NCBI_GenBank
Match: EWM24640.1 (hypothetical protein Naga_100055g9 [Nannochloropsis gaditana])

HSP 1 Score: 190.7 bits (483), Expect = 1.400e-44
Identity = 105/160 (65.62%), Postives = 124/160 (77.50%), Query Frame = 0 
Query:  276 YHQHTPILPRYDVAILPKPLPLSPVMLIPQPVVKQELLQVAQMGGSGSGGSVGGNCTDSMVGGGSSAKRGVSATQSCASTDGGTQDEDGMTEERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDQEHKI 436
            +H  TPILPR+DVAI+PKP P SP  LIP  +VK E   + ++ G GSG +   +        GS+AKRG S  Q   +++ G Q+EDGM++ERKKRLRNEREQRRAHLITDQID+LKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLD +HK+
Sbjct:  360 HHHPTPILPRHDVAIMPKPTPCSPTTLIPPTLVKHE--SIIRVSGMGSGRTAASDA----FCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDNLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKL 513
[Close]
BLAST of NO14G01700 vs. NCBI_GenBank
Match: XP_002292480.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90455.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-7
Identity = 48/181 (26.52%), Postives = 73/181 (40.33%), Query Frame = 0 
Query:  362 EDGMTEERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDQEHKIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHREIVLDFSEIFRSSHVPMAVVSIDGRILQCNDEFSRVTGYTNNKLTG 543
            ED   +++++  RN REQ R+H ITD+I  LKGVL  +    +   ++  L +   YI+ L++R   LD+EHK                                                                 +D+  IF S  V +A+ S+DGR + CN+EF R+T YT  +L G
Sbjct:  628 EDESDKKKRRNERNLREQERSHRITDRIAELKGVLSEAGVHFKQ-DRYSTLVSVVNYIKQLQKRSQSLDEEHKKLLETIATADRLVNSNVNSGTTTVQTHMDALGENTSSSSNDDDEFLVFVQG--------------IDYKFIFASCGVALAIASVDGRFVDCNEEFLRITDYTRKELLG 793
The following BLAST results are available for this feature:
BLAST of NO14G01700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
ALR84570.11.400e-10370.44bHLH transcription factor 1 [Nannochloropsis salin... [more]
EWM24640.11.400e-4465.63hypothetical protein Naga_100055g9 [Nannochloropsi... [more]
XP_002292480.11.800e-726.52predicted protein [Thalassiosira pseudonana CCMP13... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002369NSK002369Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01700.1NO14G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590177gene_5740Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100055g9gene5840Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01700.1NO14G01700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01700 ID=NO14G01700|Name=NO14G01700|organism=Nannochloropsis oceanica|type=gene|length=3150bp
TCTCATATATGATCAACTCGTCTTCTTTTGGGGGGGACTCGACTGTGGGG
TTGTGGGGCCTTGGTGTCCGGGTTTTCGCTTGGTGTGGTGTATGCCTACA
AGGCAAGTTGCGCCTGGGCAATCGAGGCCCATTTGGTTGGATCATGCCAT
GGGGTCCACAGAAAAACGCTCTCCGAAGTGTGTTGAGCTTGCTCTCTTGT
GACTGGGTACGTGTCGCCGCGCAAGTGCTTTTGTATCGGTTCTTTCCCTC
ATGTGCATCCTCTGCGTCGCCCCTCCACCTGCCCTAGCATAAATATTCCC
GCTGTCTCAAATTCGGTCAACAAGGTGGTTGCCTCACATCTACAGCCACC
CGGGCGAGGCAGACGACACAAAGACCCCGGAAAAACACATATCTCCCCCC
AGATCCATTTCCGCACTGGTGTCGTGTTGAAATCCTGTGCCTTCCTGATT
CACCCCACCACACCCAACTACCCTTTCTCACCCACAGGCACATCCATGAG
ATGGACTGGGGAGGGCACCCGTCAGAGCTTGGTGACTCAAAGTCACAAAC
GGCCTCAATGACGACAACGACGACGACGGCGGGAGCGACTACTTCAGCTC
CGACTGTGCACAACATGCACCACCGCCAACTTCCATCCTCTCAGCATGCC
CTCGGCTTTGGCACTTCTTCTATTGCTGAAGCTGGTGGCGGTGGCAGTGG
AAGTGGCGGCGCAAAATTTCATTGGCCTTTTTCCAGTGCCGGCGGAGGCG
CTAAAGGCGAGGCGGGAACTAACTGCAACGACATCAGACAGCAGCGGCAG
CAGCAGCAGCAGCAGCCATCACTTTCGCAAGAAGAGATGCCAGATTCAAA
TTTCGACGGTGGTGCGATGGATTGGAACAGCGATGTGGACGACGACATAG
GGTCGGGCGTGTCGGAAGGGTTATCGCCTCCTTCCATGACACGAGACCGT
CATTCCTCGGCCCCCTTGGCACCCGCACCCGTGTTTGGGAGCGATATTAA
ACGGGGGGGGGATCTTCCACAGAGAATAGCTCCTCATGCGGCATCATTAC
TACCACAAGCACCGGTCCAACTGCGACAGAAGCCGTCGCAGCAACCCTCT
TCCTCCCTCTTCTGTCCCTCAAAGTTTATGCCCACGCCAATGCAGCAGCG
GCACTACCAGCAACAGCAACATCATCAACACCAACAATATGAGCAGCAAC
AAGGACAGAGGCAGCAACAACAACTACCACAGCAGCAGCAACAACAATCA
CTGCAGCAGCAATTTTGCAGGCCTTCAGGTGCCTCGCACCTGCAGAATCC
ACAGCAGCACCATCAGCAGGCGGGCTACCACCAGCACACACCCATCCTGC
CCCGATATGACGTGGCCATTCTGCCCAAGCCTTTGCCCTTGAGCCCGGTC
ATGCTCATTCCGCAGCCGGTGGTAAAGCAGGAGCTGCTGCAAGTTGCGCA
AATGGGCGGCAGTGGGAGCGGTGGAAGTGTTGGTGGCAACTGCACCGACA
GCATGGTTGGTGGTGGTTCCTCCGCGAAGCGGGGGGTCTCAGCCACACAG
AGTTGTGCCAGCACAGATGGGGGCACACAAGACGAGGATGGTATGACGGA
GGAACGGAAGAAGCGGCTGCGGAATGAGCGGGAGCAGCGGCGGGCACATC
TGATCACGGACCAGATCGACAGCCTCAAGGGTGTGCTTGAGAACAGCAAT
TTCCCCCTTCGCTCCACCTCCAAGTTCGATATATTGGCGGCTTGCGACGA
GTACATCCAGCACCTCCGCCAGCGCAAGAACTGTCTAGACCAGGAGCACA
AGATAGGTGGAAGTAGCAGCGGCGGCGGCGGGAGTGGCAATAACAGTGTC
CGCAGTGGGGGCAGCGGTGGTGGGGGCGGGGGCGGGGGGCCGTCTTCCTC
CTCTGTGAGCTCGGCGTCAGAGGATGGAGAGAGCATGAGCAGCGGAGGTG
GAGGCAGAGGTATGTCGGCGGCAGGCGCAGCGCATCGGGAGATAGTCCTC
GATTTCAGCGAGATCTTCCGGTCTTCGCACGTGCCCATGGCCGTGGTCTC
GATCGATGGACGTATCCTGCAGTGCAACGACGAATTTAGTCGCGTGACCG
GATACACCAACAACAAGCTCACGGGCGTCACACTTTTTAGCCTAGCCGCC
CCCGAGTGCTTGGAGGAGCTCTTCAAATCCATCGCCCGCCTCCTCTCAAC
GGCCGCCCTGGACGAGAATAACCCAGCCTATTTTGCAACGGCCGCCGCGC
GTGCCGCACCTCTCTCGCAGCGAGGCTACCAACATGCCAACATTCTGCTC
TCCCTGGTGCGTGACGAGGAGCGCCGCGCTCGGGCTTTCCATTGCTGTAT
CGTAGCTCCTCACCAGAATCATGACGGGCAACGGGCAACAGAGGCTGAGG
CGGCGGCAGACTCGGCCATGTCATGACACCGTGGAAGTGGATAAGAGCAA
AATGAGGATGGGGCGGGTAATGGCCTATGTAAATTCAATTTTATAAATAG
AAAATAGGACTGCTTGGAGAGTGGATGAAGTCCAAGAGCTAAATAGACAG
CCAGGGCACATCAAGCGGGCAATGGGGCAAATTTGCATCACATAGGAAAA
ATATAACCTGTTCGAAAGCAGACTGCAAGCTTGAGACACCAATTGGTTGT
CCGTGTGCAGCAAGAGGGAGGTTTAGCAGCCAAGGGACTTCAGCGTCGTC
TTGGTGCGGAGGAAAACGGACAGAGAGAAGGGCAAAAGAGACTGTGAGTT
CTTTCATTTGTTTGCATGGGATCCGTGGTACCTTGTAAAGCACGAGGAAG
GGAACGTTTTCACTCGACGCACGGAATACCTACCACCGCATCAGGCGAAT
GCCCTGGCGCAGCTGTTTTGTTTGTACCGATGTGCGCCTTTTATCTTTAT
CTGATGGAGGTTGAGGTAAGCAAGAAAGTTAAAAGCGAGAGAGGGGATTC
GCTACCCAAGCAATAAAATTTAATGGACGAATGCTCTGTGTTTCTTAAAC
TTATGGAACGGTTGGGAAGAGAGTGTGTGTCCGCGCGAGACGACACACGT
AAGGTTTTGGCGGGGTGATTAATAAATTTGATAGCGCTTTCTTTCTTGGC
GTGCGCCATCTTGTGCGACGCAGGGAATGATGAAAACATTTGAATCAATC
back to top

protein sequence of NO14G01700.1

>NO14G01700.1-protein ID=NO14G01700.1-protein|Name=NO14G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MDWGGHPSELGDSKSQTASMTTTTTTAGATTSAPTVHNMHHRQLPSSQHA
LGFGTSSIAEAGGGGSGSGGAKFHWPFSSAGGGAKGEAGTNCNDIRQQRQ
QQQQQPSLSQEEMPDSNFDGGAMDWNSDVDDDIGSGVSEGLSPPSMTRDR
HSSAPLAPAPVFGSDIKRGGDLPQRIAPHAASLLPQAPVQLRQKPSQQPS
SSLFCPSKFMPTPMQQRHYQQQQHHQHQQYEQQQGQRQQQQLPQQQQQQS
LQQQFCRPSGASHLQNPQQHHQQAGYHQHTPILPRYDVAILPKPLPLSPV
MLIPQPVVKQELLQVAQMGGSGSGGSVGGNCTDSMVGGGSSAKRGVSATQ
SCASTDGGTQDEDGMTEERKKRLRNEREQRRAHLITDQIDSLKGVLENSN
FPLRSTSKFDILAACDEYIQHLRQRKNCLDQEHKIGGSSSGGGGSGNNSV
RSGGSGGGGGGGGPSSSSVSSASEDGESMSSGGGGRGMSAAGAAHREIVL
DFSEIFRSSHVPMAVVSIDGRILQCNDEFSRVTGYTNNKLTGVTLFSLAA
PECLEELFKSIARLLSTAALDENNPAYFATAAARAAPLSQRGYQHANILL
SLVRDEERRARAFHCCIVAPHQNHDGQRATEAEAAADSAMS*
back to top
Synonyms
Publications