NO14G00560, NO14G00560 (gene) Nannochloropsis oceanica

Overview
NameNO14G00560
Unique NameNO14G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr14:219103..219648 -

Link to JBrowse

Properties
Property NameValue
Descriptionferric reduction oxidase 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:219103..219648 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR013121Fe_red_NAD-bd_6
Homology
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BLAST of NO14G00560 vs. NCBI_GenBank
Match: XP_008394227.1 (PREDICTED: ferric reduction oxidase 7, chloroplastic-like isoform X1 [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-7
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:    3 KNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMPLTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTF-LDQINDELN 101
            + ++A S  P  P TL V V+GPYG        Y  LVLVAGGIG+ P  ++LS I HC+++G +  +++I +VWA++    L   +T  +D ++ +LN
Sbjct:  428 QQQSALSCTP--PTTLTVSVEGPYGHEIPYHLVYEHLVLVAGGIGISPFLAVLSDIVHCVKEGRLCQVRNILIVWAVKTSNELPLLSTIDMDSVSSKLN 524
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BLAST of NO14G00560 vs. NCBI_GenBank
Match: XP_009379521.1 (PREDICTED: ferric reduction oxidase 6-like [Pyrus x bretschneideri])

HSP 1 Score: 65.1 bits (157), Expect = 2.600e-7
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:    3 KNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMPLTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTF-LDQINDELN 101
            + ++A S  P  P TL V V+GPYG        Y  LVLVAGGIG+ P  ++LS I HC+++G +  +++I +VWA++    L   +T  +D ++ +LN
Sbjct:  428 QQQSALSCTP--PTTLTVSVEGPYGHEIPYHLVYEHLVLVAGGIGISPFLAVLSDIVHCVKEGRLCQVRNILIVWAVKTSNELPLLSTIDMDTVSSKLN 524
The following BLAST results are available for this feature:
BLAST of NO14G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_008394227.12.000e-738.38PREDICTED: ferric reduction oxidase 7, chloroplast... [more]
XP_009379521.12.600e-738.38PREDICTED: ferric reduction oxidase 6-like [Pyrus ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00560.1NO14G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00560.1NO14G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00560 ID=NO14G00560|Name=NO14G00560|organism=Nannochloropsis oceanica|type=gene|length=546bp
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAA
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protein sequence of NO14G00560.1

>NO14G00560.1-protein ID=NO14G00560.1-protein|Name=NO14G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MAKNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMP
LTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTFLDQINDELN
KHLIEQQQSQQSSQRQCVHFGMHIYVTAVGGNVVHGVNSIGIEDENKTMH
KEIGGRMRLVDGGGGGQKDFRVLYGRPKIFW*
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Synonyms
Publications