NO14G01290, NO14G01290 (gene) Nannochloropsis oceanica

Overview
NameNO14G01290
Unique NameNO14G01290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length977
Alignment locationchr14:414603..415579 -

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Properties
Property NameValue
DescriptionHistone H3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:414603..415579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
GO:0005515protein binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR007125Histone_core_D
IPR000164Histone_H3/CENP-A
Homology
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: XP_015006550.1 (PREDICTED: uncharacterized protein LOC704845 [Macaca mulatta])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 132/140 (94.29%), Postives = 136/140 (97.14%), Query Frame = 0 
Query:   42 TPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            TP  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:  324 TPESMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 463
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: KYN01480.1 (Histone H3, partial [Cyphomyrmex costatus])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0 
Query:   44 FKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            F+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    1 FEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 138
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: WP_064660961.1 (hypothetical protein [Anaplasma phagocytophilum])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0 
Query:   35 LPSIHSTTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            L S+  T  F MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   43 LLSVVVTNVFGMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 189
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: XP_001057443.4 (PREDICTED: uncharacterized protein LOC680498 isoform X1 [Rattus norvegicus])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 132/144 (91.67%), Postives = 138/144 (95.83%), Query Frame = 0 
Query:   38 IHSTTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            +HS+   +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:  182 LHSSQRSQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 325
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: WP_081264137.1 (hypothetical protein [Anaplasma phagocytophilum])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0 
Query:   35 LPSIHSTTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            L S+  T  F MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   66 LLSVVVTNVFGMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 212
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: GAX76969.1 (hypothetical protein CEUSTIGMA_g4416.t1 [Chlamydomonas eustigma])

HSP 1 Score: 250.0 bits (637), Expect = 5.700e-63
Identity = 133/141 (94.33%), Postives = 137/141 (97.16%), Query Frame = 0 
Query:   41 TTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            T  F+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAVLALQEA EAYLVGLFEDTNLAAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:    8 TLYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA 148
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: CBJ32075.1 (conserved unknown protein [Ectocarpus siliculosus] >CBJ32083.1 conserved unknown protein [Ectocarpus siliculosus] >CBJ33200.1 conserved unknown protein [Ectocarpus siliculosus] >CBN77454.1 conserved unknown protein [Ectocarpus siliculosus] >CBN77461.1 conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 249.6 bits (636), Expect = 7.400e-63
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0 
Query:   46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEA EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: EFZ14264.1 (hypothetical protein SINV_11024, partial [Solenopsis invicta])

HSP 1 Score: 249.6 bits (636), Expect = 7.400e-63
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 0 
Query:   28 TILTPTPLPSIHSTTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            T +T     +++    F+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   54 TAITSLVFTALYGRHLFEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 207
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: XP_014651782.1 (PREDICTED: histone H3.1-like [Ceratotherium simum simum])

HSP 1 Score: 249.6 bits (636), Expect = 7.400e-63
Identity = 133/149 (89.26%), Postives = 139/149 (93.29%), Query Frame = 0 
Query:   33 TPLPSIHSTTPFKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            +P+   HS +   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   49 SPVACFHSRSFLVMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 197
[Close]
BLAST of NO14G01290 vs. NCBI_GenBank
Match: XP_020822079.1 (uncharacterized protein LOC110194232 [Phascolarctos cinereus])

HSP 1 Score: 249.6 bits (636), Expect = 7.400e-63
Identity = 131/138 (94.93%), Postives = 135/138 (97.83%), Query Frame = 0 
Query:   44 FKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS 182
            F MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKD+QLARRIRGER+
Sbjct:  403 FNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 540
The following BLAST results are available for this feature:
BLAST of NO14G01290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_015006550.15.700e-6394.29PREDICTED: uncharacterized protein LOC704845 [Maca... [more]
KYN01480.15.700e-6394.93Histone H3, partial [Cyphomyrmex costatus][more]
WP_064660961.15.700e-6391.16hypothetical protein [Anaplasma phagocytophilum][more]
XP_001057443.45.700e-6391.67PREDICTED: uncharacterized protein LOC680498 isofo... [more]
WP_081264137.15.700e-6391.16hypothetical protein [Anaplasma phagocytophilum][more]
GAX76969.15.700e-6394.33hypothetical protein CEUSTIGMA_g4416.t1 [Chlamydom... [more]
CBJ32075.17.400e-6397.06conserved unknown protein [Ectocarpus siliculosus]... [more]
EFZ14264.17.400e-6386.36hypothetical protein SINV_11024, partial [Solenops... [more]
XP_014651782.17.400e-6389.26PREDICTED: histone H3.1-like [Ceratotherium simum ... [more]
XP_020822079.17.400e-6394.93uncharacterized protein LOC110194232 [Phascolarcto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002327NSK002327Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01290.1NO14G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|506761gene_5697Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100123g12gene5803Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01290.1NO14G01290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01290 ID=NO14G01290|Name=NO14G01290|organism=Nannochloropsis oceanica|type=gene|length=977bp
TCGTCCTCGCTTCTCCTCAATCTGCTTTTGATCTCGTGACTTGAAGCTTT
TTGTCCTACAAGTCGTCTGTGTCCCGTGGTGTTATATTTTGCCTTGCCCC
ACGGTCTCCCCATCCTTGCGACCAGTATAACAATAATGATGGGGACATAA
CTCGACCCTGCTTTTCTGAGGGCTAGCACACTACAACTTAAAAAGGGCCG
CCCATGCCGACCCTCCTTATACTACTCAAGCCCCGGCATCACGTCCACCA
CGGCGCTCTAAGCCTTGCCCTTTACCCCTATGTCTGAACTATCTTGTCGT
GAGGTAAACAGGCGAATGGTCAAGCAATCCAACCGGAGCAGCACGCTGCA
ACCCTATTGCACCATTTTGACTCCTACCCCTCTCCCTTCAATCCACAGCA
CCACTCCATTCAAAATGGCTCGCACCAAGCAAACCGCCCGCAAGTCCACC
GGTGGAAAGGCCCCCCGAAAGCAGCTCGCCACCAAGGCCGCCCGCAAGTC
CGCACCCGCTACCGGCGGTGTGAAGAAGCCCCACCGTTACCGCCCCGGGA
CGGTCGCCCTGCGTGAGATCCGCCGCTACCAGAAGAGCACTGAGCTCCTC
ATCCGCAAGTTGCCCTTCCAGCGCCTGGTCCGTGAGATCGCCCAGGACTT
CAAGACCGACCTGCGTTTCCAGGGCTCCGCCGTACTCGCTTTGCAGGAGG
CCACTGAGGCTTACCTCGTGGGTCTCTTCGAGGACACCAACCTTGCTGCA
ATCCACGCAAAGCGTGTGACCATCATGCCCAAGGACGTGCAGCTCGCCCG
CCGCATCCGCGGGGAGCGATCGTAAGCATTTCGCTTGCACCGCGGTGAGC
CCGGATTGTGTACATTCCAGCCCCAAGTACAGATTAAAATCAGAAAAAAA
GAATACACGCGTCAATCCTCAACACTCCAACCAGGGATCTCTAGATCCCT
CCCAAATTGAACACACACATCACCTAT
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protein sequence of NO14G01290.1

>NO14G01290.1-protein ID=NO14G01290.1-protein|Name=NO14G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MSELSCREVNRRMVKQSNRSSTLQPYCTILTPTPLPSIHSTTPFKMARTK
QTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRY
QKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAYLVGLF
EDTNLAAIHAKRVTIMPKDVQLARRIRGERS*
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Synonyms
Publications