NO14G00640, NO14G00640 (gene) Nannochloropsis oceanica

Overview
NameNO14G00640
Unique NameNO14G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr14:243415..244545 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:243415..244545 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO14G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL139nonsL139Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR024ngnoR024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002292NSK002292Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00640.1NO14G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670929gene_5634Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00640.1NO14G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00640 ID=NO14G00640|Name=NO14G00640|organism=Nannochloropsis oceanica|type=gene|length=1131bp
ATGGACGAGGACACCTCAGAGGCCATTTGGAGCCAGGCGACGGCAGTAGC
GCGGTGTTCTAGGCGCAAAACACTCTCGCCCAGCAAGGCCTTGGGGTTCT
TGGCCGCTTCGATCAAGGACAGCAGTGAGAACCAGGCATCTAACTCCAAC
TTTGATGGGAGCAACAACGAAGGAAACGCGTTTTCGAGCAAGCTCATGGA
TATTGAGAACTGCCCACCCGCGGGCCCGATGCAGCCGCGACGGGATCTCC
CTCTCTCTAAAGCGGGCAGCATTAGGCCTGCCCTCGTTCCTGCCTTTTCC
TCTTCCTTCATTGGTACGCCCAACAAAGCCAGGAAGACAAATACTGCAGC
CTCTCTAGCGAAAGAATCGCTTTTCCACTCGCCTGTCTACATGACATGGG
CCAAAGGCGGTGGACGACAAGCCGGGGAGATGAGACAAGTTGAGGAAGGA
GTAGGAGCAGGAGGAGTAGAAGTAGGAGGTGGAATGTTCTGGTGGTGCAA
AGGCAATGCCGCCTCATCTTCCTCCGCCCCGGGTGGCATGCGCGATATTA
CTAACCGACCGCTCATGTCTCGGCAGCTGGTGCAGAAAGATGGGGAGGGA
AGGCTGTTGCAGCAGCAGCAGGAGGAGGGGGAGAAAGAGGAAGATGAAAA
AGAGTGGAGGATTGTGTTTGAGGCAGGCAAGGTCTTAAGTGCGTCTTTCG
TCTGGCTCGATAGTCAAACACCGGGCTTGAGCGTCGTCCTGGTTTTGGAC
ACGGAGGCTTCGGCCAGGGAAGGACAGGGCGAGGAAGGGAGGGAAGAAGG
GGTAGGAGAGACATCAGTTGCTTTTTTTGACTTTCAAGGGAAAGGCGCCG
AGGAAGCAGCACGGAAGGCATTGGACATGCTGCAGGACCGGATGGCGGAA
AATGTCGCTCCTGTTCCCCTTCCTCCTCCTACTGCTGCTGCTGTTGCCGC
TGCCCCTCCTTCCAGCACCACGCCCGTCGCTCCCAACAATGCAAGGTCTT
CAACAGCACAGACGGACCTACCGCTCCTCATCCGGCGTTTCCTTCAAGCC
CCCCCCACTCCTTCGCGGCCAAGCACGTCGCTCGACAGGTTTTTGAAGCC
ACTGGTTATCCCCTCCTCTCCTTCGGCCTGA
back to top

protein sequence of NO14G00640.1

>NO14G00640.1-protein ID=NO14G00640.1-protein|Name=NO14G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MDEDTSEAIWSQATAVARCSRRKTLSPSKALGFLAASIKDSSENQASNSN
FDGSNNEGNAFSSKLMDIENCPPAGPMQPRRDLPLSKAGSIRPALVPAFS
SSFIGTPNKARKTNTAASLAKESLFHSPVYMTWAKGGGRQAGEMRQVEEG
VGAGGVEVGGGMFWWCKGNAASSSSAPGGMRDITNRPLMSRQLVQKDGEG
RLLQQQQEEGEKEEDEKEWRIVFEAGKVLSASFVWLDSQTPGLSVVLVLD
TEASAREGQGEEGREEGVGETSVAFFDFQGKGAEEAARKALDMLQDRMAE
NVAPVPLPPPTAAAVAAAPPSSTTPVAPNNARSSTAQTDLPLLIRRFLQA
PPTPSRPSTSLDRFLKPLVIPSSPSA*
back to top
Synonyms
Publications