NO14G00890, NO14G00890 (gene) Nannochloropsis oceanica

Overview
NameNO14G00890
Unique NameNO14G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr14:304758..305930 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:304758..305930 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO14G00890 vs. NCBI_GenBank
Match: EWM24731.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 165.6 bits (418), Expect = 3.000e-37
Identity = 106/246 (43.09%), Postives = 145/246 (58.94%), Query Frame = 0 
Query:   41 SRSSVNYQDEQGRSPLGVVATMAGRPMVDFVKMLVGP-LTKLRIKDARLRTPLLLAAENDRTEIFIYLLERLSQYETGWQLTEEKDCYQRGPLHYMCQHRNVAGVRALLAVAGAPPVGAKVREDGXXXXXXXXXXXXXXXARTSSGETPLFWLAQS---STFSSQEKERMEGXXNRQKERSSRDCSSIDDKNTADAVEIAELLLAAGADPQVVNAMGQKPMDVLDE--GEGDDGKEGGVKNRLQAL 281
            S   VNYQDEQGRSPLGV  T  G+   D VK LV      L ++DARLRTPLLLA+E ++T   +YLL++L      W+L +E+DC++RGPLHYMC+H NV GV+AL++VA A     +  E+G                +TSSGETPLFWLAQS   +   S+EK       +   + +   C   D  +T D +EIA LL+ AGA+P+  NA+GQ P  ++++      +G+   +K  LQAL
Sbjct:   41 SLDEVNYQDEQGRSPLGVAVTREGQS--DLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENG----NSSSVLSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHD-DKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRARAKEGRVEELKEGLQAL 279
The following BLAST results are available for this feature:
BLAST of NO14G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24731.13.000e-3743.09Ankyrin repeat-containing domain protein [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002270NSK002270Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00890.1NO14G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670943gene_5658Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100459g3gene5756Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00890.1NO14G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00890 ID=NO14G00890|Name=NO14G00890|organism=Nannochloropsis oceanica|type=gene|length=1173bp
ATGAATACCTCCAATCCACCCGACTCTTTCTTGTTAGATTGTGTTCTCGG
CTTCCCAACGAAAACCCCTGCGGAAATCGACAGCTTCATGAACCTTTACG
CCAGGGAAGGTTACCATAGCAGCAGAAGTTCTGTCAACTACCAAGACGAG
CAAGGTCGAAGTCCCTTGGGAGTCGTGGCCACAATGGCCGGGCGCCCAAT
GGTAGACTTCGTGAAGATGTTGGTGGGACCGCTAACGAAGCTGCGCATAA
AAGATGCCCGGTTACGGACCCCTTTGTTGCTTGCCGCTGAGAATGACCGT
ACAGAGATTTTCATCTATCTACTGGAGAGACTCTCACAATATGAGACGGG
ATGGCAGCTGACAGAGGAAAAGGATTGCTATCAACGTGGGCCGCTGCATT
ACATGTGCCAACACCGAAATGTGGCAGGAGTGCGGGCCCTCCTTGCCGTG
GCAGGGGCACCACCCGTCGGCGCCAAGGTAAGAGAGGATGGGGAGGAAGA
GAAGAAGAAGAAGGAGAGGATCAAGGTCGTGGTCAATGCCAGGACAAGCA
GTGGGGAGACGCCCCTCTTCTGGTTGGCACAGTCATCAACCTTTTCGTCG
CAAGAGAAAGAAAGGATGGAGGGCGGGGGAAATAGACAGAAAGAGAGAAG
TAGCCGCGACTGCTCCTCCATTGACGACAAAAACACGGCTGATGCTGTGG
AGATCGCCGAGCTTCTCCTAGCGGCAGGTGCAGACCCCCAGGTGGTCAAC
GCCATGGGCCAGAAGCCTATGGATGTACTGGATGAGGGGGAGGGGGATGA
TGGGAAGGAGGGAGGGGTGAAGAATCGGCTGCAGGCATTGTTATCCCCTG
AGAGAATTTCAAGGGGGAGGGGAGAAACAGAGAAGGAGGAGGAGGAAAAG
GAGGAGCAGGAGGCTGAGAGGAAAGTCGCAGAGAAAAAAGGGTGTGAAAA
CAGTAGCATAGCGATCAATACGCCCTTTCCGAAGACGGCTGCCGTAGCAC
CACCAGGAGGCATGCTGTCCTCCTTCCCCACCCGAGGAGTGGGATTCGAT
GCTGGTAACAGCAGTCGCATCGGCATTGGTAGTGGTAGCAGGAGTGGCAG
CAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGATAAAGCTAAAGGCACCTG
CGGCGAGAGCAAAAGATAAGTAA
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protein sequence of NO14G00890.1

>NO14G00890.1-protein ID=NO14G00890.1-protein|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MNTSNPPDSFLLDCVLGFPTKTPAEIDSFMNLYAREGYHSSRSSVNYQDE
QGRSPLGVVATMAGRPMVDFVKMLVGPLTKLRIKDARLRTPLLLAAENDR
TEIFIYLLERLSQYETGWQLTEEKDCYQRGPLHYMCQHRNVAGVRALLAV
AGAPPVGAKVREDGEEEKKKKERIKVVVNARTSSGETPLFWLAQSSTFSS
QEKERMEGGGNRQKERSSRDCSSIDDKNTADAVEIAELLLAAGADPQVVN
AMGQKPMDVLDEGEGDDGKEGGVKNRLQALLSPERISRGRGETEKEEEEK
EEQEAERKVAEKKGCENSSIAINTPFPKTAAVAPPGGMLSSFPTRGVGFD
AGNSSRIGIGSGSRSGSSGGSAPKRLKIKLKAPAARAKDK*
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Synonyms
Publications