NO14G00950, NO14G00950 (gene) Nannochloropsis oceanica

Overview
NameNO14G00950
Unique NameNO14G00950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2298
Alignment locationchr14:323135..325432 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:323135..325432 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011719CHP02058
Homology
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_005853447.1 (hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526] >EKU22913.1 hypothetical protein NGA_0179302, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 229.6 bits (584), Expect = 9.200e-57
Identity = 105/124 (84.68%), Postives = 119/124 (95.97%), Query Frame = 0
Query:   87 SNVEGMQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            S+VEGMQQ+LFV++GFG DQHGQDATKAA+KACR+AIEWNSLPSINQIVPGGYD MKVRVQ+AVPVDA +IDTEA+KK FPYGQLLP+EIQ GGMRASSGIALPAMGD+NDDWI+A+AAV+VGW
Sbjct:   46 SSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 169          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: EWM24740.1 (Conserved hypothetical protein CHP02058 [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 9.200e-57
Identity = 105/124 (84.68%), Postives = 119/124 (95.97%), Query Frame = 0
Query:   87 SNVEGMQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            S+VEGMQQ+LFV++GFG DQHGQDATKAA+KACR+AIEWNSLPSINQIVPGGYD MKVRVQ+AVPVDA +IDTEA+KK FPYGQLLP+EIQ GGMRASSGIALPAMGD+NDDWI+A+AAV+VGW
Sbjct:   59 SSVEGMQQLLFVQMGFGCDQHGQDATKAAVKACRNAIEWNSLPSINQIVPGGYDAMKVRVQIAVPVDASNIDTEAIKKAFPYGQLLPVEIQSGGMRASSGIALPAMGDRNDDWIVAIAAVSVGW 182          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: CBJ33102.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 184.9 bits (468), Expect = 2.600e-43
Identity = 85/119 (71.43%), Postives = 103/119 (86.55%), Query Frame = 0
Query:   92 MQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            M  VLFVE+GFG+DQHGQ+ATKA ++ACR+AIE+NS+PSI  IVPGGY GMK+RVQLAVPV  +++D E +KKVFPYG+LLPIE Q GGMRASSGIALP MGD NDD I+A++ VTVG+
Sbjct:    1 MDHVLFVELGFGNDQHGQNATKACVRACRNAIEFNSIPSIKNIVPGGYAGMKLRVQLAVPVAEEEVDVEEIKKVFPYGELLPIEFQSGGMRASSGIALPEMGDTNDDMIVAISCVTVGY 119          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_002509002.1 (predicted protein [Micromonas commoda] >ACO70260.1 predicted protein [Micromonas commoda])

HSP 1 Score: 163.7 bits (413), Expect = 6.200e-37
Identity = 75/121 (61.98%), Postives = 100/121 (82.64%), Query Frame = 0
Query:   91 GMQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLL-PIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            GM  VLFVE+G G+DQHGQDATKAA++ACR+AIE+NS+PSI QIVPGGYD MK+ +Q+ VP  A  +D E +++VFPYGQ+  PIE+  GG+ A SGI +P MGDK+D+++IAVAA+T+G+
Sbjct:   88 GMNHVLFVEIGMGADQHGQDATKAAVRACRNAIEFNSIPSIRQIVPGGYDNMKLHIQIGVPKGAV-LDLEKIRRVFPYGQICEPIEVVEGGLMARSGIKIPEMGDKSDEFVIAVAAITIGY 207          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_003061760.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH54390.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 157.9 bits (398), Expect = 3.400e-35
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 0
Query:   92 MQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLL-PIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            M QVLFVE G G+DQHGQDATKAA++ACR+AIE+NS+PSI  +VPGGYD MK+ + L VP    ++D E+VK VFPYG+++ P+ +  GG+ A SGIA+  MGD NDD++IAVAAVTVG+
Sbjct:    1 MTQVLFVECGIGADQHGQDATKAAVRACRNAIEFNSIPSIRAVVPGGYDNMKLHIHLGVPA-GHEVDLESVKAVFPYGRIVEPVRVDAGGLLAKSGIAIAEMGDVNDDFVIAVAAVTVGY 119          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_003079885.2 (Conserved hypothetical protein CHP02058 [Ostreococcus tauri] >CEF98376.1 Conserved hypothetical protein CHP02058 [Ostreococcus tauri] >OUS48440.1 hypothetical protein BE221DRAFT_189740 [Ostreococcus tauri])

HSP 1 Score: 156.8 bits (395), Expect = 7.600e-35
Identity = 71/121 (58.68%), Postives = 96/121 (79.34%), Query Frame = 0
Query:   90 EGMQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            +GM+ VLF E GFG+DQHGQDATKAA++ACR+AIE+NS+PSI +IVPGGY+GMK+ V L VP  A  +D +AV+  FPYG++LP+ +  GG+R  S IA+P  GD NDD+++ VA V+VG+
Sbjct:   26 DGMESVLFSECGFGADQHGQDATKAALRACRNAIEFNSIPSIREIVPGGYEGMKIHVHLGVPRGA-SVDRDAVRDSFPYGEVLPVVVDDGGLRTRSWIAIPEQGDANDDFLVCVANVSVGY 145          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_001418471.1 (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >ABO96764.1 predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 155.2 bits (391), Expect = 2.200e-34
Identity = 70/120 (58.33%), Postives = 96/120 (80.00%), Query Frame = 0
Query:   91 GMQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            G ++ LF E GFG+DQHGQDATKAA++ACR+AIE+NS+PS+  +VPGGY  MK+ VQL VP +AK +D   V++VFPYG+++ ++I  GG+RA S I++PA GD NDD++I VA VTVG+
Sbjct:    3 GFERALFAECGFGADQHGQDATKAAVRACRNAIEFNSVPSVRAVVPGGYAKMKIHVQLGVPENAK-VDAGRVREVFPYGEVVDVQIDTGGLRARSWISIPAQGDANDDFLICVACVTVGY 121          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_007513195.1 (conserved hypothetical protein [Bathycoccus prasinos] >CCO16753.1 conserved hypothetical protein [Bathycoccus prasinos])

HSP 1 Score: 147.9 bits (372), Expect = 3.500e-32
Identity = 72/126 (57.14%), Postives = 94/126 (74.60%), Query Frame = 0
Query:   92 MQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGD-------KNDDWIIAVAAVTVGW 211
            M + LFVE+G GSDQHGQD TKAA++AC+ AI +NSLP+I  ++PGGY GMK+ V +A P+DA  +D + VKKVFPYG  + +E+ RGGM ASSGIA+ AMGD        NDD+I+  AAV+VG+
Sbjct:    1 MSKTLFVELGVGSDQHGQDGTKAAVRACKDAISFNSLPAIADLIPGGYGGMKLHVLVAAPIDAYPVDVDEVKKVFPYGS-VDVELVRGGMVASSGIAIEAMGDGFDADGRANDDFIVVNAAVSVGY 125          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: XP_009040873.1 (hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens] >EGB04486.1 hypothetical protein AURANDRAFT_6937, partial [Aureococcus anophagefferens])

HSP 1 Score: 141.0 bits (354), Expect = 4.300e-30
Identity = 66/118 (55.93%), Postives = 91/118 (77.12%), Query Frame = 0
Query:   94 QVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAK-DIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            +VLFVE+G+G DQHGQD TKAA++A R+AIE+NS+PSI  +VPGGYD MK+ + +A+P     ++D   ++ VFPYG +  +E+Q GG    SGIALPAMGD+NDD I+A+ +VTVG+
Sbjct:    1 RVLFVEMGWGCDQHGQDPTKAAVRAARNAIEFNSIPSIGAVVPGGYDNMKLGLDVALPRRCHGELDQTQLRAVFPYGNIAFVELQDGGALFRSGIALPAMGDRNDDAIVAIVSVTVGY 118          
BLAST of NO14G00950 vs. NCBI_GenBank
Match: OEU18801.1 (hypothetical protein FRACYDRAFT_268448 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 136.7 bits (343), Expect = 8.200e-29
Identity = 65/120 (54.17%), Postives = 91/120 (75.83%), Query Frame = 0
Query:   92 MQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAVPVDAKD-IDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWIIAVAAVTVGW 211
            ++ VLFVE GFG+D HGQ +TKAAI+ACR+AIE+NS+PS+N+++P GYDG+K+ V LAVP   KD +D   V++VFPYG  +  ++  GGM A SGIA+  +GD N+D ++   AVTVG+
Sbjct:   34 VENVLFVECGFGNDSHGQSSTKAAIRACRNAIEFNSIPSMNRLIPNGYDGLKLDVLLAVPPKYKDSLDLLQVQEVFPYGS-IRFQVTDGGMIAPSGIAIEKLGDTNEDMVVVCVAVTVGY 152          
The following BLAST results are available for this feature:
BLAST of NO14G00950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853447.19.200e-5784.68hypothetical protein NGA_0179302, partial [Nannoch... [more]
EWM24740.19.200e-5784.68Conserved hypothetical protein CHP02058 [Nannochlo... [more]
CBJ33102.12.600e-4371.43conserved unknown protein [Ectocarpus siliculosus][more]
XP_002509002.16.200e-3761.98predicted protein [Micromonas commoda] >ACO70260.1... [more]
XP_003061760.13.400e-3561.67predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_003079885.27.600e-3558.68Conserved hypothetical protein CHP02058 [Ostreococ... [more]
XP_001418471.12.200e-3458.33predicted protein, partial [Ostreococcus lucimarin... [more]
XP_007513195.13.500e-3257.14conserved hypothetical protein [Bathycoccus prasin... [more]
XP_009040873.14.300e-3055.93hypothetical protein AURANDRAFT_6937, partial [Aur... [more]
OEU18801.18.200e-2954.17hypothetical protein FRACYDRAFT_268448 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002260NSK002260Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00950.1NO14G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566019gene_5663Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100272g3gene5748Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00950.1NO14G00950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00950 ID=NO14G00950|Name=NO14G00950|organism=Nannochloropsis oceanica|type=gene|length=2298bp
GGGCGAGGTGTCAGAGATTTATTTTGGATTTTTTGGGGTTTCTGTTCCTT
AAACAACTCCAGAAAGGGCATTGAACGACCGACTGAGTGGGTGTTCAGTG
CTTGCTGTTTGCTGCCGTAGCGGCTGTAAGGGCTCTTGACACCAAAGTAT
TGACCATCTGTGCGCACGACCTCACTTACACGAATTTGAGACTGGGCACG
GTAGGCATCATCAAAAAGAGAATACCACAAGGCAACAGCATCTTTTTCAC
ACGCTCTTATATAAAAATTCCTGTGCCAAAGTCATGTATTTACCTCAAAG
TTTTTGGGAACGTATTTTTCCAGCAAACATCGCAGTTCGCTGACCCAACC
GAACAGTCTAGCTCCACGTCTTGTACACGTCCAATGGCCTATTTCCTGAC
ACTAAATCCAGACGCATCCTCTACCCGGACACACAGAACACTTAATACTC
AAATGCTGCAGATAGACAGCTCCTCCTATTTCCTTGCCTGCCTACTACTA
CTGCTAGCTACGCACTGCTCCAACACTCACGCCTTCCTCCTCTCCTACCC
ATCGTCAAGCACCACCGCGGTACCGCGCGCACAAACAACCACTAGTAATA
TTATTGCGAACAGAATGTCCGCTTCTTCCTCTCCTTCATCTTCAAATGTG
GAAGGAATGCAGCAAGTGCTCTTTGTCGAGgtaaggatgaggcttcggca
tagcagctttatttcgtgacgcccaaaatgacttgagggagagccttcgc
cgcagtactatgcatgaggcgtgacataaaagtgcttgaacatgcatgaa
taaaggtatagatggtttgatagggtatatatatcttagttatggtgtaa
atgcaggtggcaggatttacaaggcagtgcaaagcgtgctgtaatcagaa
tcacacctcaaagttctcctctcgtccctctcccccctacattcccatca
ctgcctaccggaacaacacacacatgccttatacatccaattaccgtctc
tccagGTTGGTTTCGGCAGCGACCAGCACGGACAAGACGCCACCAAGGCA
GCTATTAAAGCCTGTCGCAGCGCCATTGAGTGGAACTCCCTCCCTTCCAT
AAATCAGATCGTCCCTGGAGGTTACGATGGCATGAAAgtacgttgattat
ctggttggtgtgatgatttcgaaattcggctctaaccccgtcttaactca
cattccgtctatgttttgtgcacgcctccgtatacttaaatcgtgaatcc
gtctaataaccttttgacgtctgctctcctctccctcgctcagtcgctct
taactctattcctcctaccgtgcgttttttgcagtcgtcattgagtcgac
cttgtttgaataaacaccagatctttgggattagcaagtctatattgaca
accgatggcagattatgtgactctcattatcttatctaactcttctcagc
catctcttcgcctctttccctcccttactccctttccttccctttttacc
cttctaatcaaacttcctctcctcttttctttccttcccgagGTGCGAGT
CCAACTCGCCGTCCCCGTCGACGCCAAAGACATTGACACCGAGGCCGTGA
AAAAAGTTTTCCCGTACGGTCAACTATTGCCGATTGAGATTCAGCGGGGA
GGGATGCGGGCTTCGAGCGGCATTGCGCTGCCGGCCATGGGGGATAAGAA
CGACGATTGGATCATTGCCGTTGCAGCTGTAACGGTGGGATGGTAGGGAG
GGAGGGAGGAAGGGTGGGAGATGGATGAGGAGGTGGCTGAGTAGGGAGAA
AGCTACACATGTAAGACCCTCATGTAGGGAGGGAGAGAGGTAGAAAGGGT
GGGAATGCAAACGCAAGGAAAATAGTCACAAACCAGATGATTCAAATCAA
GAGTTAACGTCCTTGCTGGGCCAAGCAATGCCACCATGGACAGGTGGATG
TCTTTCGAGCAGGGCGCACCTAGGGCTCGTTTTGCTTCCAACAGGCCTAG
ACACGCAGAGTCCCATGGCGAGGTCAGCATGCGTTCTGAGCCCCCTTATT
CCAAGGGGATGCATGGACGTTGTGGTGTCGGGTACCTGTTGATATTGAAA
CCTGCCGGAAACCCTGCTGCTGCTGCTGCGTCAGGCAGCCCCTTCTTCCC
CACGCCAATCTTAATTGTCCACCATTTTTGTCGTTCCTTTCATCCTTTCG
TTTGTCTAATGGGGCAAAGTGAAAGATAAATTACATCACGAAAGAACCAC
GAGAAGTAATTACAGAGTCCCCCTCTGATATCACTTGGCGAGCGCAAT
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protein sequence of NO14G00950.1

>NO14G00950.1-protein ID=NO14G00950.1-protein|Name=NO14G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MAYFLTLNPDASSTRTHRTLNTQMLQIDSSSYFLACLLLLLATHCSNTHA
FLLSYPSSSTTAVPRAQTTTSNIIANRMSASSSPSSSNVEGMQQVLFVEV
GFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDGMKVRVQLAV
PVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPAMGDKNDDWI
IAVAAVTVGW*
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Synonyms
Publications