NO14G00740, NO14G00740 (gene) Nannochloropsis oceanica

Overview
NameNO14G00740
Unique NameNO14G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1738
Alignment locationchr14:261661..263398 -

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Properties
Property NameValue
DescriptionZinc finger, C2H2, LYAR-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:261661..263398 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR014898Znf_C2H2_LYAR
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO14G00740 vs. NCBI_GenBank
Match: EWM24724.1 (Zinc finger, C2H2, LYAR-type [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 2.700e-58
Identity = 112/159 (70.44%), Postives = 127/159 (79.87%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVA 160
            MVFFSCEGCNETLKK QVE+H+RRA C  YPVSCVDCSQVF G+ YQAHT+CISEAEKYEKSLYKGP+AG       KRNPQEEWM+MI   A +     G++  L+  L RMAELGNVPRNEKKFKNFL+NSLRINR+ EQ+ELW +LKGK+D  K A
Sbjct:    1 MVFFSCEGCNETLKKAQVESHLRRALCSRYPVSCVDCSQVFPGSSYQAHTSCISEAEKYEKSLYKGPKAGNKGGKGKKRNPQEEWMEMIASVACDNSETGGVNSILRRHLSRMAELGNVPRNEKKFKNFLNNSLRINRSNEQDELWKYLKGKMDENKPA 159          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_008617906.1 (hypothetical protein SDRG_13587 [Saprolegnia diclina VS20] >EQC28714.1 hypothetical protein SDRG_13587 [Saprolegnia diclina VS20])

HSP 1 Score: 142.5 bits (358), Expect = 2.400e-30
Identity = 77/158 (48.73%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R  +C  + V+CVDCS VF G DY AHTTCISEAEKY+ +L++G +         KRNPQE WMD+I    A E       P +Q  L R+    NVPR + KF NFL NS+       +E+LW FL+ + +  K
Sbjct:   14 MVFFVCEGCNETLKKNKVDQHAARCRNC--WAVTCVDCSVVFKGNDYAAHTTCISEAEKYQGALFQGEKG----KAAAKRNPQERWMDLITSVTAPE-------PKVQQALQRIQGYDNVPRKKGKFMNFLKNSIGAQSGGLEEKLWTFLETEFNKLK 158          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_012202433.1 (hypothetical protein SPRG_08075 [Saprolegnia parasitica CBS 223.65] >KDO26785.1 hypothetical protein SPRG_08075 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 142.5 bits (358), Expect = 2.400e-30
Identity = 77/158 (48.73%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R  +C  + V+CVDCS VF G DY AHTTCISEAEKY+ +L++G +         KRNPQE WMD+I    A E       P +Q  L R+    NVPR + KF NFL NS+       +E+LW FL+ + +  K
Sbjct:    1 MVFFVCEGCNETLKKNKVDQHAARCRNC--WAVTCVDCSVVFKGNDYAAHTTCISEAEKYQGALFQGEKG----KAATKRNPQERWMDLITSVTAPE-------PKVQQALQRIQGYDNVPRKKGKFMNFLKNSIGAQSGGLEEKLWTFLETEFNKLK 145          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_009529279.1 (hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae] >EGZ15530.1 hypothetical protein PHYSODRAFT_346613 [Phytophthora sojae])

HSP 1 Score: 141.4 bits (355), Expect = 5.400e-30
Identity = 80/163 (49.08%), Postives = 96/163 (58.90%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSLY+G +  G      K+ PQE WMD +  A   +         LQ  L R+A   NVPR + KF NF+SNSL +  A   E  W   +    A+    NE
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLYQGDKNKG--KPGKKQTPQERWMDAVQSATCPD------DRKLQDVLTRIAGYDNVPRKKNKFVNFVSNSLALRDAALVERAWTIYETAFKASAPESNE 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_024577143.1 (Cell growth-regulating nucleolar protein [Plasmopara halstedii] >CEG40774.1 Cell growth-regulating nucleolar protein [Plasmopara halstedii])

HSP 1 Score: 141.0 bits (354), Expect = 7.000e-30
Identity = 79/163 (48.47%), Postives = 98/163 (60.12%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEK+LY+G +         K+ PQE WMD++  A   E   V      Q  L R+A   NVPR + KF NF+SNSL +   T  E+ WI  +     A V  ++
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSIVFEGNDYAAHTSCISEAEKYEKTLYQGDK--NKKSSGKKKTPQERWMDVVQSATCPEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVSNSLAMRDTTLVEKAWIIYETAFKKAAVVADD 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: OQS02446.1 (hypothetical protein THRCLA_05180, partial [Thraustotheca clavata])

HSP 1 Score: 141.0 bits (354), Expect = 7.000e-30
Identity = 77/158 (48.73%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R  +C  + V+CVDCS VF G DY AHTTCISEAEKY+ +LY+G +         KRNPQE WMDMI  A + +  V          L R+    NVPR + KF NFL NS+       +E LW FL+ + +  K
Sbjct: 1850 MVFFVCEGCNETLKKNKVDQHAARCRNC--WAVTCVDCSVVFKGNDYAAHTTCISEAEKYQGALYQGEKG----KTTAKRNPQERWMDMIQSATSTDSKV-------NQALQRIQSYDNVPRKKGKFMNFLKNSIGAQGPGVEERLWTFLETEFNKLK 1994          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: OQR83955.1 (hypothetical protein ACHHYP_14086 [Achlya hypogyna])

HSP 1 Score: 140.6 bits (353), Expect = 9.200e-30
Identity = 77/158 (48.73%), Postives = 96/158 (60.76%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R  +C  + V+CVDCS VF G DY AHTTCISEAEKYE +LY+G +         K+NPQE WMD+I   +A +  V          L R+    NVPR + KF NFL NS+    A  +E LW FL+ + +  K
Sbjct:    1 MVFFVCEGCNETLKKNKVDQHAARCRNC--WAVTCVDCSVVFKGNDYAAHTTCISEAEKYEGALYQGNKG----KAAVKKNPQERWMDLIQSVSAPDTKV-------NQALQRIQSYDNVPRKKAKFMNFLKNSIGTQGAGLEERLWTFLETEFNKLK 145          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: POM81618.1 (Hypothetical protein PHPALM_389 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 139.0 bits (349), Expect = 2.700e-29
Identity = 78/163 (47.85%), Postives = 97/163 (59.51%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAKVAMNE 163
            MVFF CEGCNETLKKN+V+ H  R  +C  + VSCVDCS VF G DY AHT+CISEAEKYEKSL++G +         K+ PQE WMD++  A   E   V      Q  L R+A   NVPR + KF NF++NSL +   T  E+ W   +    A+    NE
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAGRCRNC--WAVSCVDCSVVFEGNDYAAHTSCISEAEKYEKSLFQGDK--NKSKAGKKQTPQERWMDVVQSATCAEDRKV------QDVLTRIAGYDNVPRKKNKFVNFVTNSLALRDTTLVEKAWTIYETAFKASAPESNE 153          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_009838894.1 (hypothetical protein H257_13136 [Aphanomyces astaci] >ETV71706.1 hypothetical protein H257_13136 [Aphanomyces astaci])

HSP 1 Score: 137.5 bits (345), Expect = 7.800e-29
Identity = 72/157 (45.86%), Postives = 97/157 (61.78%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R     + V+CVDC  VF G DY AHTTCISEA+KYE +LY+GP+         K+NPQE+WMD++  + A +       P +   L R+A   NVPR + KF NF+ NS+       +++LW FL+ + +  K
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHAARCK-NCWAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQGPKLS----KQAKKNPQEKWMDLVQSSTAPD-------PKVNQALQRIAGYDNVPRKKPKFLNFVKNSIGFTGV--EDQLWTFLETEFNKLK 143          
BLAST of NO14G00740 vs. NCBI_GenBank
Match: XP_008869399.1 (hypothetical protein H310_06206 [Aphanomyces invadans] >ETW01551.1 hypothetical protein H310_06206 [Aphanomyces invadans])

HSP 1 Score: 137.5 bits (345), Expect = 7.800e-29
Identity = 76/158 (48.10%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MVFFSCEGCNETLKKNQVENHIRRA-SCGHYPVSCVDCSQVFHGADYQAHTTCISEAEKYEKSLYKGPRAGGXXXXXXKRNPQEEWMDMIGLAAAEEGSVVGLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLKGKIDAAK 158
            MVFF CEGCNETLKKN+V+ H  R  +C  + V+CVDC  VF G DY AHTTCISEA+KYE +LY+ P+A        K+NPQE WMD+I  + A +  V          L R+A   NVPR + KF NFL NS+ I     +++LW FL+ + +  K
Sbjct:    1 MVFFVCEGCNETLKKNKVDAHASRCRNC--WAVTCVDCQVVFKGNDYAAHTTCISEAQKYEGALYQAPKAS----KQAKKNPQERWMDLIQSSTAPDAKV-------NQALQRIAGYDNVPRKKPKFFNFLKNSIGITGV--EDKLWTFLETEFNKLK 143          
The following BLAST results are available for this feature:
BLAST of NO14G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24724.12.700e-5870.44Zinc finger, C2H2, LYAR-type [Nannochloropsis gadi... [more]
XP_008617906.12.400e-3048.73hypothetical protein SDRG_13587 [Saprolegnia dicli... [more]
XP_012202433.12.400e-3048.73hypothetical protein SPRG_08075 [Saprolegnia paras... [more]
XP_009529279.15.400e-3049.08hypothetical protein PHYSODRAFT_346613 [Phytophtho... [more]
XP_024577143.17.000e-3048.47Cell growth-regulating nucleolar protein [Plasmopa... [more]
OQS02446.17.000e-3048.73hypothetical protein THRCLA_05180, partial [Thraus... [more]
OQR83955.19.200e-3048.73hypothetical protein ACHHYP_14086 [Achlya hypogyna... [more]
POM81618.12.700e-2947.85Hypothetical protein PHPALM_389 [Phytophthora palm... [more]
XP_009838894.17.800e-2945.86hypothetical protein H257_13136 [Aphanomyces astac... [more]
XP_008869399.17.800e-2948.10hypothetical protein H310_06206 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002284NSK002284Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00740.1NO14G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589817gene_5642Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100180g9gene5766Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00740.1NO14G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00740 ID=NO14G00740|Name=NO14G00740|organism=Nannochloropsis oceanica|type=gene|length=1738bp
TGCCAACCTCCTGGCTATCCTTGCCTCCCTTTTTGGTTTTGGTATCATCA
AAGCGTAAAACATTTATTATTGTACTCCCTATGCTTATATTTAATACCTG
CTCGTATTCTGCACTGGGTTTGGGTTGTCTAAAGCTGGGATAGGGGAAGG
CACGGAGCACATATGAGGCGGGTATTGAAGCAAGTGTTCGTCAGCCGTCG
CCCCATCCACACACCCTTCACTTTCTCTTTCCAGGCTTACCACAAGTCGG
CCTTTGCACCTATCTCGTGAAGAGTAGTAAGCTCACGCTCATCACACCTT
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGGGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGgtacgtatatagtagggttagtttttcgtaggatttgtgtggga
gtggaagaacgaaatagtacacgtcaacaagggacctcatgtctgttgtg
tcgcttggctcaacctgaaaaagagcgacctgagcctggtgccacaatca
ccactttttccacattcccgcacacaaacacataatagATAAATCGAGCG
ACTGAGCAAGAAGAACTGTGGATTTTTTTGAAGGGAAAGATAGACGCAGC
GAAGGTAGCCATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGG
ATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAA
GGATCTGACAAGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCT
AGACAACACCAAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGG
AGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCC
AAGAAGAAACAGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGG
CAATGACGGTGACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCT
CCTTTCCATGGGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGA
AGAAAAATGGACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTC
GAAGACGAGCACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGG
CATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATG
CTAGTTAAATAGTAACGCTGGGCAGGGAATAAGCGTGGGATTATTGGTGG
CAGAGAGAAGGCCCAAAAAGACATCAAAACTCAAAAAAATCAAAAACCAA
AAAGCATATGCTCAAGGAAAAGCATGGAGAACACCCGC
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protein sequence of NO14G00740.1

>NO14G00740.1-protein ID=NO14G00740.1-protein|Name=NO14G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHT
TCISEAEKYEKSLYKGPRAGGGGGKGKKRNPQEEWMDMIGLAAAEEGSVV
GLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRINRATEQEELWIFLK
GKIDAAKVAMNEAEEKKKKERKDEEKEGKEEDAATISTKGSDKKERETIT
TPIGTLDNTKKSKKGKKKRKAGEEGEAAVEDEPATPRQSKKKQKNGAPTT
AALKGGNDGDKHSLAAVGEAEVSFPWGKTIKRLIKKAEGRKMDRQTLQKE
ALALASKTSTQSKKGLKRQFKEALGGGVAGVQVNGEVVMLVK*
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Synonyms
Publications