NO14G00740, NO14G00740 (gene) Nannochloropsis oceanica

Overview
NameNO14G00740
Unique NameNO14G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1738
Alignment locationchr14:261661..263398 -

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Properties
Property NameValue
DescriptionZinc finger, C2H2, LYAR-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:261661..263398 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR014898Znf_C2H2_LYAR
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO14G00740 vs. NCBI_GenBank
Match: ETI52990.1 (hypothetical protein F443_04007 [Phytophthora parasitica P1569] >ETL99412.1 hypothetical protein L917_03749 [Phytophthora parasitica] >ETM52563.1 hypothetical protein L914_03857 [Phytophthora parasitica])

HSP 1 Score: 137.1 bits (344), Expect = 1.000e-28
Identity = 77/163 (47.24%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSL++G +         K+ PQE WMD++  A   E   V      Q  L R+A   NVPR + KF NF++NSL +      E+ W   +    A+    NE
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWMDVVQSATCPEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEANE 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: ETK92849.1 (hypothetical protein L915_03896 [Phytophthora parasitica] >ETO81686.1 hypothetical protein F444_04066 [Phytophthora parasitica P1976])

HSP 1 Score: 135.6 bits (340), Expect = 3.000e-28
Identity = 76/163 (46.63%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSL++G +         K+ PQE W+D++  A   E   V      Q  L R+A   NVPR + KF NF++NSL +      E+ W   +    A+    NE
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATCPEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEANE 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_008901209.1 (hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >ETL46261.1 hypothetical protein L916_03837 [Phytophthora parasitica] >ETN13132.1 hypothetical protein PPTG_08058 [Phytophthora parasitica INRA-310] >ETP22788.1 hypothetical protein F441_03992 [Phytophthora parasitica CJ01A1] >ETP50780.1 hypothetical protein F442_03994 [Phytophthora parasitica P10297] >KUF64708.1 Cell growth-regulating nucleolar protein [Phytophthora nicotianae] >KUF95495.1 hypothetical protein AM588_10005475 [Phytophthora nicotianae])

HSP 1 Score: 135.6 bits (340), Expect = 3.000e-28
Identity = 76/163 (46.63%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSL++G +         K+ PQE W+D++  A   E   V      Q  L R+A   NVPR + KF NF++NSL +      E+ W   +    A+    NE
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQSATCPEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTVLVEKAWTIYETAFKASAPEANE 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_002909279.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY58093.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 135.2 bits (339), Expect = 3.900e-28
Identity = 74/147 (50.34%), Postives = 92/147 (62.59%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELW 147
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSL++G +         K+ PQE W+D++  A   E   V      Q  L R+A   NVPR + KF NF++NSL +   T  E+ W
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKNGKKQTPQERWVDVVQTATCPEDCKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAW 137          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: OWZ20695.1 (hypothetical protein PHMEG_0004871 [Phytophthora megakarya])

HSP 1 Score: 134.0 bits (336), Expect = 8.600e-28
Identity = 74/147 (50.34%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELW 147
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY  HT+CISEAEKYEKSL++G +         K+ PQE WMD +  A   E   V      Q  L R+A   NVPR + KF NF++NSL +   T  E+ W
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAGHTSCISEAEKYEKSLFQGDK--NKSKTGKKQTPQERWMDAVQSATCPEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAW 137          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: CBJ48766.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.9 bits (333), Expect = 1.900e-27
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKG 152
            MV+F CE CNETLKK QV+ H+    SC  + V+CVDC+  F G  ++AHT+C+SE +KY+ +L+K P+A         R   E W D + LAA+   S V   P L   L RM +LGNVPR EKKFKNF+ NSLR+   T   +LW ++ G
Sbjct:   61 MVYFVCESCNETLKKAQVDRHLYSCKSC--WGVTCVDCNFTFEGDSFRAHTSCVSEDQKYQGALFKAPKA-----KQKNRGVNEIWADSVLLAASNASSGVAPKP-LCAHLVRMGDLGNVPRQEKKFKNFVKNSLRVFDETSVSKLWAYVDG 204          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: OEU15454.1 (hypothetical protein FRACYDRAFT_240142 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 131.3 bits (329), Expect = 5.600e-27
Identity = 76/163 (46.63%), Postives = 99/163 (60.74%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRI--NRATEQEELWIFLK---GKIDAAK 158
            MV FSC+GC E LKK+QV+ H  R   C    VSCVDCS  F G +Y  HT+CI+EAE+YEK+++KG +         KRNPQ+EWMD++   ++   +       L+  +  M+EL N+PRNEKKF NF SNSL +  N     EE+W  LK   GK  AAK
Sbjct:    1 MVVFSCDGCGEMLKKSQVDGHANRCRRCD--SVSCVDCSVSFWGDEYSKHTSCITEAERYEKTVWKGAK--------KKRNPQQEWMDIVVHCSSNPPA------HLRSYMTTMSELDNIPRNEKKFVNFASNSLHLRGNNTKVVEEIWNLLKQEQGKRIAAK 147          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: CCA22560.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 123.2 bits (308), Expect = 1.500e-24
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQ-LPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MV+F CE CNETLKKN+VE H  R   G + VSCVDCSQVF G+ Y AHT+CISEA KYE SLY+            K+NPQ+ WM+++   AA+         S + Q L  +A   NVPR + KF NFL NSL  +     E+++   + +  A K
Sbjct:    1 MVYFVCEVCNETLKKNKVEVHASRCR-GFWAVSCVDCSQVFEGSSYAAHTSCISEARKYEGSLYR-------EKAKRKQNPQKRWMEIVSQVAAKR-----TDKSTEAQLLINIAAYDNVPRKKAKFINFLKNSLAFSDIVVAEKIFQMYEQQFKAEK 145          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_002291036.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91143.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 119.8 bits (299), Expect = 1.700e-23
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGH-YPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPR-----AGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEEL 146
            MVFF C+GC ETLKKNQV+ H   A C   Y VSCVDCS  F G DY+ HT+CI+EAE+YEK++++G R              K +PQ++W   I  AAA         P L+  +  + +L NVPR EK+F NF  NSL++    E +++
Sbjct:    1 MVFFCCDGCGETLKKNQVDGH--AAKCRDCYAVSCVDCSVSFPGDDYRGHTSCITEAERYEKTIFRGVRKLDQQGNQSVQKGKKLSPQDKWNRTIQDAAA------SAPPDLKSYMDLLVDLENVPRKEKQFHNFTVNSLKLQNTGEGKKI 143          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: GBG33494.1 (Cell growth-regulating nucleolar protein [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 119.8 bits (299), Expect = 1.700e-23
Identity = 64/164 (39.02%), Postives = 92/164 (56.10%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGS-VVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNEA 164
            MV F C+ C ET+KK +V+NH +      + +SCVDC   F G  Y+ H TCISEAEKY+ +LY+GP+AG       K +PQE W D +   A +  +  + LSP     L +M    NVPR +KKF N++ NS R+        +W  L+ +    K+ M++A
Sbjct:    1 MVSFICDACQETVKKPKVDNHYKFKCRDCWVLSCVDCGVRFEGDQYKEHNTCISEAEKYQGALYQGPKAG---KSNGKEDPQERWTDAVTRVAEKAAAGTISLSPEATDILQKMTAFENVPRKQKKFVNYVHNSFRVPPPV-VTSIWEALQKQWSDEKIEMDKA 160          
The following BLAST results are available for this feature:
BLAST of NO14G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETI52990.11.000e-2847.24hypothetical protein F443_04007 [Phytophthora para... [more]
ETK92849.13.000e-2846.63hypothetical protein L915_03896 [Phytophthora para... [more]
XP_008901209.13.000e-2846.63hypothetical protein PPTG_08058 [Phytophthora para... [more]
XP_002909279.13.900e-2850.34conserved hypothetical protein [Phytophthora infes... [more]
OWZ20695.18.600e-2850.34hypothetical protein PHMEG_0004871 [Phytophthora m... [more]
CBJ48766.11.900e-2746.71conserved unknown protein [Ectocarpus siliculosus][more]
OEU15454.15.600e-2746.63hypothetical protein FRACYDRAFT_240142 [Fragilario... [more]
CCA22560.11.500e-2444.94conserved hypothetical protein [Albugo laibachii N... [more]
XP_002291036.11.700e-2343.71predicted protein [Thalassiosira pseudonana CCMP13... [more]
GBG33494.11.700e-2339.02Cell growth-regulating nucleolar protein [Aurantio... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002284NSK002284Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00740.1NO14G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589817gene_5642Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100180g9gene5766Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00740.1NO14G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00740 ID=NO14G00740|Name=NO14G00740|organism=Nannochloropsis oceanica|type=gene|length=1738bp
TGCCAACCTCCTGGCTATCCTTGCCTCCCTTTTTGGTTTTGGTATCATCA
AAGCGTAAAACATTTATTATTGTACTCCCTATGCTTATATTTAATACCTG
CTCGTATTCTGCACTGGGTTTGGGTTGTCTAAAGCTGGGATAGGGGAAGG
CACGGAGCACATATGAGGCGGGTATTGAAGCAAGTGTTCGTCAGCCGTCG
CCCCATCCACACACCCTTCACTTTCTCTTTCCAGGCTTACCACAAGTCGG
CCTTTGCACCTATCTCGTGAAGAGTAGTAAGCTCACGCTCATCACACCTT
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGGGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGgtacgtatatagtagggttagtttttcgtaggatttgtgtggga
gtggaagaacgaaatagtacacgtcaacaagggacctcatgtctgttgtg
tcgcttggctcaacctgaaaaagagcgacctgagcctggtgccacaatca
ccactttttccacattcccgcacacaaacacataatagATAAATCGAGCG
ACTGAGCAAGAAGAACTGTGGATTTTTTTGAAGGGAAAGATAGACGCAGC
GAAGGTAGCCATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGG
ATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAA
GGATCTGACAAGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCT
AGACAACACCAAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGG
AGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCC
AAGAAGAAACAGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGG
CAATGACGGTGACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCT
CCTTTCCATGGGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGA
AGAAAAATGGACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTC
GAAGACGAGCACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGG
CATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATG
CTAGTTAAATAGTAACGCTGGGCAGGGAATAAGCGTGGGATTATTGGTGG
CAGAGAGAAGGCCCAAAAAGACATCAAAACTCAAAAAAATCAAAAACCAA
AAAGCATATGCTCAAGGAAAAGCATGGAGAACACCCGC
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protein sequence of NO14G00740.1

>NO14G00740.1-protein ID=NO14G00740.1-protein|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHT
TCISEAEKYEKSLYKGPRAGGGGGKGKKRNPQEEWMDMIGLAAAEEGSVV
GLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLK
GKIDAAKVAMNEAEEKKKKERKDEEKEGKEEDAATISTKGSDKKERETIT
TPIGTLDNTKKSKKGKKKRKAGEEGEAAVEDEPATPRQSKKKQKNGAPTT
AALKGGNDGDKHSLAAVGEAEVSFPWGKTIKRLIKKAEGRKMDRQTLQKE
ALALASKTSTQSKKGLKRQFKEALGGGVAGVQVNGEVVMLVK*
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Synonyms
Publications