NO14G01200, NO14G01200 (gene) Nannochloropsis oceanica

Overview
NameNO14G01200
Unique NameNO14G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1138
Alignment locationchr14:392070..393207 +

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Properties
Property NameValue
DescriptionDihydrolipoamide s-succinyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:392070..393207 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR000089Biotin_lipoyl
IPR020373Ribosomal_S36_mt
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Homology
BLAST of NO14G01200 vs. NCBI_GenBank
Match: EWM24690.1 (dihydrolipoamide s-succinyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 143.3 bits (360), Expect = 1.200e-30
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query:   66 TRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSA 159
            TRAFH S S R MAEVVMTVPSMGDSITEGTI+SWEK VG+ VALDDVVVVIETDKVSVDIRA + G+LVEQ+AAVDDNV+VGA LLKIDT A
Sbjct:   61 TRAFHGSVSLR-MAEVVMTVPSMGDSITEGTIRSWEKKVGEAVALDDVVVVIETDKVSVDIRASNSGVLVEQYAAVDDNVEVGAKLLKIDTQA 152          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: CBJ32042.1 (dihydrolipoamide succinyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 107.8 bits (268), Expect = 5.500e-20
Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 0
Query:   80 EVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKID---TSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDLKSTPGSKTFDEM--PAMFGRPSLSEKEIEAIESGGA 285
            E VM +P +GDSI+EGT+  W K+VGD V+ D+V+ V+ETDKVSVD+++   G++V+ FAAVDD V+VG  L  ID    S                                             + + KPLIKF+GKR+L+ +            + G       P R+   + +PG+  F ++   AMFGRP++SE+E++A++SGGA
Sbjct:   90 EHVMELPGLGDSISEGTVVEWRKSVGDEVSEDEVIAVVETDKVSVDVQSTHVGVVVKLFAAVDDVVEVGKPLCTIDGDEASVVKARVQAQQDEEDANAPPPKLKKPSLEDAMAGAFMAGADFVAPMKKRHKPLIKFVGKRALLTE------------KKGKKEEDGLPARH---RHSPGALDFSQIVGGAMFGRPAMSEEEMDAVDSGGA 284          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: XP_008607563.1 (hypothetical protein SDRG_03703 [Saprolegnia diclina VS20] >EQC38739.1 hypothetical protein SDRG_03703 [Saprolegnia diclina VS20])

HSP 1 Score: 100.9 bits (250), Expect = 6.700e-18
Identity = 105/221 (47.51%), Postives = 135/221 (61.09%), Query Frame = 0
Query:   66 TRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDLKSTPGSKTFDEMPAMFGRPSLSEKEIEAIESGGATL 287
            +RA H S++ RMM E ++ VPSMGDSI+EGT+   +K +G  V +D+VV+V+ETDKVSVD+ +   G LV+QF  +D +V+VG +L  ID               XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  R P IKFLGKRSL+    PAA SAA      A +            S+     F  +P+ F R  +S+KEI AI +  + L
Sbjct:   52 SRAIH-SSAMRMMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEIDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDV---------KATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHDGARVPRIKFLGKRSLLAHPAPAAKSAAPSTLVVAPS------------SSADVLPFGNLPSQFARKPISKKEIHAINTAASFL 250          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: XP_012199579.1 (hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65] >KDO29513.1 hypothetical protein SPRG_05470 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-16
Identity = 100/221 (45.25%), Postives = 135/221 (61.09%), Query Frame = 0
Query:   66 TRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDLKSTPGSKTFDEMPAMFGRPSLSEKEIEAIESGGATL 287
            +RA H S++ R+M E ++ VPSMGDSI+EGT+   +K +G  V +D+VV+V+ETDKVSVD+ +   G LV+QF  +D +V+VG +L  ID               XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   E  R P IKFLGKRSL+    P +A+ + +    +++    P              F  +P+ F R  +S+KEI AI +  + L
Sbjct:   16 SRALH-SSAMRLMPEHIVKVPSMGDSISEGTVVDLKKQIGQHVEVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDV---------KATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHHEGARVPRIKFLGKRSLLAHPAPTSAAPSTLVVAPSSSADVLP--------------FGSLPSRFARKPISKKEIHAINTAASFL 212          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: EWM23638.1 (dihydrolipoamide succinyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-16
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   67 RAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSA 159
            RA  AS       + ++ VPSMGDSITEGTI +W+K VGD V  DDV+VV+ETDKVSVD+RA   GI+ E   A DD V VG  L KIDT+A
Sbjct:   73 RALSASAGQ----DFILNVPSMGDSITEGTIVNWQKKVGDWVDADDVIVVLETDKVSVDVRAPRSGIITEVIGAEDDTVGVGVPLAKIDTTA 160          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: OQR90254.1 (hypothetical protein ACHHYP_05680 [Achlya hypogyna])

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-16
Identity = 99/224 (44.20%), Postives = 123/224 (54.91%), Query Frame = 0
Query:   67 RAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDLKSTPGSKT----FDEMPAMFGRPSLSEKEIEAIESGGATL 287
            R  H S++ R M E ++ VPSMGDSI+EGT+    K +G+ V +D+VV+V+ETDKVSVD+ +   G LV+QF  +D +V+VG +L  ID           XXXXXXXXXXXXXXXXXXXXXX                 R P IKFLGKRSL+    PAA  AA           P P     L   P S      F   PA F R  +S+KE+ AI +  A L
Sbjct:   15 RCLH-SSAMRFMPEHIVKVPSMGDSISEGTVVDLRKQIGEHVNVDEVVMVLETDKVSVDVMSPVAGTLVKQFVELDQDVEVGRDLFVIDGDVKATVTSSTXXXXXXXXXXXXXXXXXXXXXXHHTG------------ARVPRIKFLGKRSLLAHPAPAATKAA-----------PTP-----LVIAPSSSADVLPFGAAPARFARKPISKKEVHAINTAAAFL 209          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: CBJ27482.1 (2-oxoglutarate dehydrogenase, E2 component [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-16
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 0
Query:   79 AEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTS 158
            +E V+ VPSMGDSI+EGTI  W K  GD V LD+VVVV+ETDKVS+D+RA   G LVEQ AA  D V+VGA L+K+DT+
Sbjct:   74 SEEVIPVPSMGDSISEGTIVEWAKQPGDSVELDEVVVVLETDKVSIDVRAPSAGTLVEQMAADGDTVEVGAPLMKLDTA 152          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: OEU18492.1 (single hybrid motif-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.0 bits (232), Expect = 8.200e-16
Identity = 110/217 (50.69%), Postives = 134/217 (61.75%), Query Frame = 0
Query:   72 STSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTS--ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDLKSTPGSKTFDEMPAMFGRPSLSEKEIEAIESGGATL 287
            S ++ ++ +  M VPSMGDSITEGT+  W+  +G  V  DDV+ +IETDKV+VDI+A   G++ +QF  +DDNV+VGA+L +IDT   AT      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS   R P I FL      GKD  AAA                             K    +PA +GR  +SE+EIEA+ SGGA L
Sbjct:   57 SATNIVLEKHTMKVPSMGDSITEGTLVEWQAQIGQKVEEDDVLALIETDKVTVDIKATKAGVITKQFGEIDDNVEVGADLYEIDTEGVATVEAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGARIPSINFL------GKDGWAAALTV--------------------------KPEVVVPANYGRLPMSEEEIEALMSGGANL 241          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: XP_009821610.1 (hypothetical protein H257_00569 [Aphanomyces astaci] >ETV89210.1 hypothetical protein H257_00569 [Aphanomyces astaci])

HSP 1 Score: 92.8 bits (229), Expect = 1.800e-15
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   66 TRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTSAT 160
            +RA       R  A V + VPSMGDSI+EGT+  W KNVGD V  DDVVVVIETDKVSVD+R+   G++    A VD NV+VGA L ++D  A+
Sbjct:   44 SRAKFCVAQIRSFASVDIPVPSMGDSISEGTVVEWVKNVGDHVEADDVVVVIETDKVSVDVRSPHAGVITAHLADVDANVNVGAPLFQLDQGAS 137          
BLAST of NO14G01200 vs. NCBI_GenBank
Match: XP_009037630.1 (hypothetical protein AURANDRAFT_71782 [Aureococcus anophagefferens] >EGB07632.1 hypothetical protein AURANDRAFT_71782 [Aureococcus anophagefferens])

HSP 1 Score: 91.3 bits (225), Expect = 5.300e-15
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 0
Query:   72 STSSRMMAEVVMTVPSMGDSITEGTIKSWEKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGANLLKIDTS 158
            + ++R  +   + VPSMGDSITEGT+  W   VGD VA+DD+VV+IETDKVSV++RA   G + E  A +DD V+VGA L KIDTS
Sbjct:  421 AVAARCFSVEDVPVPSMGDSITEGTVAEWSVEVGDTVAVDDIVVMIETDKVSVEVRAPVSGAVTELLAELDDVVEVGAPLFKIDTS 506          
The following BLAST results are available for this feature:
BLAST of NO14G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24690.11.200e-3082.80dihydrolipoamide s-succinyltransferase [Nannochlor... [more]
CBJ32042.15.500e-2034.76dihydrolipoamide succinyltransferase [Ectocarpus s... [more]
XP_008607563.16.700e-1847.51hypothetical protein SDRG_03703 [Saprolegnia dicli... [more]
XP_012199579.11.300e-1645.25hypothetical protein SPRG_05470 [Saprolegnia paras... [more]
EWM23638.12.200e-1657.61dihydrolipoamide succinyltransferase [Nannochlorop... [more]
OQR90254.12.200e-1644.20hypothetical protein ACHHYP_05680 [Achlya hypogyna... [more]
CBJ27482.12.800e-1663.292-oxoglutarate dehydrogenase, E2 component [Ectoca... [more]
OEU18492.18.200e-1650.69single hybrid motif-containing protein [Fragilario... [more]
XP_009821610.11.800e-1554.26hypothetical protein H257_00569 [Aphanomyces astac... [more]
XP_009037630.15.300e-1555.81hypothetical protein AURANDRAFT_71782 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002316NSK002316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G01200.1NO14G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589991gene_5687Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101270g1gene5795Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G01200.1NO14G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G01200 ID=NO14G01200|Name=NO14G01200|organism=Nannochloropsis oceanica|type=gene|length=1138bp
ACAGACGATAGCACAAGACAATTATGCTGCAGGTGGCAATGGTGGTGCTG
AGAAGGCGGCTTGTTCTTGCAGCGTCGCCCAGTGTGTCCGCTGGAGCAGC
GGCGGCAGTTGGAGGATCAAGAAGGCTAGGCCTTGCCTCCCTGGCAAACC
TCACCACTCAGCGGCAGCAGCATCTACAGAAACATCGGCAGCAACAGTCG
AACAATAGCTTAGTATGGACGCGGGCGTTTCATGCGTCAACATCCAGTCG
CATGATGGCAGAGGTGGTCATGACGGTTCCCAGgtatgtgggtcaagcag
agaaggaagagatgcgaatcgtctagacaaggcaagacgacattctcatt
cattcatttccatttcacttccacaacaaaatcgtagCATGGGTGACTCG
ATTACGGAGGGTACCATCAAGTCGTGGGAGAAGAATGTTGGGGACGTGGT
TGCACTGGACGATGTTGTGGTGGTCATAGAGACAGACAAGGTCTCTGTTG
ACATTCGAGCGAAAGACAAGGGCATTCTCGTCGAGCAATTCGCAGCCGTG
GACGATAATGTTGATGTCGGTGCCAATCTCCTCAAGATTGATACAAGTGC
CACTGCCTCCGCCTCCGCTCCTTCAGCTGCCCAGAAATTAGTCCCCTCTG
ATGCTGCTCCTGATGCTGCTCCTGCCTCTGTTCCTGCTCCTGCCTCTGCT
CCTGCCTCTGATCCTGCTCCTACAACCGCATCAGAAGTGCAACGAAAGCC
TCTCATCAAATTTTTGGGGAAGCGGTCCTTGATTGGCAAGGACATTCCTG
CTGCTGCGTCTGCTGCCCAAATGGCAAGGACAGGAGCAGCAGCAACAGGG
CCCGCGCCTGGAAGGTATGAAGACCTTAAAAGCACACCGGGTTCCAAAAC
GTTTGATGAGATGCCAGCCATGTTTGGAAGGCCTTCGTTGAGCGAAAAGG
AGATTGAGGCGATCGAGAGCGGGGGGGCGACGCTTTGATAGTAAGGAGGG
AGGGCGGGCGGAGGAGGCGGAGTTTTTGTAGAAAGGCGGCGATGCGGAGA
GGAGGAAAGGGGGAGGGAACAGGAGACAAAAGTATAGGAGGAGCACATCA
TTGGATGACGCAACTTCTCTTTATACATACAGTACAAC
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protein sequence of NO14G01200.1

>NO14G01200.1-protein ID=NO14G01200.1-protein|Name=NO14G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MLQVAMVVLRRRLVLAASPSVSAGAAAAVGGSRRLGLASLANLTTQRQQH
LQKHRQQQSNNSLVWTRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSW
EKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGAN
LLKIDTSATASASAPSAAQKLVPSDAAPDAAPASVPAPASAPASDPAPTT
ASEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDL
KSTPGSKTFDEMPAMFGRPSLSEKEIEAIESGGATL*
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Synonyms
Publications