NO14G01530, NO14G01530 (gene) Nannochloropsis oceanica

Overview
NameNO14G01530
Unique NameNO14G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1801
Alignment locationchr14:480933..482733 -

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Properties
Property NameValue
DescriptionCCT domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:480933..482733 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
Homology
BLAST of NO14G01530 vs. NCBI_GenBank
Match: EWM24669.1 (CCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 224.9 bits (572), Expect = 5.300e-55
Identity = 212/452 (46.90%), Postives = 235/452 (51.99%), Query Frame = 0
Query:    1 MSTLSMQAAPSLGHPMEKLLDNYMMAERGGGA--EEGGAGATFMVEDGGMISYTGVFMDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVSAAPEGD-KGEGWKMALLEGLEDFLKVEGAVPAGAAGSGGSRRFSFDLSNLDMQTLEQLAXXXXXXXXXXXXXXXXXXXXAEGLMAKGSLPVGTAAPFPSSGPRGNGNGSGLPLGNMRVKQ--EMPVDTASRSNSVSSLGTTAXXXXXXXXXDISDPVSNRSMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTPQTPHKAILTPXXXXXXXXXXXXXXXTNATMVNSPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 448
            MSTLS+ +APSLG  MEKL DNY  AERG GA  EE G  ATFMVEDGG+ISY G+F+DD                                           XXXXXXXXX  S AP  D KGE WK A+LE LEDFL+ EG +P  AAG+G +RRFSFDLSNLDMQTLEQLA                    AEG M K S P  + AP  SSG R +     LP G    ++  +  V    +    ++LG                 V N S+S                                               XXXXXXXXXXXXXX              XXXXXXXXXXXXXXX             G LVLP+IPKDG+ARIGIYTLEERK+RVARFQAKRGRR+WRKKIKYDCRKKLADNRPRVKGRFVRRDEEID
Sbjct:    1 MSTLSIHSAPSLG--MEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGGVGAPQANSIFNTSSGXXXXXXXXXXXSIAPGSDGKGEEWKNAVLESLEDFLQTEGGIP--AAGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTK-SPPASSMAPLLSSGARFHSVPDNLPAGFSHTQEGCKEHVVCDCKKTLTTALGEDG----------AGHSVPNASVS----------ASKNTGTGASCALEPLTKPQVKKGFAAASTPTGESSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 427          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: GAX11852.1 (hypothetical protein FisN_20Lh091 [Fistulifera solaris])

HSP 1 Score: 95.5 bits (236), Expect = 4.800e-16
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0
Query:  366 ATMVNSPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 448
            AT++ SP G+  TL L ++ KDG  RIGIY  + R+ R+ARF AKR +R+WRK+IKYDCRKKLAD+RPR+KGRFV+R +  D
Sbjct:  499 ATLLVSP-GSSTTLCLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKRTDMDD 577          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: GAX23885.1 (hypothetical protein FisN_20Hh091 [Fistulifera solaris])

HSP 1 Score: 95.1 bits (235), Expect = 6.300e-16
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0
Query:  366 ATMVNSPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEID 448
            AT++ SP G+  TL L ++ KDG  RIGIY  + R+ R+ARF AKR +R+WRK+IKYDCRKKLAD+RPR+KGRFV+R +  D
Sbjct:  499 ATLLVSP-GSSTTLSLELVNKDG--RIGIYLPDARRARIARFHAKRAKRIWRKRIKYDCRKKLADSRPRIKGRFVKRTDMDD 577          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: OEU15813.1 (hypothetical protein FRACYDRAFT_261853 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 87.0 bits (214), Expect = 1.700e-13
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 0
Query:  369 VNSPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDE 445
            V+S   +  T  + ++ KDG  RIGIY  E R++R+ARF AKR  R+WRK+IKYDCRKKLAD+RPR+KGRFV+R +
Sbjct:  629 VSSSAQSPPTFQMELLNKDG--RIGIYLPEARRLRIARFHAKRKMRIWRKRIKYDCRKKLADSRPRIKGRFVKRSD 702          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: XP_002290578.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92330.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.2 bits (204), Expect = 2.500e-12
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0
Query:  391 RIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRR 443
            R+GIY  EERK R+A+F +KR  R+WRK+IKYDCRKKLAD+RPRVKGRFV+R
Sbjct:  815 RVGIYLPEERKARIAKFHSKRKTRIWRKRIKYDCRKKLADSRPRVKGRFVKR 866          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: CBN75530.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 1.800e-10
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0
Query:  391 RIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEE 446
            RIGIYT +ER+  +ARF+ KRGRRVW+KKI+Y+CRK LAD R RVKGRFV+   E
Sbjct:  390 RIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPE 444          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: XP_002289027.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94463.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.9 bits (185), Expect = 3.900e-10
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  371 SPNGNGGTLVLP--------IIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEE 446
            S  G  G L LP        +  K+G  RIGIYT  ER V + +F AKR RRVW KKI+Y+CRK LAD R RVKGRFV+R+ +
Sbjct:  370 SGGGEKGVLTLPHSLSKYKEVYNKNG--RIGIYTPAERAVIITKFNAKRARRVWNKKIRYNCRKNLADRRLRVKGRFVKRNAD 450          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: OAE25686.1 (hypothetical protein AXG93_4368s1460 [Marchantia polymorpha subsp. ruderalis] >PTQ41644.1 hypothetical protein MARPO_0033s0056 [Marchantia polymorpha] >PTQ41645.1 hypothetical protein MARPO_0033s0056 [Marchantia polymorpha])

HSP 1 Score: 75.1 bits (183), Expect = 6.700e-10
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  386 KDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDE 445
            +DG  +IG YT+EERK+R+ R+Q KR +R + KKIKY CRK LAD+RPRV+GRF + DE
Sbjct:  446 EDGGFKIGRYTIEERKIRIHRYQQKRTQRNFNKKIKYACRKTLADSRPRVRGRFAKNDE 504          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: PTQ41643.1 (hypothetical protein MARPO_0033s0056 [Marchantia polymorpha])

HSP 1 Score: 75.1 bits (183), Expect = 6.700e-10
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0
Query:  386 KDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDE 445
            +DG  +IG YT+EERK+R+ R+Q KR +R + KKIKY CRK LAD+RPRV+GRF + DE
Sbjct:  446 EDGGFKIGRYTIEERKIRIHRYQQKRTQRNFNKKIKYACRKTLADSRPRVRGRFAKNDE 504          
BLAST of NO14G01530 vs. NCBI_GenBank
Match: XP_008617179.1 (hypothetical protein SDRG_12875 [Saprolegnia diclina VS20] >EQC29412.1 hypothetical protein SDRG_12875 [Saprolegnia diclina VS20])

HSP 1 Score: 74.7 bits (182), Expect = 8.800e-10
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0
Query:  392 IGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDII 450
            IG YT   RK+R+ +F  KR +R+W+K IKYDCRKKLAD+RPR+KGRFVR  E ++++
Sbjct:  230 IGAYTPAARKLRLEKFHEKRKKRIWKKSIKYDCRKKLADDRPRIKGRFVRVLENLNLV 287          
The following BLAST results are available for this feature:
BLAST of NO14G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24669.15.300e-5546.90CCT domain protein [Nannochloropsis gaditana][more]
GAX11852.14.800e-1659.76hypothetical protein FisN_20Lh091 [Fistulifera sol... [more]
GAX23885.16.300e-1659.76hypothetical protein FisN_20Hh091 [Fistulifera sol... [more]
OEU15813.11.700e-1357.89hypothetical protein FRACYDRAFT_261853 [Fragilario... [more]
XP_002290578.12.500e-1273.08predicted protein [Thalassiosira pseudonana CCMP13... [more]
CBN75530.11.800e-1067.27conserved unknown protein [Ectocarpus siliculosus][more]
XP_002289027.13.900e-1053.01predicted protein [Thalassiosira pseudonana CCMP13... [more]
OAE25686.16.700e-1061.02hypothetical protein AXG93_4368s1460 [Marchantia p... [more]
PTQ41643.16.700e-1061.02hypothetical protein MARPO_0033s0056 [Marchantia p... [more]
XP_008617179.18.800e-1058.62hypothetical protein SDRG_12875 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002350NSK002350Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01530.1NO14G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528498gene_5722Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100055g29gene5820Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01530.1NO14G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01530 ID=NO14G01530|Name=NO14G01530|organism=Nannochloropsis oceanica|type=gene|length=1801bp
ATGAGTACCTTGAGCATGCAAGCGGCCCCCTCGCTGGGCCACCCCATGGA
GAAACTACTGGACAACTACATGATGGCCGAGCGCGGGGGAGGAGCCGAGG
AGGGGGGAGCAGGTGCGACCTTCATGGTGGAAGATGGGGGCATGATTTCT
TACACGGGTGTCTTTATGGACGACGATGAGGATTTAGATGACGACGCCAG
CGCCTCGTCGACTGAAGCCGAAGTCATGGCCCACCTACACGCCGCCTTGG
GGGGCAGCGTCTCCAGCACCAAAGCGAGCGGCAGCAACAGCAGCTCGTCG
AGCTCCGGGAGCACCAGCACGAGCGGTGGCACCGTCAGCGCGGCGCCGGA
AGGGGACAAAGGAGAAGGATgtaagtaaggagtgttgatcttgacagggc
cgaggggtagatggatatttttaatagcacatgttctttccttccgtgtc
tcgtcatgttgcatctttttcgtctcacatggtggctttttgcatgctgg
gaaattgtgcccgcataatccagccgttattcgtgtgggtaaatcagttg
tcgcgtctccctagtcacgatattctgtgaagtgatatctggaatgacgg
tttaacaaagggggcgccgctgaggggtgggacaaatgcaaggaagccac
atgtatagcttcacccatttatctatccagaacttatttccccactccct
ttcgtcacagGGAAAATGGCCCTGCTGGAAGGTTTGGAAGACTTTTTGAA
AGTTGAAGGCGCTGTGCCGGCGGGCGCTGCCGGGAGTGGGGGCAGCCGCC
GTTTTTCGTTTGACCTGTCCAACCTAGACATGCAGACCCTGGAGCAGCTG
GCGGCTGGCGCCACCTCGGGCCTGTCCTCGCGCCGAGGCTCTTTTAGCTT
GACGATGCTGGAGGCGGAGGGACTGATGGCCAAGGGCTCTCTTCCTGTCG
GCACTGCGGCCCCATTTCCAAGCAGCGGCCCACGCGGCAACGGCAACGGC
AGTGGCTTGCCTTTGGGCAACATGCGGGTCAAGCAGGAAATGCCTGTGGA
TACAGCGAGCAGGAGCAATAGCGTATCTTCTCTGGGCACCACCGCTAGCA
ATAGCACCAGTGCTAGCAGCACCGACATCAGCGATCCCGTCAGCAACCGC
AGCATGAGTGGCGCCACCACCACCAGCAAAAACAAGGCCGTCAAGAAGGA
GACGTCCATCACTACCAGCGCCTCGCAGGCCACATCCAAGTCTCAGCCTA
AGAAGGGAGGATCTTCTCCGACGGGCGCAGTCACCGGTGGCACCAGCAGC
CTCAGGACAACGTCCAGCGGGCTCATCTCCGCGGCCTCCCTCCTGCCCAC
GCCACAGACGCCGCATAAGGCTATCTTGACCCCAAGTATGCCGACAACCA
CCAGCACCACCAGCAGCAGCAATGGTTGCACTAACGCGACTATGGTCAAC
AGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCATCCCCAAGGA
CGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGGAAGGTGCGCG
TAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCGGAAGAAGATT
AAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTCGCGTCAAAGG
CCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTCGGGGGGGCTG
TTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGATGGGGGCTCA
TCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTCTCGAGGACTA
G
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protein sequence of NO14G01530.1

>NO14G01530.1-protein ID=NO14G01530.1-protein|Name=NO14G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MSTLSMQAAPSLGHPMEKLLDNYMMAERGGGAEEGGAGATFMVEDGGMIS
YTGVFMDDDEDLDDDASASSTEAEVMAHLHAALGGSVSSTKASGSNSSSS
SSGSTSTSGGTVSAAPEGDKGEGWKMALLEGLEDFLKVEGAVPAGAAGSG
GSRRFSFDLSNLDMQTLEQLAAGATSGLSSRRGSFSLTMLEAEGLMAKGS
LPVGTAAPFPSSGPRGNGNGSGLPLGNMRVKQEMPVDTASRSNSVSSLGT
TASNSTSASSTDISDPVSNRSMSGATTTSKNKAVKKETSITTSASQATSK
SQPKKGGSSPTGAVTGGTSSLRTTSSGLISAASLLPTPQTPHKAILTPSM
PTTTSTTSSSNGCTNATMVNSPNGNGGTLVLPIIPKDGIARIGIYTLEER
KVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIV
GGAVAAAEAAAADGVADGGSSALLTQLMDLDELLED*
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Synonyms
Publications