NO14G00920, NO14G00920 (gene) Nannochloropsis oceanica

Overview
NameNO14G00920
Unique NameNO14G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2840
Alignment locationchr14:315320..318159 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:315320..318159 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO14G00920 vs. NCBI_GenBank
Match: EWM24739.1 (hypothetical protein Naga_100272g7 [Nannochloropsis gaditana])

HSP 1 Score: 272.7 bits (696), Expect = 1.400e-69
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 0 
Query:   66 MTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWLAAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTWGLLFVRAVIQSLLLVGIVYLTLAKRASLS 280
            M  TKE LA+ TVK+AW +TFPL+WVGLFTKGW++F Y GN +  + AFRND++A+YGLFGIDFE+   G++ TGY GW +AN A+P+A   IH SR+TAI+SAVAC+LT V Y  + K+ +E SV+I+GRC+WLA +DL+LNLTTLGLW +  N+P F TVCE  GCF LP ENV+ ST+SYTWGLL VR   Q LL   IV++TLAKRASL+
Sbjct:    1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFET-PEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLN 213
[Close]
BLAST of NO14G00920 vs. NCBI_GenBank
Match: XP_005853448.1 (hypothetical protein NGA_0179402 [Nannochloropsis gaditana CCMP526] >EKU22914.1 hypothetical protein NGA_0179402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 156.8 bits (395), Expect = 1.100e-34
Identity = 70/121 (57.85%), Postives = 95/121 (78.51%), Query Frame = 0 
Query:   97 GWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWLAAIDLSLNLTTLGLWGV 218
            GW++F Y GN +  + AFRND++A+YGLFGIDFE+   G++ TGY GW +AN A+P+A   IH SR+TAI+SAVAC+LT V Y  + K+ +E SV+I+GRC+WLA +DL+LNLTTLGLW +
Sbjct:   13 GWFDFAYKGNPEAESLAFRNDYTAQYGLFGIDFET-PEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSI 132
The following BLAST results are available for this feature:
BLAST of NO14G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24739.11.400e-6961.21hypothetical protein Naga_100272g7 [Nannochloropsi... [more]
XP_005853448.11.100e-3457.85hypothetical protein NGA_0179402 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002265NSK002265Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00920.1NO14G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589884gene_5661Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100272g7gene5751Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00920.1NO14G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00920 ID=NO14G00920|Name=NO14G00920|organism=Nannochloropsis oceanica|type=gene|length=2840bp
GATCTCCTGTATGGTTTTGTAAAGGTATTTGTAAGAATGTGTCCGTGGCG
TCTCTTCGAGCTGATCGCGCTCGCTGAGCGAGGAGTCCGAAAGCCTTACA
TAACTTGACTAGCGTCACGGCCTGGACAATGACACAAGGCCCTGCATACG
CCATGCGTGACTTCTGCCAGATAATCACCATAGCACACACACAATCCAGG
CCTTAGGATTTGGAACCCGCAAGTCAAAAGAACAATGGGGAGTCCGCTTG
CCATGGGTGTCACGCCTAAGAATATCATGGAGGGCCAGAAAATGCAATGA
AACAACGCCACCACCGCTTTCCGTGAAGAACGTGGCAAACAGAACGTCTG
TATTGCAGTGTCGCTACGGGTTGGTGGGTCGTGTCCAGGTTTCAATTGAA
TGGCGGTATGAAATGGACATTGCAGACACGTCAACTTTCGGGCAATACTC
GCTCACAAGGAGGAGCGCCCAACCTCAAGGAGGGCCCTAGGCATCCCGCG
GCCCGCAGCCGAGATTATCGGGGGCCCTGTCATTACTTCTGAACGACTTT
TGGGGCAGATCTTACGGTACTTTCGATGAATTTGACGAATCAACCTTCTT
TCGTGCAATACAAGCTGCCCACACGGGAATTTCTTAGGGTCCCTTTACGT
TTATGTTGCAGTCCTGGCGGAGGAGGAAAGGCAAGAAGGCAAGCCAGCGT
ATGTTCTCCGATATCGATCCTTCTCCTTCCTTCCTTATTTCTACATACGC
AGCCCACAGAGACCACGATCATGACCTTTACGAAAGAGTCCCTTGCGAAC
CTCACAGgtaagctgctgtggagctgggaggagggaatgggggacgaggg
gaccttgggagaagcagaagaatgagatgggccacgatctgcccgctctt
ctaccggaacttggctgtcggcaggcctctgccgcgatgccgcccaacat
tgccttgcgctcccaatccaccctttttacacatctttatatatgctaca
caaccacagTCAAGCTAGCATGGGCGATGACATTCCCGTTGGTCTGGGTG
GGCCTCTTCACCAAGGgtaagtgcattttactatcggatggactagattt
cttttatgccttggtgctcgaggcacgcgtatcgcttccttagaaagctt
tcatatgtatgtagtgcgatattttgcgagaaagctggagccgggagtgg
gcggcagcgatcggccagcccagaccccccttttggcacacggctcagtt
atcagtcgagcaaaagattgataaatgatagtaatcaaggccctctccca
aatcccaccagGCTGGTATAACTTTACCTATACGGGAAACTCTGATACCA
GCACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTTGGC
ATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCACGG
CTGGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTCATA
GCTCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACGGGC
GTGGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTTCAT
CCTCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACTTAA
CGACGCTCGGCCTGTGGGGAGTCCTTGTgtaagtatccagggaaatgaat
cagttagacctcgtacttatccttaagtcgtaggttcatgcctactcgca
tatatcgacgaaggttctaaagcaccctacggctagcctaccttataaca
tcaaattgctcatatcaactcctcctctcacctcccacccatgacgcgct
gaaactacattagCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGC
GGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTA
CACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGG
TCGGCATCGTGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGC
ACGACTAAGATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCT
GGTGGCTTCCCCGAACAAGATGGCGGTCTAAAAATTATTGTTCCCTCGAA
GAAGTAGACGGTGAAATGGAGGAGACGTTGAAAAGTAATTAGGGATGGAA
ACGTGATAGAGGGGTGCTACGATTTCAGAAGTATACACATTGGGAGAGAT
AAGAGTGCAATGTGGAATCATTTCTGAGGTGGAAGCAAGGACTAACGGGC
GTATAACTCGATGTGGAGTGGGAAGGAAGAGGAGGAAGAGGTATGGGCGT
ACGTACGTATACAGGGCCAAGGGCTTAGACAATTTACTTTTACCCTGCAC
CCTGCAAGTGACAACTCAGGATCAAAAATGTTGCGATAGAATTGAATGCG
AAGAGGAAAGCAGCACATTTTGACTCAAGTACATGTAATTCCTATTTACA
AGATTTTACATTTGTTAAGTGGTGATTTTAGTGAATGTGCAAAGGAAAAA
GGGAAGAAGAGAGGGAGAAAGGGGAAAAAAGATGTCACATCACATGAAAG
AGAGGAGAACATGAACAGGAAAAGGCAATGGGTGGCAAAAAGACGTATTT
GAAGACAGATAAATGAACTCTACGGTAAGAAAAGAGTCCTCCTTGGAAGA
CGAAGATTGCATCGAGACGTGAGCAGGACAGAATGGAATAGAGTAAAAAA
AGGGAAATTGCACGACAATAAAAGAGAAAACAAAGGTCCTTCTGACATAC
AACTTGAAAAGAAATTATGGCGTAAAGTGTCCCTGAGTCT
back to top

protein sequence of NO14G00920.1

>NO14G00920.1-protein ID=NO14G00920.1-protein|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MNLTNQPSFVQYKLPTREFLRVPLRLCCSPGGGGKARRQASVCSPISILL
LPSLFLHTQPTETTIMTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYN
FTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGA
NPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWL
AAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTW
GLLFVRAVIQSLLLVGIVYLTLAKRASLSFSTTKIGPNRSLEPSAPELVA
SPNKMAV*
back to top
Synonyms
Publications