NO14G01360, NO14G01360 (gene) Nannochloropsis oceanica

Overview
NameNO14G01360
Unique NameNO14G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr14:437951..439634 +

Link to JBrowse

Properties
Property NameValue
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:437951..439634 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO14G01360 vs. NCBI_GenBank
Match: XP_012200142.1 (hypothetical protein SPRG_19915 [Saprolegnia parasitica CBS 223.65] >KDO29249.1 hypothetical protein SPRG_19915 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.5 bits (267), Expect = 5.900e-20
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTETPRKYKNKKTVAEKFFSNTLN 234
            NP V LYR I+K++PRVLT+YD ++ P EAR  VQ  FRKN+ + DP ++DML+ K  MELEETLMQWKQK+HLL LL    ++  K +N+K V    F   L+
Sbjct:    8 NPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKSHLLTLL----DSGVKLQNEKNVVYDDFEEGLD 107          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: XP_024586123.1 (NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Plasmopara halstedii] >CEG49754.1 NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Plasmopara halstedii])

HSP 1 Score: 107.5 bits (267), Expect = 5.900e-20
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 0
Query:  118 VASYMGKDKTPKNPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL--AADTETPRKYKNKKTVAEKFFSNTLNPDD 237
            VA+      +  +P V LYR I+K++PRVLT+YD  + P+EAR  VQ LFR+++ V DP IVDML+ K  MELEETLMQWKQK HLL LL  A     P+   +     EKFF+   + +D
Sbjct:    5 VAAEKASAASTASPAVTLYRYITKQVPRVLTLYDISMEPSEARLAVQALFREHAEVKDPRIVDMLITKANMELEETLMQWKQKVHLLTLLERAQTLRQPKLVNSVDQSLEKFFAGIDDEED 125          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: CBJ30519.1 (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 106.3 bits (264), Expect = 1.300e-19
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  118 VASYMGKDKTPK-----NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTETPRKYKNKKTVAEKF 228
            + +YM K   P      +P  QLYR I+KE+PR+LTIYD D+  A+ARA +   FR N H+ DP +VD LV KGYM+LEET MQ+KQKTHLLRLL      P  + + + V + F
Sbjct:    5 LGNYMMKSVGPSRTGTASPATQLYRAIAKEVPRILTIYDVDMDFAQARAAIALYFRNNGHLKDPRVVDALVMKGYMDLEETTMQYKQKTHLLRLL-----NPSAHNDARAVKDDF 114          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: XP_008869602.1 (hypothetical protein H310_06356 [Aphanomyces invadans] >ETW01754.1 hypothetical protein H310_06356 [Aphanomyces invadans])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTE----TPRKYKNKKTVAEKFFS 230
            NP V LYR I+K++PRVLT+YD  + P+EAR  VQ  FRKN+ V DP +VDML+ K  MELEETLMQWKQK HL  LL +  +     P+ Y + +   E FF+
Sbjct:   14 NPAVTLYRQITKQVPRVLTLYDISMEPSEARLAVQAFFRKNADVKDPRVVDMLITKAGMELEETLMQWKQKAHLETLLDSGVKLMNNKPKVYDDYEEGLENFFA 117          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: XP_008612898.1 (hypothetical protein SDRG_08779 [Saprolegnia diclina VS20] >EQC33675.1 hypothetical protein SDRG_08779 [Saprolegnia diclina VS20])

HSP 1 Score: 105.5 bits (262), Expect = 2.300e-19
Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTETPRKYKNKKTVAEKFFSNTLN 234
            NP V LYR I+K++PRVLT+YD ++ P EAR  VQ  FRK++ + DP ++DML+ K  MELEETLMQWKQK+HLL LL    ++  K +N+K V    F   L+
Sbjct:   14 NPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKHAEIKDPRVIDMLISKANMELEETLMQWKQKSHLLTLL----DSGVKLQNEKNVVYDDFEEGLD 113          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: CCI10450.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 105.5 bits (262), Expect = 2.300e-19
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 0
Query:  113 MAFKAVASYMGKDKTPKNPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTETPRKY-KNKKTVAEKFFSNTLNPDD 237
            MA +     + K K+  +P V LYR I K++PRVLT+YD  + P+EAR  +Q LFRKN+++ DP +VDML+ K  MELEETL+QWKQK HLL LL    +      K KK   E F +   + D+
Sbjct:    1 MALRVAKEQLTKAKS--SPAVTLYRYIIKQVPRVLTLYDITMEPSEARLAIQALFRKNANIKDPRVVDMLITKANMELEETLLQWKQKVHLLTLLETGMQLRASADKVKKDPFENFIAGVEDEDE 123          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: XP_009839394.1 (hypothetical protein H257_13544 [Aphanomyces astaci] >ETV71148.1 hypothetical protein H257_13544 [Aphanomyces astaci])

HSP 1 Score: 104.4 bits (259), Expect = 5.000e-19
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTE----TPRKYKNKKTVAEKFFSNTLNPDD 237
            NP V LYR I+K++PRVLT+YD  + P+EAR  VQ  FRK++ V DP +VDML+ K  MELEETLMQWKQK HL  LL +  +     P+ + + +   E FF+     DD
Sbjct:   14 NPAVTLYRQITKQVPRVLTLYDISMEPSEARLAVQAFFRKHADVKDPRVVDMLITKAGMELEETLMQWKQKAHLETLLDSGVKLKNNKPKVFDDYEEGLENFFAGIDTEDD 124          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: OQR86403.1 (hypothetical protein ACHHYP_10576 [Achlya hypogyna])

HSP 1 Score: 104.0 bits (258), Expect = 6.600e-19
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL 208
            NP V LYR I+K++PRVLT+YD ++ P EAR  VQ  FRKN+ + DP ++DML+ K  MELEETLMQWKQK HL+ LL
Sbjct:   14 NPAVTLYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNAEIKDPRVIDMLISKANMELEETLMQWKQKAHLVTLL 91          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: CCA24644.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 103.6 bits (257), Expect = 8.600e-19
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  126 KTPKNPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLLAADTETPRKY-KNKKTVAEKFFSNTLNPDD 237
            KT  +P V LYR I K++PRVLT+YD  + P+ AR  +Q LFR+N+ V DP +VDML+ K  MELEETL+QWKQK HLL LL    +      K KK   E F +   + D+
Sbjct:   12 KTKSSPAVTLYRYIIKQVPRVLTLYDISMEPSTARLAIQALFRRNADVKDPRVVDMLITKANMELEETLLQWKQKVHLLTLLETGMQLRTSADKVKKDPFENFLAGVEDEDE 123          
BLAST of NO14G01360 vs. NCBI_GenBank
Match: OQR90841.1 (hypothetical protein THRCLA_22508 [Thraustotheca clavata])

HSP 1 Score: 103.2 bits (256), Expect = 1.100e-18
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0
Query:  130 NPVVQLYRTISKELPRVLTIYDADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQKTHLLRLL 208
            NP V +YR I+K++PRVLT+YD ++ P EAR  VQ  FRKN+ V DP ++DML+ K  MELEETLMQWKQK+HL+ LL
Sbjct:   14 NPAVTVYRHITKQVPRVLTLYDINMEPREARLAVQAFFRKNADVKDPRVIDMLISKANMELEETLMQWKQKSHLVTLL 91          
The following BLAST results are available for this feature:
BLAST of NO14G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012200142.15.900e-2052.88hypothetical protein SPRG_19915 [Saprolegnia paras... [more]
XP_024586123.15.900e-2048.76NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit... [more]
CBJ30519.11.300e-1949.57NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
XP_008869602.11.700e-1952.88hypothetical protein H310_06356 [Aphanomyces invad... [more]
XP_008612898.12.300e-1951.92hypothetical protein SDRG_08779 [Saprolegnia dicli... [more]
CCI10450.12.300e-1946.40unnamed protein product [Albugo candida][more]
XP_009839394.15.000e-1949.55hypothetical protein H257_13544 [Aphanomyces astac... [more]
OQR86403.16.600e-1961.54hypothetical protein ACHHYP_10576 [Achlya hypogyna... [more]
CCA24644.18.600e-1949.11conserved hypothetical protein [Albugo laibachii N... [more]
OQR90841.11.100e-1861.54hypothetical protein THRCLA_22508 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002334NSK002334Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01360.1NO14G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590054gene_5705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01360.1NO14G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01360 ID=NO14G01360|Name=NO14G01360|organism=Nannochloropsis oceanica|type=gene|length=1684bp
TGTATGTGGGGGAGGAGTGGAGTGGGGGTGGGTGTGTAATGAGGGCTTAC
GAAAGGGATGATGGGCGAAAAGCCAGGGCCGGGGACAGCCCCTTGTGTAC
AGCGTCGTCGAGGCATTCTTCTAGTCGAGGCGTGTGATGGGACTGGTGCG
TTGTGTAAGAGAGAGAGCAAGAAGTGGGGTGGTAGGCTTGGTTCAGTGAT
GTGTTGGAAGCGAGAGTAGTGGCTTAGAAAAACATGGCGACACCGCAGAG
GTCCGCTCCACCATAAAGCGCACATGTGCCCCGACATGGAATATCCCCCG
CTACGGTGAGTTGTGGGTGGCAGCTTGATGTGGGGTGAGGAAGCGGAACA
CGGTCCTTCTTCTCTCTCGAGCGACGTTGGTGTGTCGGGTGTGCGAAGAC
TCTTTTTGGGAAAAGGGGATGATAAGGCATGTGATGCTTTTGGCGCCGTT
GCTACTCCCCAACCAGTCAACCAGGCATCTTTGATAAAGCATGTGAGCTT
GGCGGCCATGTATCATCTGCAGTGTTTGACATGGGGAACCCTGAGGTTTA
ACGCGGGGGTCTGCCAGCGAAGTATCAACAAGACAAGTCTTGAGCAGCAA
GAGATGCGAATAGATCACTCACTCCAACCTCGCCATGCCGCCACACTACT
ACAGGCCGCAGCCATGGCTTTCAAGGCAGTGGCAAGCTACATGGGCAAGG
ATAAGACGCCCAAgtaggtggatatcgagtgtgtgggtgggaggaatcat
ctatggtggggtagagagcttggagcaacggcatcatcatcgttacggcc
ctccttggtctggtaagcgtagccccgactcacatgcttctacggacgtg
catatttatacagAAATCCGGTGGTACAGCTGTACCGCACCATCTCTAAG
GAGTTGCCCCGTGTGCTCACCATCTACGATGCGGACCTGGCCCCTGCTGA
Ggtacgtctgaaggcctgcgtgaggcggggcgggatagaatgaataacga
cgatggtgtgtcgtgtgcattgggaggggagatgtttcttatagagctgt
gtatgtttgaaggtcgctgtagagtcgagaatacctgcccgcgggcttgg
cgtggccgcgcagcgctgtgcatttcttccactcgagcaacacgaccgac
aggtgcacttcctatcggaggcgcaccaccaaccgcattctatcctcttt
cgcgcatcaaatacctctcatacggctttcaatcggttgttcagatcgat
tctcttattaatcactttctctgctaccccatatccaaatactcacaccc
ttcgcagGCGCGCGCCAAAGTCCAAAATCTCTTCCGCAAGAACTCCCACG
TGGGCGACCCGGTGATTGTGGACATGCTGGTCAAAAAGGGTTATATGGAA
TTAGAAGAAACGTTAATGCAATGGAAACAGAAAACGCATTTGCTTCGGTT
GCTGGCCGCAGACACAGAGACCCCGCGTAAGTACAAGAACAAGAAGACCG
TGGCCGAGAAGTTTTTTAGCAACACGTTGAATCCCGACGATTGAGTGCAA
TGCTATGGGGTAGGAGGTTGGATGGGATGAACAAGAGTTGAAATCCGTGT
ACGAAGAGAATTTACAAGATTACGATGACAGAGGAAGAAAAGACAACGAT
ATTTACATATACAATATAATACATGTTTTTCCAG
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protein sequence of NO14G01360.1

>NO14G01360.1-protein ID=NO14G01360.1-protein|Name=NO14G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MWGEEAEHGPSSLSSDVGVSGVRRLFLGKGDDKACDAFGAVATPQPVNQA
SLIKHVSLAAMYHLQCLTWGTLRFNAGVCQRSINKTSLEQQEMRIDHSLQ
PRHAATLLQAAAMAFKAVASYMGKDKTPKNPVVQLYRTISKELPRVLTIY
DADLAPAEARAKVQNLFRKNSHVGDPVIVDMLVKKGYMELEETLMQWKQK
THLLRLLAADTETPRKYKNKKTVAEKFFSNTLNPDD*
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Synonyms
Publications