NO14G00680, NO14G00680 (gene) Nannochloropsis oceanica

Overview
NameNO14G00680
Unique NameNO14G00680
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1987
Alignment locationchr14:249359..251345 -

Link to JBrowse

Properties
Property NameValue
DescriptionATG2 Autophagy-related protein homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:249359..251345 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy
Homology
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BLAST of NO14G00680 vs. NCBI_GenBank
Match: CBN78544.1 (ATG2 Autophagy-related protein homolog [Ectocarpus siliculosus])

HSP 1 Score: 65.1 bits (157), Expect = 7.500e-7
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 0 
Query:   91 GLARMSSNLVEGAVVQAYKVMVRDVVLHMQGESGDYTLEDEGLYGGRVVFGGGGRGGEGRGDPPALSCPLLEXXXXXXXXMCGQQLFLEHHGFVQLATLNFIDASLR 198
            G+ R+SSN+V GA +Q +KV++RD+ LHM     DY+ ED GL  G +    G          P +S    E            Q FLE   FVQ+ATLNF+DA LR
Sbjct: 1123 GVLRVSSNMVAGAPMQGFKVVIRDIGLHMSNRVTDYSKEDAGLCRGALEAQRG----------PVVSPMKTE--------FSSVQEFLESSQFVQIATLNFLDAFLR 1211
The following BLAST results are available for this feature:
BLAST of NO14G00680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
CBN78544.17.500e-740.19ATG2 Autophagy-related protein homolog [Ectocarpus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00680.1NO14G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00680.1NO14G00680.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00680 ID=NO14G00680|Name=NO14G00680|organism=Nannochloropsis oceanica|type=gene|length=1987bp
GACGGAGCGGGGGAGGGGAATGAGCCCCCATTGGTGGTTGTTGATATTAT
AAATAAGGGTGGGAGGGAGGACGGGAAGGAGGGAGGAGAAACGGTGTCGG
CGTTCCTGGATCTGTACGGGGTAGCCTATCGGATGAGGGTGAAGAGTCGG
GCCGTGCCGCGGCTGTTGACGCTGTTGGTAGGGGGGGAGGAGGCGCTGGC
GGAGAGGGTGAGGGGGAGGGAGGGGGGAAGGAGAGAAGAGGGAGAGAGGG
AGGGACGGAGGGAGGGAAGGTGTGATGTGCTGCGAATATTTGGGACGGCG
TTTGATAGTGTGGTGGATTATTCGACGGGGGAGGAGGAGGAGGAGGAGGA
GGAGGGAGGGAGGGAGGAAGGGGGCCAGGGAGGGAGGGCGGTGGTGAGTT
CTGGGCTGGCCAGGATGTCGAGCAATTTGGTGGAGGGAGCGGTGGTGCAG
GCATATAAAGTGATGGTAAGGGATGTAGTGCTGCACATGCAGGGGGAAAG
CGGCGATTATACCCTGGAGGATGAGGGGCTGTATGGGGGGAGGGTGGTGT
TTGGGGGGGGGGGGAGAGGAGGGGAAGGGAGGGGCGACCCGCCTGCTCTT
TCATGTCCCTTGCTGGAAGGGGGGAGGGGGAGAGGAGGAGAGATGTGCGG
GCAGCAGgtatatgatgcgtatgaagggagagggagggagggagggctcg
ggggagggagggagtgggattggcggcagggggtgatgaattatacggcg
cctcactcagccgttttgccggccctccctctttcccgccctccccccct
cctcctccgctgccatcgtttggctcggtgcagCTGTTTCTAGAGCATCA
CGGCTTTGTCCAACTCGCCACCTTGAACTTCATCGACGCCTCCCTCCGCT
GCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCCACCCTCCCTCCCTCGC
GGCCCTGCGCTGGCCCTGGAGGTGTCGgtggggttgttgttgatgtacac
atgcggtgactcgttgatgacgttggaagaaacggtgtcgggggcctggg
aacggtggataaaggagagggagagagtggagagGGTTCGATGGGGGGGG
AAGAGGGGAAGGAGGAGGAGGAGGTTGGAGGGGAGAGGGGAAAGGAGGGG
GGAGGGAGGGATGAAGAGGGGTCGTCGTTTATAGTGACGGGAAAGAGGAG
GACAAGGACGTCACCAAAAGAATTGAGTGATGGCGTGCAGGTCGGGAGGA
CTGACTTTCCTACCTCCCTGCCTCCCTCCCTGCCTCCCTCCTCATCACGG
TATTATCTGGAGGACATTGACGAGGAAATGTTCGTCCCGGAGGCGGGAAA
CATTGGACGAGGGAGGGAGAGAGGGAGGGAAGGAGGGAGCGTGTATTCGG
GCGGTGGTGGTGAGTACATGCAGCCTGCTCGCGCGGCTGCTGCTGCTGCT
GCTGCTGCTGCTACTACTACTTTTTCTTCGACCTCTGGAACAGAATCGAT
GGCACCTCTGCTCCTGCAACAAGAACAGCAACAACAAGAAGAAGAGCAGC
AGCAGCAGCAGAAAAGGGGGGAGGGAGGGAGGGAGGGAGGGCAAGGGAAA
GGGATGAGTTTAGGCCGTATGCTGATCGATGATTTCTACGAAATGTCCTC
TGCCCTCCCTCCCTCCCTCCCTCCTTCCTCCTCCTCCTCCATTCTCCCTC
CCAAGAAAGCGGAGGGGGAGGACGAGGAAGGGAGGGAGGAAGGGTGGGGA
GGGTGGTTGGATGGGCCGGAGCTCGACGTGAGAGGGCGCAAGACATCAAT
GAATATCTTCGAAGATGGATTTTTGGTTGAAGTGGATGAATTTGAGGGGG
AGGGAGGGAAGGAGGACGGGAGGGTCGGAGAAGTGCTTGGGGAGGAGGAG
GAGGAGGGGGTGGAGGTGTTGGGGGGGAGGGGCGGACGGGGGAGGGAGGG
AGGGAGGGAGGGGAGGAAGAGGACGAGGGGTCCATAG
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protein sequence of NO14G00680.1

>NO14G00680.1-protein ID=NO14G00680.1-protein|Name=NO14G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MRVKSRAVPRLLTLLVGGEEALAERVRGREGGRREEGEREGRREGRCDVL
RIFGTAFDSVVDYSTGEEEEEEEEGGREEGGQGGRAVVSSGLARMSSNLV
EGAVVQAYKVMVRDVVLHMQGESGDYTLEDEGLYGGRVVFGGGGRGGEGR
GDPPALSCPLLEGGRGRGGEMCGQQLFLEHHGFVQLATLNFIDASLRCSS
SSSSSSSLPPSLPRGPALALEVSGSMGGEEGKEEEEVGGERGKEGGGRDE
EGSSFIVTGKRRTRTSPKELSDGVQVGRTDFPTSLPPSLPPSSSRYYLED
IDEEMFVPEAGNIGRGRERGREGGSVYSGGGGEYMQPARAAAAAAAAAAT
TTFSSTSGTESMAPLLLQQEQQQQEEEQQQQQKRGEGGREGGQGKGMSLG
RMLIDDFYEMSSALPPSLPPSSSSSILPPKKAEGEDEEGREEGWGGWLDG
PELDVRGRKTSMNIFEDGFLVEVDEFEGEGGKEDGRVGEVLGEEEEEGVE
VLGGRGGRGREGGREGRKRTRGP*
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Synonyms
Publications