NO14G00810, NO14G00810 (gene) Nannochloropsis oceanica

Overview
NameNO14G00810
Unique NameNO14G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1447
Alignment locationchr14:287149..288595 -

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Properties
Property NameValue
DescriptionATP synthase protein I -related
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:287149..288595 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO14G00810 vs. NCBI_GenBank
Match: EWM24725.1 (hypothetical protein Naga_100180g3 [Nannochloropsis gaditana])

HSP 1 Score: 272.3 bits (695), Expect = 2.100e-69
Identity = 173/317 (54.57%), Postives = 202/317 (63.72%), Query Frame = 0
Query:   30 TLLCFLSKSQAYFSPRS---FSSSFP--IAFGIRRNQ-QQHHEHNPHSLSDGPPPSHFSSLPYPSSLITSSQARIQAWRSFRRLPSSLFSTPT----PSPPNPPSDRDKEALRRQRILAMQKEISEEILIVSEEEREAAEAAKRKLRQSARSAIYQAYNKVGGEIAINEIGIPKKMSRMSKSKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFEASVSYGLGALLGFGYITLLGRTVEAIGTVGVPGAGVGQARFAMVILLVLLAGKYRDTIQVIPAIIGFSTYQVASFLQAFDREEVKEK 337
            TLLCF +     F P +   F+   P  IAFG+ R Q  Q H+H P      P   H S     S+L  +S  R QAW+ F RLPS   +  T                                              +AAKR LRQS R AIY+AY++VGGE+ I+EIGIPKKM+RM K  F DEE RKK+ ISRGK YA RKFQLLFDS+WLSA+GLALCW AFS + SVSYGLGA+LGFGYITLLGRTVEA+GT G PGAGVGQARFAMVILLVL+AGKYRD +QVIPA++GFSTYQVASFLQAFD ++V +K
Sbjct:   27 TLLCFFN----MFPPTTKAIFTHPCPSAIAFGLCRGQGHQQHQHVP------PRRDHQSIACSSSTLAVASPQRFQAWKHFSRLPSLRATDSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAKRALRQSTRRAIYEAYSQVGGEVNISEIGIPKKMTRMPKRAFADEEARKKEAISRGKPYAVRKFQLLFDSIWLSAIGLALCWAAFSLQTSVSYGLGAVLGFGYITLLGRTVEAMGTAG-PGAGVGQARFAMVILLVLIAGKYRDFVQVIPALVGFSTYQVASFLQAFDTQDVTDK 332          
BLAST of NO14G00810 vs. NCBI_GenBank
Match: EJK49082.1 (hypothetical protein THAOC_32076 [Thalassiosira oceanica])

HSP 1 Score: 69.7 bits (169), Expect = 2.000e-8
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 0
Query:  205 DEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCW-TAFSFEASVSYGLGALLGFGYITLLGRTVEAIGT----VGVPGAGVGQARFAMVILLVLLAGKYRDT-IQVIPAIIGFSTYQVASFLQ 327
            DE  R+++     + +A R+  L  D+ + S L  +  W  A +   ++SY  GALLG  Y   LG+ VE+IG         GAGVGQARFA +ILLV+  GK+R   +  IP+I+GF TYQ+AS  Q
Sbjct:   89 DESLRRENR----EKFAKRRQALTSDTFYFSVLIASALWIVAPNPFVTISYLFGALLGTAYSFGLGKYVESIGASVDDEEAAGAGVGQARFAFLILLVVFVGKFRSAGLLEIPSIMGFFTYQLASLGQ 212          
BLAST of NO14G00810 vs. NCBI_GenBank
Match: OEU16823.1 (hypothetical protein FRACYDRAFT_239417 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.5 bits (158), Expect = 3.800e-7
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 0
Query:  195 MSRMSKSKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFE-ASVSYGLGALLGFGYITLLGRTVEAIGT----VG-VPGAGVGQARFAMVILLVLLAGKYR-DTIQVIPAIIGFSTYQVASFLQAFDREEV 334
            M  MS+S   +E++ K++     K+Y + + +L+ ++ + +AL  ++ W A        SY  GA+ G  Y   LG+ V  IG     VG + GAGVGQARFA +ILL+L  GK R   +  IP+I+GF TYQ+AS  Q    +++
Sbjct:   92 MKEMSES---NEQSLKEE---NDKNYNSVQNELVVETAFFTALITSVLWLACDNPFIPASYLFGAMFGVAYTYGLGKFVGTIGASIDDVGAIQGAGVGQARFAFLILLLLFVGKLRVYGLVEIPSIMGFFTYQIASLSQGLKEDKI 231          
BLAST of NO14G00810 vs. NCBI_GenBank
Match: XP_002286577.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96218.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 65.1 bits (157), Expect = 5.000e-7
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 0
Query:  218 KSYAARKFQLLFDSLWLSALGLALCWTAFSFE-ASVSYGLGALLGFGYITLLGRTVEAIG------TVGVPGAGVGQARFAMVILLVLLAGKYRDT-IQVIPAIIGFSTYQVASFLQ 327
            + +A R+  L  D+L+ S L   L W   S    ++SY  GA  G  Y   LG+ VE IG           GAG+G ARFA +ILL ++ GK+RD  +  IP+I+GF TYQ+AS  Q
Sbjct:   49 EKFAKRRLALTSDTLYFSLLISCLLWLFSSNPFVTISYLFGATSGTAYAYGLGKYVETIGGSIDDIEEEGAGAGIGSARFAFLILLFVVVGKFRDQGLLEIPSIMGFFTYQLASLGQ 165          
The following BLAST results are available for this feature:
BLAST of NO14G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM24725.12.100e-6954.57hypothetical protein Naga_100180g3 [Nannochloropsi... [more]
EJK49082.12.000e-841.41hypothetical protein THAOC_32076 [Thalassiosira oc... [more]
OEU16823.13.800e-736.99hypothetical protein FRACYDRAFT_239417 [Fragilario... [more]
XP_002286577.15.000e-741.03predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002275NSK002275Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00810.1NO14G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589845gene_5649Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100180g3gene5761Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00810.1NO14G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00810 ID=NO14G00810|Name=NO14G00810|organism=Nannochloropsis oceanica|type=gene|length=1447bp
AAACACAGGCCCACCGTACCAACAGCCGTGATCATGACAATATCGTCAAG
AAGGAGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAACCCA
GCACGACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGCCAG
gtacgtctcgtggatggtatgccggaactctgatcaaatcgacagaggca
gtaaggcacggtgacgattaaatgtgatattcttttgcttctgcgccata
ttgaagcgtacctgcgtcagaattcgctaatgctatttcacagcgccccg
caacggcctgaattacatgactctaattacaagcctccatgtcttcgttc
ttacagatgaggacgctagcgctcaagaaagctaatgcgcatcgtcttct
cggtcgtctttgtacacttatattcaactccacttcatcttccctcattc
cttctcaataaatcaaagGCCTACTTCTCCCCCCGCTCCTTTTCCTCCTC
CTTCCCCATTGCATTTGGCATCCGCCGCAACCAGCAGCAGCACCACGAGC
ACAATCCCCACTCGCTCTCCGACGGCCCCCCTCCATCACATTTCTCCTCC
TTACCCTACCCATCTTCACTCATAACCTCCTCCCAAGCCCGCATCCAAGC
CTGGCGCTCTTTCCGTCGCCTCCCATCCTCCCTCTTTTCCACCCCCACAC
CCTCTCCTCCCAATCCCCCCTCCGACCGCGACAAAGAAGCCCTTCGTCGG
CAACGTATTTTGGCTATGCAAAAAGAAATCAGCGAGGAAATTCTTATCGT
TAGTGAGGAGGAGCGTGAAGCAGCCGAGGCGGCCAAGAGAAAACTCCGTC
AATCCGCGCGCTCGGCCATCTATCAAGCCTACAACAAAGTAGGCGGAGAA
ATCGCCATTAACGAGATTGGCATTCCCAAGAAGATGTCGCGCATGTCCAA
AAGCAAATTTATCGACGAGGAAACGCGTAAGAAAGACGAGATATCAAGGG
GGAAGAGCTATGCGGCGAGGAAATTTCAACTTCTATTTGACAGCCTGTGG
TTGTCCGCACTTGGGCTGGCTTTGTGCTGGACGGCTTTCTCATTTGAAGC
GAGCGTGTCGTATGGATTAGGGGCGTTGCTAGGATTCGGTTACATCACCT
TGTTAGGACGGACAGTGGAAGCAATTGGAACAGTAGGCGTCCCCGGGGCA
GGGGTGGGACAAGCACGATTTGCTATGGTGATTTTGTTGGTGCTGCTGGC
GGGGAAATACAGGGATACGATTCAAGTGATTCCGGCGATTATTGGGTTTT
CGACGTATCAGGTCGCCTCATTTTTGCAAGCCTTCGACAGGGAAGAGGTG
AAGGAGAAGACGGTAGTTGGGGAGGTTAGAGAGACGATGGCGCCTCCACA
GTAAAGTGTGGGTGAAAAGGAAAGGAGCATGAATCGAGACAAAAGCA
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protein sequence of NO14G00810.1

>NO14G00810.1-protein ID=NO14G00810.1-protein|Name=NO14G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MTISSRRRPRSDPKVSACLIKPSTTVAVLTLLCFLSKSQAYFSPRSFSSS
FPIAFGIRRNQQQHHEHNPHSLSDGPPPSHFSSLPYPSSLITSSQARIQA
WRSFRRLPSSLFSTPTPSPPNPPSDRDKEALRRQRILAMQKEISEEILIV
SEEEREAAEAAKRKLRQSARSAIYQAYNKVGGEIAINEIGIPKKMSRMSK
SKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFEA
SVSYGLGALLGFGYITLLGRTVEAIGTVGVPGAGVGQARFAMVILLVLLA
GKYRDTIQVIPAIIGFSTYQVASFLQAFDREEVKEKTVVGEVRETMAPPQ
*
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Synonyms
Publications