NO14G00930, NO14G00930 (gene) Nannochloropsis oceanica

Overview
NameNO14G00930
Unique NameNO14G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2780
Alignment locationchr14:318678..321457 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:318678..321457 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR002913START_lipid-bd_dom
Homology
[Close]
BLAST of NO14G00930 vs. NCBI_GenBank
Match: XP_005853446.1 (hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526] >EKU22912.1 hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 411.0 bits (1055), Expect = 3.400e-111
Identity = 239/322 (74.22%), Postives = 261/322 (81.06%), Query Frame = 0 
Query:    1 MYSRSLQRSLALAACVTVSGEFAARVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLXXTASAPSLASFFLSSPSPAFCSA-------TAIPEYHQVPLPPTDASDTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTKTGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKNCRLVYIKGAPKPMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALPENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLAVEAAADDLPGVLGVMKAHLESAA 316
            MY+RSL RSLALAA VTV+G FAARV+XXXXXXXXXXXXXXXXXXXXXXXX              P L SFFLS   PA C+A         IPE+HQVP P TD +DT +++ RM+KY    SL++V KFKKEKAGVKIYTVKEGSIPDP  GG KTGLPVARIGEAVI APL+QVATLWWVFNGRILWDK NTLASEVVEEY KN RLVYIKG PKPMISSRDFVFVSHK+PA D+GG  G+QAF+QTNAA  LPENSGAVRGNINS++LL+ +D YTTRVRYVCEI P GWLP +AVEAAADDLPGVLGVMKAHLES A
Sbjct:    1 MYNRSLHRSLALAASVTVTGAFAARVYXXXXXXXXXXXXXXXXXXXXXXXXQSPAPLTKHIHEPVPCLPSFFLSPRPPAACAAAPAPGLPAGIPEFHQVPQPATDPADTDSIVFRMQKYFTTASLEEVAKFKKEKAGVKIYTVKEGSIPDPAIGGRKTGLPVARIGEAVINAPLEQVATLWWVFNGRILWDKVNTLASEVVEEY-KNARLVYIKGTPKPMISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEA 321
[Close]
BLAST of NO14G00930 vs. NCBI_GenBank
Match: EWM24734.1 (Lipid-binding START [Nannochloropsis gaditana])

HSP 1 Score: 175.3 bits (443), Expect = 3.100e-40
Identity = 83/103 (80.58%), Postives = 92/103 (89.32%), Query Frame = 0 
Query:  213 MISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALPENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLAVEAAADDLPGVLGVMKAHLESAA 316
            MISSRDFVFVSHK+PA D+GG  G+QAF+QTNAA  LPENSGAVRGNINS++LL+ +D YTTRVRYVCEI P GWLP +AVEAAADDLPGVLGVMKAHLES A
Sbjct:    1 MISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMAVEAAADDLPGVLGVMKAHLESEA 103
[Close]
BLAST of NO14G00930 vs. NCBI_GenBank
Match: CBN78762.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.3 bits (425), Expect = 3.800e-38
Identity = 90/220 (40.91%), Postives = 124/220 (56.36%), Query Frame = 0 
Query:   95 PPTDASDTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTKTGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKNCRLVYIKGAPK--PMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALPENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLAVEAAADDLPGVLGVMKAHLE 313
            P    S  + V  R+  Y+      D    + +K GVK+Y      + D        GLPV R+ +A+IKAP++ VA  WW    R  WD  NT  S++V     + RLVY++G PK   MISSRDF +VSHK P   VG + GS  F+Q NAA  +P N+ + RG++NSV+LL  +D  TTR  Y  E+   GWLP   V+AAAD++P  L V++ H+E
Sbjct:   21 PNAPQSGMKGVAQRLGAYVQNIEDSDKITLRADKLGVKVY-----DVVDQAAHKAAGGLPVVRVAQALIKAPVEDVALCWWQAGRRKEWDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHKAPLELVGAKPGSTLFVQANAANEVPPNNASTRGDVNSVLLLVPVDPITTRAYYAIEMDVKGWLPVKVVKAAADEIPLTLAVLRDHIE 235
The following BLAST results are available for this feature:
BLAST of NO14G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005853446.13.400e-11174.22hypothetical protein NGA_0179202 [Nannochloropsis ... [more]
EWM24734.13.100e-4080.58Lipid-binding START [Nannochloropsis gaditana][more]
CBN78762.13.800e-3840.91expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002261NSK002261Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00930.1NO14G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00930.2NO14G00930.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555443gene_5662Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100272g4gene5749Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00930.1NO14G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00930.2NO14G00930.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00930 ID=NO14G00930|Name=NO14G00930|organism=Nannochloropsis oceanica|type=gene|length=2780bp
ATACACTTCACTCGTCCTCGTTGCTTCCACAAATCACTTTCTCCCTCTTC
AACTACTAAAGTTCCGCAGAACACTTCCACTCACAAATCCCACACAAAGC
TCCACACAAAACCGCAGCCAAACCCACCAAGGACAAGAATGTACAGCCGC
TCCCTGCAACGTTCTCTTGCCCTTGCAGCATGCGTTACGGTCAGCGGCGA
GTTTGCCGCCCGCGTGCACCGCCAGCAACAACAGCAACAGGAGGAAAGCG
ACCATCCCTACCACCTTCAACATCACGTTCTCCTCCACCTCCCTTCCTCC
ACCGCCTCCTCCTTGTCCACCACCGCCTCCGCCCCATCGCTCGCCTCCTT
TTTTCTTTCCTCTCCGTCGCCTGCCTTTTGCTCCGCTACCGCGATCCCGG
AATACCATCAAGTCCCCCTCCCCCCTACGGATGCCAGCGACACGCAAGCC
GTGATTTCCCGTATGAGAAAGTATCTGGCTGCCCCCTCGCTCGATGACGT
CGGGAAGTTCAAGAAAGAGAAGGCTGGGGTAAAGATTTACACGGTCAAGG
AAGGATCGATCCCGGATCCTGGGGAGGGAGGGACGAAGACTGGCCTGCCT
GTGGCGAGGATTGGGGAGGCGGTTATCAAGGCGCCGTTAGACCAGgtgaa
acgggcgggaggctggaatgaacggagggcgctacagaaaaagtctcatc
tatataatccactaccctcttccctcctttgatttgcaccctttcttcca
gGTGGCCACGCTATGGTGGGTGTTCAATGGCCGCATTCTTTGGGACAAGG
CGAATACTCTTGCTTCGGAGGTGGTGGAGGAGTATGGGAAGAACTGCCGT
CTGGTCTACATCAAGGGGGCTCCGAAGCCGATGATTAGCTCGCGGGACTT
TGTGTTTGTCAGCCACAAgtaaggaggggagggaggagagggagggaagg
agggaaggagggagggaatgagtgagagagaggacgacggtcctgtgtcc
gatggtcgccttacgagaatgtgtgattgtgccatgaagtggctccctcc
ctcctctcctctcctccatcagtcccttcttccctccctccttccctccc
tccttccctccctccgttcctgaaccagaagttgggatcttgtctagtgc
tgcttctctctctcggactcacatctgcttctctccctctgtccgtccct
ccctccgtccctccctcccttccaccctcagGATCCCTGCCAGTGACGTG
GGTGGGCGTGTGGGCTCCCAGGCCTTCCTACAGACCAACGCTGCCACGGC
CCTCCCTGAGAACAGCGGCGCCGTGCGCGGGAACATCAACAGTGTGGTGC
TCCTGGATAGCCTGGATGCTTATACCACCCGCGTGCGGTATGTGTGTGAG
ATTGGGCCTAATGGCTGGCTGCCCAACTTGGTGAGAAGGGAGGAGGGAAG
GGAGGGAGGGAGGGAGGGAGGGTTGAGTGTGGAAGGTGGACTTGAAGGAG
GGGAGGCAGGTAGCGATAAAGGGGGAGGGGAAGGAGGACGAGTCGATTGA
TTCATATTTATATTCTTTCTCCTTCTCCCTCTTGATCTCTCTGTCGGCGT
TTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCT
CTCACCCAACCACCCACATCCTACCCATATAATATATCGTATATCGCAAA
CCCATGTACATCCACCTCCACCTCCACCCGCACCCCTATCCACATACACC
TACACATATACCCTTACTCCCATCTATTAACCCACTCACACAGGCGGTGG
AGGCCGCGGCGGACGACTTGCCAGGTGTGCTGGGTGTGATGAAGGCGCAC
TTGGAGTCAGCGGCAGCCTCAGGTGAGTGAGCCGAGGTGGGAGGGAGGGA
TGGAAGGAATAAGAGAAGAAGGAATAATAAAAGCGGAGCAGGGGCACACA
CGGAGATGGAAGGAAAGGGAGGGGAGGGTAAGATGGCATTAAAATATAGG
AGGAAAATATGATATGCCGCATGTCTCTGTCTGCGTCCTTCCCCTAATGT
ATCCATCTCTTTTCCCGTCTCTGTTCTCCCATCTCATTCTGTACTCTTCC
CTCCCCTCCCCCCTCTTGTTCCCTTCCTCACAAGCTTAGAGGATCCCGAG
GCACTGGCCCGACGGAGGGAGAGCATGGCAAGGTCTGACCTCGCGgtacg
tgcattccttccctcctttcccctttctccctttctcccttcctcgatcg
ccttgcccatgcataatccccgctattcttaccctcccttacccttcctc
tttccaccctcccccccttcgctcagCATCCTCTCCTCGTCGACAGCGTC
ACGGCCAGCAGGGAGGATTTACTCGCCTTACGCACCCTTCTCCGTGCCAA
ATTAGAAGAAGCCAAACGGGACGAAAAGAAAATGAAATTGGACTTGGGAG
ACTTGAGAAAGAAGATTCAGGGAGATTTGAAGAAGGTGGAGGCACGCCTT
AGGACCGCGTGAGGAGAATGGAGGGAGGGGAGGAGGGAGGAAATGAAGAA
GGAGGGAGGGAGGGAGAGAGGGATGGGAGGGTGTATCATTTTGATTTTGG
CGTGAGAGGACACACACACTTTTGAGAGATGTTTCGATATAATCCAGCGA
ACGATACATCAATTTTGATGTGCGTTGGAAATGAGGGGAGAACCACGAAA
GAAGGAAGGAAATGAAAGACAGAAAGGCGGAGTTAGAGAGGGGAGACAGT
GCAATGAAGTGCCCCCCCCCCGGATAAAAT
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protein sequence of NO14G00930.1

>NO14G00930.1-protein ID=NO14G00930.1-protein|Name=NO14G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MYSRSLQRSLALAACVTVSGEFAARVHRQQQQQQEESDHPYHLQHHVLLH
LPSSTASSLSTTASAPSLASFFLSSPSPAFCSATAIPEYHQVPLPPTDAS
DTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTK
TGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKN
CRLVYIKGAPKPMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALP
ENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLAVEAAADDL
PGVLGVMKAHLESAAASA*
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protein sequence of NO14G00930.2

>NO14G00930.2-protein ID=NO14G00930.2-protein|Name=NO14G00930.2|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MYSRSLQRSLALAACVTVSGEFAARVHRQQQQQQEESDHPYHLQHHVLLH
LPSSTASSLSTTASAPSLASFFLSSPSPAFCSATAIPEYHQVPLPPTDAS
DTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTK
TGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKN
CRLVYIKGAPKPMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALP
ENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLVRREEGREG
GREGGLSVEGGLEGGEAGSDKGGGEGGRVD*
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Synonyms
Publications