NO14G00720, NO14G00720 (gene) Nannochloropsis oceanica

Overview
NameNO14G00720
Unique NameNO14G00720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1298
Alignment locationchr14:257448..258745 +

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Properties
Property NameValue
DescriptionProtein yippee-like
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:257448..258745 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004910Yippee/Mis18
IPR034751Yippee
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO14G00720 vs. NCBI_GenBank
Match: OVA16046.1 (Yippee/Mis18 [Macleaya cordata])

HSP 1 Score: 149.4 bits (376), Expect = 6.600e-33
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKDPDEGW 115
            MGRLFI  L GP+++ C  C+  L+S + IISK+F GR GRAFLF  VVN++ GP E R L++GLHTV D YC  C+ ++GW+YE+A+E SQKYKEGKYILER RI+K   EGW
Sbjct:    1 MGRLFIESLPGPKIFKCKYCKVDLASYEDIISKEFQGRYGRAFLFKTVVNISLGPDEDRQLMSGLHTVNDFYCSSCQQILGWRYEKAYEESQKYKEGKYILERERILK---EGW 111          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_009415723.1 (PREDICTED: putative yippee-like protein Os10g0369500 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 148.3 bits (373), Expect = 1.500e-32
Identity = 69/114 (60.53%), Postives = 85/114 (74.56%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKDPDEGW 115
            MG LF+  L GP+V+ C RC+   +S+D IISK F GR GRA+LF  VVN+T GP E R LITGLHTV DIYC  C+ ++GW+YE+A+E SQKYKEGKYILE+ R+ K   EGW
Sbjct:    1 MGLLFVESLPGPKVFKCGRCKVDSASHDAIISKDFHGRYGRAYLFKSVVNITLGPDEDRHLITGLHTVNDIYCSCCQQILGWRYEKAYEESQKYKEGKYILEKARMSK---EGW 111          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: NP_001149192.1 (protein yippee-like OJ1003C07.11 [Zea mays] >XP_020399252.1 protein yippee-like OJ1003C07.11 isoform X2 [Zea mays] >ACG34505.1 protein yippee-like OJ1003C07.11 [Zea mays] >AQL09099.1 Protein yippee-like OJ1003C07.11 [Zea mays] >AQL09100.1 Protein yippee-like OJ1003C07.11 [Zea mays])

HSP 1 Score: 147.5 bits (371), Expect = 2.500e-32
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MG LF+  L+G  V+ C RC+   +S D IIS+ F GR GRA+LFD VVN+  GP+E R L+TGLHTV DIYC  C+ ++GW+YE+A+E+SQKYKEGKYILER R++KD
Sbjct:    1 MGLLFLERLEGEGVFRCRRCRVDAASKDAIISRDFYGRSGRAYLFDHVVNICLGPNEDRYLVTGLHTVNDIYCSCCQQILGWRYEKAYEQSQKYKEGKYILERARMVKD 109          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: KXZ43909.1 (hypothetical protein GPECTOR_78g97 [Gonium pectorale])

HSP 1 Score: 147.5 bits (371), Expect = 2.500e-32
Identity = 62/108 (57.41%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIK 109
            MGR F + L+GP+++ C+ C+ H + +D IISK+F GR GRA+L +  VNV+ GP E+RVLITGLHTVADI+C  C +++GWKYE AFE SQKYKEGK+I+E+ +++K
Sbjct:    1 MGRPFKQYLNGPRIYSCATCRAHAADHDDIISKEFQGRHGRAYLINNAVNVSLGPREERVLITGLHTVADIFCTCCNSVLGWKYEHAFEESQKYKEGKFIIEKAKVMK 108          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_005651784.1 (yippee-like protein [Coccomyxa subellipsoidea C-169] >EIE27240.1 yippee-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 147.5 bits (371), Expect = 2.500e-32
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MGR F + L+G +++ C+ CQ H +  + + SK F GR GRAFLF+ VVN+T GP E+R+L+TGLHTVADIYC  C T++GWKYE AFE SQKYKEGKYILE+ +++K+
Sbjct:    1 MGRPFRQYLNGTRIYSCNTCQCHSADAEDVESKSFQGRHGRAFLFNHVVNITLGPKEERLLMTGLHTVADIYCTCCNTVLGWKYERAFEESQKYKEGKYILEKAKLMKE 109          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_005847110.1 (hypothetical protein CHLNCDRAFT_134827 [Chlorella variabilis] >EFN55008.1 hypothetical protein CHLNCDRAFT_134827 [Chlorella variabilis])

HSP 1 Score: 147.1 bits (370), Expect = 3.300e-32
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MG LF + L G +++ CS+C+TH + + Q+ISK F GR GRA+LF  VVNVT GP E R+LITGLHTV D YC+ C +++GWKYE A+E SQKYKEGKYILE+ ++ K+
Sbjct:    1 MGVLFKQYLSGDKIYTCSQCKTHCTDHGQLISKAFQGRHGRAYLFSDVVNVTLGPREDRMLITGLHTVCDCYCITCNSVLGWKYEVAYEESQKYKEGKYILEKAKVQKE 109          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_010909030.1 (PREDICTED: putative yippee-like protein Os10g0369500 [Elaeis guineensis])

HSP 1 Score: 146.7 bits (369), Expect = 4.300e-32
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKDPDEGW 115
            MG LF+  L GP+V+ C RC+   +S+D IISK F GR GRA+LF  VVN++ GP+E R L+TGLHTV DIYC  C+ ++GW+YE+A++  QKYKEGKYILE+ R++K   EGW
Sbjct:    1 MGLLFVESLPGPKVFKCGRCKVDSASHDAIISKDFNGRYGRAYLFKSVVNISLGPNEDRHLVTGLHTVNDIYCSCCQQILGWRYEKAYDEDQKYKEGKYILEKARMLK---EGW 111          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_002468349.1 (putative yippee-like protein Os10g0369500 [Sorghum bicolor] >EER95347.1 hypothetical protein SORBI_3001G472500 [Sorghum bicolor])

HSP 1 Score: 146.4 bits (368), Expect = 5.600e-32
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MG LF+  L+G  V+ C RC+   +S D IIS+ F GR GRA+LFD VVN+  GP+E R L+TGLHTV DIYC  C+ ++GW+YE+A+E+S+KYKEGKYILER R++KD
Sbjct:    1 MGLLFLERLEGEGVFRCRRCRVDAASKDAIISRDFYGRSGRAYLFDHVVNICLGPNEDRYLVTGLHTVNDIYCSCCQQILGWRYEKAYEQSEKYKEGKYILERARMVKD 109          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_002675699.1 (predicted protein [Naegleria gruberi] >EFC42955.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 146.4 bits (368), Expect = 5.600e-32
Identity = 62/109 (56.88%), Postives = 86/109 (78.90%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MGRLF+R LDGP V+ CS C +HL  ND+IISK F GR G+A+LF+K VNV+ GP E+R L+TGLH V D+YC++C++ VGWKY+EA+  +++YK GK+ LE T++ K+
Sbjct:    1 MGRLFLRYLDGPSVYVCSNCNSHLCMNDEIISKHFHGRYGKAYLFNKAVNVSNGPLEERQLMTGLHVVCDVYCVNCKSNVGWKYKEAYATTEQYKVGKFCLEMTKLKKE 109          
BLAST of NO14G00720 vs. NCBI_GenBank
Match: XP_004985376.1 (putative yippee-like protein Os10g0369500 [Setaria italica] >KQK92168.1 hypothetical protein SETIT_038136mg [Setaria italica])

HSP 1 Score: 146.0 bits (367), Expect = 7.300e-32
Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    1 MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKD 110
            MG LF+  L+G  V+ C RC+   +S D IIS+ F GR GRA+LFD VVN+  GP+E R L+TGLHTV DIYC  C+ ++GW+YE+A+++SQKYKEGKYILER R++KD
Sbjct:    1 MGLLFVERLEGEGVFKCRRCRVDAASKDAIISRDFYGRTGRAYLFDHVVNICLGPNEDRYLVTGLHTVNDIYCSCCQQILGWRYEKAYDQSQKYKEGKYILERARMVKD 109          
The following BLAST results are available for this feature:
BLAST of NO14G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OVA16046.16.600e-3359.65Yippee/Mis18 [Macleaya cordata][more]
XP_009415723.11.500e-3260.53PREDICTED: putative yippee-like protein Os10g03695... [more]
NP_001149192.12.500e-3259.63protein yippee-like OJ1003C07.11 [Zea mays] >XP_02... [more]
KXZ43909.12.500e-3257.41hypothetical protein GPECTOR_78g97 [Gonium pectora... [more]
XP_005651784.12.500e-3258.72yippee-like protein [Coccomyxa subellipsoidea C-16... [more]
XP_005847110.13.300e-3258.72hypothetical protein CHLNCDRAFT_134827 [Chlorella ... [more]
XP_010909030.14.300e-3257.02PREDICTED: putative yippee-like protein Os10g03695... [more]
XP_002468349.15.600e-3258.72putative yippee-like protein Os10g0369500 [Sorghum... [more]
XP_002675699.15.600e-3256.88predicted protein [Naegleria gruberi] >EFC42955.1 ... [more]
XP_004985376.17.300e-3258.72putative yippee-like protein Os10g0369500 [Setaria... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002287NSK002287Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00720.1NO14G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00720.2NO14G00720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589811gene_5639Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100978g2gene5769Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00720.1NO14G00720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00720.2NO14G00720.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00720 ID=NO14G00720|Name=NO14G00720|organism=Nannochloropsis oceanica|type=gene|length=1298bp
GGTTTGGATGCGATGATTAAAGCGTCGAATGTGGTGCGTGCGTAACAAGC
GGTAACAAGTGCTACAAAAACATCATCGATGTGGCGCCATGAGCTTCATG
GGCAGCACATACAAGAAATCAAGCCAGCAGAGAGTCGCACGGTTTTTAAG
GCTCGACTAAATCTTTTTCTCCTCCTCACACATACACCTCACCATCACGA
CGACGACAGGCACAAAGTACGTCAACACGTGTCGGGGCAGCAGCAGCAGA
GGACAAGTTTCCAACTTGCCTCCTCAAAGGTTCTCCAATCCCGCTATCTA
TAGCTTGCGCTCACGCACTTCTGTCCTCCCTACCCAAGGCAAGCGCACAA
CTCATTCAGTTCCTTGGGGGGATGGGACGCCTCTTCATAAGgtacgccgc
aaaccgtatctcactccctcgaaaacctccccacactgacagctcctccc
tctttccttcctccttccctccctccccttcctacatccaagGTGCTTGG
ACGGTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAACGCACTTGTCATCG
AATGACCAAATTATAAGCAAGCAATTTACGGGCCGTGGGGGCCGCGCATT
TTTGTTTGACAAAGTgtaagttagcgattgaaaaagagggaagaagggaa
gaaaaaacctgaggcgagggaagaggaggcgctcaaacgtgctttgcaag
cgaaaagagaaattgtgtcatgatccgtgatgattttatcatcgtttctt
tccacactcgaggactcaaatgagtacccactcgctcctcctaacccttt
ttggattgatagGGTGAACGTCACCACGGGCCCTCATGAGAAGCGCGTGC
TCATCACAGGGCTGCACACCGTGGCGGATATATACTGCCTGGACTGCGAG
gtaggtaggtaggaaatggagcaaagcagcgaaggggggatggagtggag
ggctaccgagagcaagagtttttaaggggtggaagaagagaggcctgcat
attatcgcttgacccttctctcccccccctccctccctccctcctcctct
ctacctaaatctcaagACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTG
AGCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGAAAGGACGCGG
ATCATCAAGGATCCCGACGAAGGGTGGTAAGGGAAGGAGGAAGGGAAGGA
GGGAGGCAGGGTAGGATGGTGTATATGACGGCGGTCTTGAGAGTATACGA
AGAGGGGAAGCATGTTCCGGAGGCGCTGGCTGACAAGGACCTTGACGG
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protein sequence of NO14G00720.1

>NO14G00720.1-protein ID=NO14G00720.1-protein|Name=NO14G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVN
VTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYI
LERTRIIKDPDEGW*
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protein sequence of NO14G00720.2

>NO14G00720.2-protein ID=NO14G00720.2-protein|Name=NO14G00720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVN
VTTGPHEKRVLITGLHTVADIYCLDCEVGR*
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Synonyms
Publications