NO14G01590, NO14G01590 (gene) Nannochloropsis oceanica

Overview
NameNO14G01590
Unique NameNO14G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1602
Alignment locationchr14:503725..505326 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:503725..505326 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO14G01590 vs. NCBI_GenBank
Match: EWM24642.1 (hypothetical protein Naga_100055g20 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 4.900e-67
Identity = 155/332 (46.69%), Postives = 209/332 (62.95%), Query Frame = 0 
Query:   14 QLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQWNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGNLMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLVEAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGRGRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDVAERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGK 346
            +L   +LLM++LQ+VPASRDE  ++ RLTE+LVVV+Q+RAIQQL   LS  +    +    ALIG+Q+R+AARAVL VL D RGC+ WN++Q A+P  WVTS   VRDA+ QA++    DGE+V++V+HMEK+ C N+M+LNNLMLAMD  +    +  L  T FF+FE+DPP   ++DGG+RSHL E ID RC PGP LNL+AFFGR  PITF P+P D   DT+PL  T+P   +  +  W  +W       L++T KLL +  +G     +     +A R+R V +       GS       + G E   C      +ETL T+VRGGK
Sbjct:   18 RLASCILLMIMLQMVPASRDERQLRTRLTEALVVVNQSRAIQQLATKLSAEI---RREVSFALIGSQSRSAARAVLGVLTDRRGCLHWNSSQ-AEPDAWVTSRAKVRDAIAQAAEVRRTDGEVVLVVEHMEKLHCDNIMYLNNLMLAMDRSTDSGVD-PLPTTLFFLFEEDPPPGVLMDGGVRSHLAEGIDERCRPGPELNLKAFFGRTVPITFLPVPDDVPRDTQPLCSTIPL--KHDKASWASSWLSDSHWSLNLTGKLLVVAAMG----WVANVCVSAARRRIVGKAVSVTTSGSE------MEGGESKNC---RATLETL-TSVRGGK 328
The following BLAST results are available for this feature:
BLAST of NO14G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24642.14.900e-6746.69hypothetical protein Naga_100055g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01590.1NO14G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590139gene_5730Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100055g20gene5829Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01590.1NO14G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01590 ID=NO14G01590|Name=NO14G01590|organism=Nannochloropsis oceanica|type=gene|length=1602bp
ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC
CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC
GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG
GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA
CCGCTTGAgtaagtgtggagtttcttaacctctcctttccaagtttccca
ttcatatacatgtacctctcataccagcccggtcatgctcacacctacaa
tatgttgtcttttctactccacgcctctcccaacaccatgccgtcatgtc
tctatacaccactgaatacacagCCGAGAGCCTGGTGGTTGTGAGCCAAG
CTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTCT
GGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGC
GGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAAT
GGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGGC
GGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGG
GGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATC
TCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATTG
AGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAGA
CCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTGG
AAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCC
TTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACGC
TTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCG
GGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGAT
CTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGAC
CTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTG
CCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAG
CTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAGT
GGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGCG
CCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGA
AAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAA
GAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCAT
TTACAAAGCAAAAGAATGAATACGAAGGAGGAAGAGAAGCATGTGAATGT
ATATGCGAATACGTCGCCACTTTCATGTACGCTTGTTAATTTGTATATCC
CCCAGTCAGAAAAAAGGAAAACCCCAAAAGAAGCAAAAAATATAATAGTC
GT
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protein sequence of NO14G01590.1

>NO14G01590.1-protein ID=NO14G01590.1-protein|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MMAAHRHIWSVPRQLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQ
ARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQ
WNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGN
LMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLV
EAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGR
GRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDV
AERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGKDTPAS
ATRRHAAQERTDEAGGGKATNGGVVKPKKASVAKRAASPKPGHRAPR*
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Synonyms
Publications